Glyma19g05040 - SoyBase

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Report for Sequence Feature Glyma19g05040

Feature Type:	gene_model
Chromosome:	Gm19
Start:	5292401
stop:	5295263
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g05040

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G02340	AT	Annotation by Michelle Graham. TAIR10: RING/U-box superfamily protein \| chr3:477032-478261 FORWARD LENGTH=409	SoyBase	E_val: 3.00E-45	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
PTHR22763	Panther	RING ZINC FINGER PROTEIN	JGI		ISS
UniRef100_G7ZV10	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: E3 ubiquitin-protein ligase RNF181 n=1 Tax=Medicago truncatula RepID=G7ZV10_MEDTR	SoyBase	E_val: 7.00E-88	ISS
UniRef100_I1N6H9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N6H9_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma19g05040

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g05040

Paralog	Evidence	Comments
Glyma13g06960	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g05040 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g037800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g05040

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma19g05040

Limit To All Plant Sequences

>Glyma19g05040.1   sequence type=CDS   gene model=Glyma19g05040   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTAATCATCATCATTCCTCCAATCCCTTCGCATCATCCTCATCCACTCACTCCGATTCCGATTCCGACTCAGTGAGTTGCTTCGTCACCGATCTCTTCGAAACTCGCCTCTGCTCCTGCGACGACGACACTGACATAAACCCCTTTTCCGACGTCGTTTGCGACCTCCACCGTACGGAGCATGTGTTAGGGTTAGGGTTTGGCGTTGAAATTGATCCCCATAGCCAAACGAATGGGGATAATCATCATCGTGATCGGGTTTTCGATGCTGATAGAGTTTTCAATTTCACGGTGGGGGATGGTTCGAGCGGGGTTAGGGTTGTAGGGTTTGGTTTGGATTCCGAATCGAGTAGCGAGGAGGGTGGGATTCGCGATGGCGGTGGGTTTGAGGATTTCGATGCTCGATTGTGTTGGGATAGTCTCTGTTTGGAGGATCAGAGGACGCTGAATGAGGGGTTTGAATGGGAGGAGGTGGAGGAGAGGGTGAACGAGAGAGAGGATTTGGGTTTGGTGGTTGATGAGGTTGAGATTGAAATTGAAGGTGATGATGGCGATGGGAATTCGGTGGCGTCAGGGTTCACTAATGCCGTTGAGGAGGAAGAAGAGGAGGAGGAGGAGGATGCCGGGGAAGAGGCGCTGAGGTACCTCGAATGGGAGATTCTCTTGGCGGTTAACAATTCGGAGAGGAATGTGAATGGTGTGTTGGAGCACGAGGGCAATGCTGTTGGTGGTGCTGATTTCTTAACAATTCAGGATGGTTATGTGTATGCCGCAGAGTATGATGTTTTGTTCGGGCAGTTTCTTGAGAATGAGAGTGCCTTGAAGGGAAGCCCTCCGGCTGCGAAGAGTGTTGTGGAGAGTCTCCCGTTGGTGGAGTTGTCGAAGGAGGAGTTGTTGCAGGGGAAGAACGTGGCGTGCGCCATTTGCAAAGATGAGATTTTGTTGGAGGAGAAGGTCCGGAGGTTGCCTTGCTCGCATTGTTATCACGGGGACTGCATTTTTCCGTGGTTGGGCATTCGCAACACGTGCCCGGTTTGTCGGTTTGAGCTGCCCACAGATGATCCGGACTATGAGCAGGGGAAGGTCAATAGGGCTGCTCGTGGTCTGTTGGAGCTTGCGGCAGCACGGATGCAATTTTGA

Predicted protein sequences of Glyma19g05040

Limit To All Plant Sequences

>Glyma19g05040.1   sequence type=predicted peptide   gene model=Glyma19g05040   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSNHHHSSNPFASSSSTHSDSDSDSVSCFVTDLFETRLCSCDDDTDINPFSDVVCDLHRTEHVLGLGFGVEIDPHSQTNGDNHHRDRVFDADRVFNFTVGDGSSGVRVVGFGLDSESSSEEGGIRDGGGFEDFDARLCWDSLCLEDQRTLNEGFEWEEVEERVNEREDLGLVVDEVEIEIEGDDGDGNSVASGFTNAVEEEEEEEEEDAGEEALRYLEWEILLAVNNSERNVNGVLEHEGNAVGGADFLTIQDGYVYAAEYDVLFGQFLENESALKGSPPAAKSVVESLPLVELSKEELLQGKNVACAICKDEILLEEKVRRLPCSHCYHGDCIFPWLGIRNTCPVCRFELPTDDPDYEQGKVNRAARGLLELAAARMQF*

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