Glyma19g05170 - SoyBase

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Report for Sequence Feature Glyma19g05170

Feature Type:	gene_model
Chromosome:	Gm19
Start:	5481255
stop:	5483465
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g05170

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G02380	AT	Annotation by Michelle Graham. TAIR10: CONSTANS-like 2 \| chr3:487438-488624 REVERSE LENGTH=347	SoyBase	E_val: 2.00E-113	ISS
GO:0009658	GO-bp	Annotation by Michelle Graham. GO Biological Process: chloroplast organization	SoyBase	N/A	ISS
GO:0009909	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of flower development	SoyBase	N/A	ISS
GO:0005622	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: intracellular	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
KOG1601	KOG	GATA-4/5/6 transcription factors	JGI		ISS
PF00643	PFAM	B-box zinc finger	JGI		ISS
PF06203	PFAM	CCT motif	JGI		ISS
UniRef100_I1N6I8	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N6I8_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q6R3R2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: CONSTANS-like protein CO1 n=1 Tax=Populus deltoides RepID=Q6R3R2_POPDE	SoyBase	E_val: 5.00E-138	ISS

Proteins Associated with Glyma19g05170

Locus	Gene Symbol	Protein Name
	COL2b	Constans-like 2b

Expression Patterns of Glyma19g05170

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g05170

Paralog	Evidence	Comments
Glyma13g07030	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g05170 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g039000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g05170

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma19g05170

Limit To All Plant Sequences

>Glyma19g05170.1   sequence type=CDS   gene model=Glyma19g05170   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTGAAGGAAGGCACCAACAACGTTGGTGGCAGCAACACTGGCACCACCTGGTCACGTGTCTGTGACACGTGCCTGTCTGCGCCATGCGTGCTGTACTGCCATGCAGACTCAGCATATCTTTGCTCTTCCTGTGATGCTCGTGTGCATGCAGCTAACCGTGTGGCCTCGAGACACAAGCGTGTGTGGGTGTGCGAAGCGTGTGAGCGTGCTCCGGCGGCGTTTCTATGCAAAGCTGACGCAGCTTCTCTTTGTTCTTCCTGTGATGCTGACATTCACTCAGCAAACCCTCTCGCTAGCCGCCACAACCGTGTTCCCATTCTCCCGATCTCAGGTTCCCTCTTCAGGGAACCAGAGCACAATCACAAACGCGTGGAACACGCGTTCGTGAATGAGGTTGAGGAGGAAGAGGAAGGGGTTTTTGATGAGTATGAAGACGAGGTTGAAGCTGCTTCGTGGTTGTTGCCACATCCTATGAAAAATAATGATGAAATTGAGGAGAATGATTGTGGTGACGAGGGTTTTTTGTTTGTTGATGAGTATTTGGACAATCTTGTTGATTGTTGTAACTCATGTGGTCACAATGACAACCAGTTTAGCAACGTTTATCAGCACCAGCAGAATTACAACACTGTCCCTCAGAACTATGTAGTGGTTCCAGTTCAGGTGCCGCAGCATTTTCAACCCGGTTTGGACTTTGACTCATCAAAAGCTGGGTTCAGTTACGATGGTTCTCTTAGTCAAAGTGTTTCGGTTTCATCAATGGATGTTGGAGTTGTACCCGAATCAACAGTAAGTGGCATCTCAATGTCCCACTCAAAGTCACCAATAGGGACAAATGACCTATTTCCTCCCCTTCTCATGCCTTCACATCTCACACCAATGGACAGAGAGGCAAGAGTCCTAAGATATAGGGAGAAAAAGAAGACAAGAAAGTTCGAGAAGAAAATAAGATATGCCTCAAGGAAGGCCTATGCAGAGACTAGACCCCGCATAAAGGGTCGTTTTGCAAAGAGAACTGATGTAGAAGCTGAAGTGGATCAGATGTTCTCCACAAAACTATTCAATGAAGTTGGAGGTAGCATTTTTCCCACTTTCTAG

Predicted protein sequences of Glyma19g05170

Limit To All Plant Sequences

>Glyma19g05170.1   sequence type=predicted peptide   gene model=Glyma19g05170   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLKEGTNNVGGSNTGTTWSRVCDTCLSAPCVLYCHADSAYLCSSCDARVHAANRVASRHKRVWVCEACERAPAAFLCKADAASLCSSCDADIHSANPLASRHNRVPILPISGSLFREPEHNHKRVEHAFVNEVEEEEEGVFDEYEDEVEAASWLLPHPMKNNDEIEENDCGDEGFLFVDEYLDNLVDCCNSCGHNDNQFSNVYQHQQNYNTVPQNYVVVPVQVPQHFQPGLDFDSSKAGFSYDGSLSQSVSVSSMDVGVVPESTVSGISMSHSKSPIGTNDLFPPLLMPSHLTPMDREARVLRYREKKKTRKFEKKIRYASRKAYAETRPRIKGRFAKRTDVEAEVDQMFSTKLFNEVGGSIFPTF*

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