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Report for Sequence Feature Glyma19g05260

Feature Type:gene_model
Chromosome:Gm19
Start:5679368
stop:5679820
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma19g05260
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G17450AT Annotation by Michelle Graham. TAIR10: Heavy metal transport/detoxification superfamily protein | chr5:5755386-5756743 FORWARD LENGTH=149 SoyBaseE_val: 7.00E-40ISS
GO:0030001GO-bp Annotation by Michelle Graham. GO Biological Process: metal ion transport SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0046872GO-mf Annotation by Michelle Graham. GO Molecular Function: metal ion binding SoyBaseN/AISS
KOG1603 KOG Copper chaperone JGI ISS
PTHR22814Panther COPPER TRANSPORT PROTEIN ATOX1-RELATED JGI ISS
PTHR22814:SF14Panther COPPER CHAPERONE-RELATED JGI ISS
PF00403PFAM Heavy-metal-associated domain JGI ISS
UniRef100_G7KW42UniRef Annotation by Michelle Graham. Most informative UniRef hit: Metal ion binding protein n=1 Tax=Medicago truncatula RepID=G7KW42_MEDTR SoyBaseE_val: 1.00E-44ISS
UniRef100_I1N6J2UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N6J2_SOYBN SoyBaseE_val: 7.00E-64ISS

Expression Patterns of Glyma19g05260
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma19g05260 not represented in the dataset
Glyma19g05260 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma19g05260 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.19g039500 Wm82.a2.v1IGC As supplied by JGI

References for Glyma19g05260
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma19g05260
>Glyma19g05260.1   sequence type=CDS   gene model=Glyma19g05260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTGCACTAGATTACCTCTCCAACTTTTGCACTGTAACCAGCACTAGGACCAAGCAGAAAGCAATGCAGACAACAGAGATAAAAGTGAGAATGGACTGCGATGGTTGCGAAAGAAGAGTGAGAAATGCAGTGAGTTCAATAAAAGGAGTGAAATCTGTGGAGGTTAACAGAAAGGAGAGCAGGGTGGTAGTGAGAGGATATGTGGATCCAAAGAAGGTGCTGAAGAGGGTAAGGAGCACAGGGAAAGTAAGAGCTCAGTTTTGGCCATATGTTGAACAACATCTGGTCTAG
Predicted protein sequences of Glyma19g05260
>Glyma19g05260.1   sequence type=predicted peptide   gene model=Glyma19g05260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGALDYLSNFCTVTSTRTKQKAMQTTEIKVRMDCDGCERRVRNAVSSIKGVKSVEVNRKESRVVVRGYVDPKKVLKRVRSTGKVRAQFWPYVEQHLV*






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