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Report for Sequence Feature Glyma19g05060

Feature Type:gene_model
Chromosome:Gm19
Start:5334397
stop:5337711
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G02350AT Annotation by Michelle Graham. TAIR10: galacturonosyltransferase 9 | chr3:479248-481178 FORWARD LENGTH=561 SoyBaseE_val: 0ISS
GO:0016051GO-bp Annotation by Michelle Graham. GO Biological Process: carbohydrate biosynthetic process SoyBaseN/AISS
GO:0005768GO-cc Annotation by Michelle Graham. GO Cellular Compartment: endosome SoyBaseN/AISS
GO:0005794GO-cc Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus SoyBaseN/AISS
GO:0005802GO-cc Annotation by Michelle Graham. GO Cellular Compartment: trans-Golgi network SoyBaseN/AISS
GO:0016757GO-mf Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring glycosyl groups SoyBaseN/AISS
GO:0016758GO-mf Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring hexosyl groups SoyBaseN/AISS
GO:0047262GO-mf Annotation by Michelle Graham. GO Molecular Function: polygalacturonate 4-alpha-galacturonosyltransferase activity SoyBaseN/AISS
PTHR13778Panther GLYCOSYL TRANSFERASE-RELATED JGI ISS
PTHR13778:SF3Panther GLYCOSYLTRANSFERASE 8 DOMAIN-CONTAINING PROTEIN 1 JGI ISS
PF01501PFAM Glycosyl transferase family 8 JGI ISS
UniRef100_G7ZV05UniRef Annotation by Michelle Graham. Most informative UniRef hit: Glycosyltransferase n=1 Tax=Medicago truncatula RepID=G7ZV05_MEDTR SoyBaseE_val: 0ISS
UniRef100_I1N6I1UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N6I1_SOYBN SoyBaseE_val: 0ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma13g06990 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.19g038000 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma19g05060.1   sequence type=CDS   gene model=Glyma19g05060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGGTTGCTACAAGAGGAGCTAGAGGTGGATCTAGTTTTCGAAGCTTGTTCTCGTTCCGGATCTTCATTTCTGCCATGTTTTCTCTTCTCTTCGTTGCCACCCTTTCGGTCCTCCTTACCACCAACCCCTCCACATCGAACGATGACCCTGATCTTCCCACCACTGGTAATGCATACGTGCATAGAACCTTTTTGGCATTGAAATCTGACCCTCTTAAGACCCGAGTAGATTTGATACACCAACAAGCTAAAGATCACATAGCACTAGTGAATGCCTATGGTGCTTACGCTAGGAAGCTCAAGCTTGACATTTCCAAGCAATTGAAGATGTTTGATGAGTTGGCACGCAATTTTTCGGATATTGCGTCGAAGACAACCTATAAGACATCATTGTTTGAGTCCGATGGTCCAATTGACGAGGATGTGCTGAGGCAGTTTGAGAAGGAGGTTAAGGATAGAGTGAAGATTGCACGGATGATCATTGTTGAGGCGAAAGAGAATTATGATAATCAGTTGAAGATCCAGAAGTTGAAGGACACAATATTTGCAGTTCATGAGTCACTTGCGAAGGCGAAGAAGAATGGGGCGTTGGCGAGCTTGATTTCGGCCAGATCGATTCCCAAGAGCTTGCATTGTTTGGCGATGAGGCTGATGGGTGAGAAGATTTCAAATCCTGAGAAGTATAGAGACGAGGAGCCGAAGCTGGAGTTTGAAGATCCCACTTTGTATCATTATGCAATATTCTCGGATAATGTAATAGCTGTGTCGGTGGTGGTGAGATCAGTGGTGAAGAATGCAGTGGAACCATGGAAGCATGTTTTTCATGTTGTTACAAACAGGATGAATGTTGGGGCAATGAAGGTTTGGTTTAAGATGAGGCCCATTGACGGTGGTGCATTTTTAGAGGTGAAATCGGTGGAGGAATTCACATTCTTAAATTCATCATATGTCCCGATCTTGAGGCAACTTGAGTCAGCAAAAATGAAGCAGCGGTTCTTAGAGAATCAAGCTGATAATGCCACAAATGGTGCAAACCTGAAAAATACAAAGTCCCTGTCCATGTTGGATCACCTTCGATTTTATTTGCCAGAGATGTATCCTAACTTGTATAAGATCTTACTTTTGGATGATGATGTTGTGGTTCAAAAAGACTTGACAGGTTTGTGGAAAATTGATTTGGATGGGAAGGTTAATGGTGCTGTTGAGATCTGTTTTGGTTCTTTTCACCGGTATGCCCAGTACTTGAATTTCTCTCATCCTTTAATCAAGGAGAGCTTCAATCCAAAGTCTTGTGCTTGGGCCTATGGCATGAATATATTTAATCTCGATGCTTGGAGGCGTGAAAAGTGTACAGATAATTACCACTATTGGCAGAACTTGAATGAAGACCAAACTTTGTGGAAAGCAGGGACCCTATCACCTGGTTTGATCACCTTCTACTCCACAACCAAGTCACTGGACAAATCCTGGCACGTGCTTGGGCTAGGATACAATCCCAGCATTAGCATGGATGAGATCAGCAATGCTGCAGTCATTCATTACAATGGAGACATGAAACCCTGGCTTGATATTGCTTTGAACCAGTACAAAAATCTTTGGACCAAATACGTGGACAACGATATGGAGTTTGTGCAGATGTGCAATTTTGGCCTATAG

>Glyma19g05060.1   sequence type=predicted peptide   gene model=Glyma19g05060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAVATRGARGGSSFRSLFSFRIFISAMFSLLFVATLSVLLTTNPSTSNDDPDLPTTGNAYVHRTFLALKSDPLKTRVDLIHQQAKDHIALVNAYGAYARKLKLDISKQLKMFDELARNFSDIASKTTYKTSLFESDGPIDEDVLRQFEKEVKDRVKIARMIIVEAKENYDNQLKIQKLKDTIFAVHESLAKAKKNGALASLISARSIPKSLHCLAMRLMGEKISNPEKYRDEEPKLEFEDPTLYHYAIFSDNVIAVSVVVRSVVKNAVEPWKHVFHVVTNRMNVGAMKVWFKMRPIDGGAFLEVKSVEEFTFLNSSYVPILRQLESAKMKQRFLENQADNATNGANLKNTKSLSMLDHLRFYLPEMYPNLYKILLLDDDVVVQKDLTGLWKIDLDGKVNGAVEICFGSFHRYAQYLNFSHPLIKESFNPKSCAWAYGMNIFNLDAWRREKCTDNYHYWQNLNEDQTLWKAGTLSPGLITFYSTTKSLDKSWHVLGLGYNPSISMDEISNAAVIHYNGDMKPWLDIALNQYKNLWTKYVDNDMEFVQMCNFGL*







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