|
A newer version of this gene model can be found here:
Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
---|---|---|---|---|---|
AT5G08500 | AT | Annotation by Michelle Graham. TAIR10: Transmembrane CLPTM1 family protein | chr5:2748261-2751590 FORWARD LENGTH=590 | SoyBase | E_val: 3.00E-29 | ISS |
GO:0007062 | GO-bp | Annotation by Michelle Graham. GO Biological Process: sister chromatid cohesion | SoyBase | N/A | ISS |
GO:0007129 | GO-bp | Annotation by Michelle Graham. GO Biological Process: synapsis | SoyBase | N/A | ISS |
GO:0007131 | GO-bp | Annotation by Michelle Graham. GO Biological Process: reciprocal meiotic recombination | SoyBase | N/A | ISS |
GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
GO:0010332 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to gamma radiation | SoyBase | N/A | ISS |
GO:0032204 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of telomere maintenance | SoyBase | N/A | ISS |
GO:0032504 | GO-bp | Annotation by Michelle Graham. GO Biological Process: multicellular organism reproduction | SoyBase | N/A | ISS |
GO:0033044 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of chromosome organization | SoyBase | N/A | ISS |
GO:0042138 | GO-bp | Annotation by Michelle Graham. GO Biological Process: meiotic DNA double-strand break formation | SoyBase | N/A | ISS |
GO:0043247 | GO-bp | Annotation by Michelle Graham. GO Biological Process: telomere maintenance in response to DNA damage | SoyBase | N/A | ISS |
GO:0045132 | GO-bp | Annotation by Michelle Graham. GO Biological Process: meiotic chromosome segregation | SoyBase | N/A | ISS |
PF05602 | PFAM | Cleft lip and palate transmembrane protein 1 (CLPTM1) | JGI | ISS | |
UniRef100_G7J2P6 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Cleft lip and palate transmembrane protein-like protein n=1 Tax=Medicago truncatula RepID=G7J2P6_MEDTR | SoyBase | E_val: 1.00E-35 | ISS |
UniRef100_I1N6I9 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1N6I9_SOYBN | SoyBase | E_val: 0 | ISS |
Glyma19g05180 not represented in the dataset |
Glyma19g05180 not represented in the dataset |
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Corresponding Name | Annotation Version | Evidence | Comments |
---|
Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma19g05180.1 sequence type=CDS gene model=Glyma19g05180 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GCAGTAGCAACAGCGCAAGGAGGGTTTGGCCTCTCTGGAATCATATGTATGGTAGTTTTTTGGTACTTCGCCTCCAAATTCTTTTCCCCCAAAAAACCTACCGAACCTTCCGCTCTCATCTCCAATCTATTTCAGAAGGCACAACCTCTAGTAGGTTATGATTTGAGTTTGAATGGAATTTCAATTTCGAGTTATGAAGTTATGATGGCACGTGATTACTTTTTTCCTAGTTGGAGCATAATAGGAGTCTATATGCTCATGTTTTCTTTGCACACTCTGGCTTTTCGCACCCAAAAAGTGGCTTACGAGACGTCTTCATTTTTGTTGGTCTCAACTGTTGTGATGTACTTGCCCAAGTCACAAGCAGATAAAAAGAAAAGTCTGTTGGGAAGTTCACCAGATTTTAGTGAGGCTCAAGTGACATCCAAGGTGGTTGATGAATCTGAAGATGATAATGATTCTAATGATGATGGTTCTGTGGAGTGGGCTTCATATTGGAAACCAAATATAACAATAAACTTGGTTGCTGACTTCACTCAGTATCTTTCTTGGAATTCATTTAATTTGGTGGCACATTTTTTAACTATATTTTTGCATGAAGTAGTATCGGAGGGATGGTTGGAAATATTTATGCATCTTGGAGGTTACATACTAGCTTTTGGCATGCTTCTATTTTTCTTGTTCACCATGTTCAAGTTTTTAACCATGTCCTTATTTAATAGGGTTGTATATGAGGAATTGGGGAAATATGGAGATGTGGATAACCAACTTTTGTGCCGTGAGCGA
>Glyma19g05180.1 sequence type=predicted peptide gene model=Glyma19g05180 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high AVATAQGGFGLSGIICMVVFWYFASKFFSPKKPTEPSALISNLFQKAQPLVGYDLSLNGISISSYEVMMARDYFFPSWSIIGVYMLMFSLHTLAFRTQKVAYETSSFLLVSTVVMYLPKSQADKKKSLLGSSPDFSEAQVTSKVVDESEDDNDSNDDGSVEWASYWKPNITINLVADFTQYLSWNSFNLVAHFLTIFLHEVVSEGWLEIFMHLGGYILAFGMLLFFLFTMFKFLTMSLFNRVVYEELGKYGDVDNQLLCRER
Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||