Glyma19g05000 - SoyBase

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Report for Sequence Feature Glyma19g05000

Feature Type:	gene_model
Chromosome:	Gm19
Start:	5249191
stop:	5254195
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g05000

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G38820	AT	Annotation by Michelle Graham. TAIR10: Transmembrane amino acid transporter family protein \| chr5:15543481-15545182 FORWARD LENGTH=456	SoyBase	E_val: 0	ISS
GO:0006865	GO-bp	Annotation by Michelle Graham. GO Biological Process: amino acid transport	SoyBase	N/A	ISS
GO:0071281	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular response to iron ion	SoyBase	N/A	ISS
GO:0071369	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular response to ethylene stimulus	SoyBase	N/A	ISS
GO:0071732	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular response to nitric oxide	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0005275	GO-mf	Annotation by Michelle Graham. GO Molecular Function: amine transmembrane transporter activity	SoyBase	N/A	ISS
GO:0015171	GO-mf	Annotation by Michelle Graham. GO Molecular Function: amino acid transmembrane transporter activity	SoyBase	N/A	ISS
KOG1305	KOG	Amino acid transporter protein	JGI		ISS
PTHR22950	Panther	AMINO ACID TRANSPORTER	JGI		ISS
PF01490	PFAM	Transmembrane amino acid transporter protein	JGI		ISS
UniRef100_G7KS18	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Amino acid transporter n=1 Tax=Medicago truncatula RepID=G7KS18_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1N6H6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N6H6_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma19g05000

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g05000

Paralog	Evidence	Comments
Glyma13g06930	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g05000 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g037500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g05000

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma19g05000

Limit To All Plant Sequences

>Glyma19g05000.1   sequence type=CDS   gene model=Glyma19g05000   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACAATTGGAAGTATTGAGCATAAGGCAAAGAAGACAAAATCAAGGAAGAACAAAGTAGTTGTTGATGAGAAGACACCTTTGATACCGAAGACTCATGATGCTGATGCTGAAGGCTTAGATGAATTCAATGGTGCTTCATTTTCTGGGGCAGTTTTCAACTTATCCACCACAGCTATTGGTGCTGGGATCATGGGGTTACCAGCATGTGTGAAAAAGTTGGGAATGGTTCCTGGTCTTCTTGCTATAATCTTAACTGCTTTGTTGACAGAGAAGTCAATTGGGTTCATGATCAGGAATTCCCGTGCAGGGAATCTTTCTTCTTATGGGAATCTCGTGGGGGATTCATTTGGCAAATTCGGAAAAGCTCTTGTGCAGATATGTGTTATAATCAACAACATTGGAATGCTTATTATTTACATGATTATTATTGGTGACGTGATTTCTGGAACATCTTCTAGTGAAATTCATCATTCTGGTGTACTTGAAGGATGGTTTGGAGTTCACTGGTGGACAGGACGTACATTTGTTCTTCTTTTTACAACATTTGCTGTGTTTGCACCTTTGTCTTGCTTCAAGCGAATTGATTCGTTGAGATACACTTCTGCATTATCATTTGGCTTAGCAGTTGCTTTTCTTGTTATTGCTGTGGGAATCTCAATTTTCAAGATTGCAATTGGAGGCATTGGGATGCCCAGACTCTTCCCGATCATTACTGATGTGGCCTCAGTTTTTGAACTGTTTACTGTAACTCCTGTGGTTGTGACAGCCTATCTGTGCCACTTCAATGTTCACAGCATAGATAATGAACTGGAGGACTCCTCACAGATACACGGGATTGTGCGTACTTCCCTTACTCTATGTGCTTCAGTGTACTTACTGACAAGCTTCTTTGGCTTCCTCCTATTTGGTGAAGGAACTCTTGATGATGTGCTTGCCAATTTTGATTCTGATCTGGGAATCCCTTTTGGTTCTGTGCTCAATGACGCTGTCCGTTTTAGCTATGCTGCGCATCTTGTGCTTGTATTTCCAGTTGTCTTCTATGCAGTGCGGATCAACCTTGATGGTCTCATATTTCCATCATCTAGGCCTTTGGTTCTAGATAACTTCAGATTTGCATCAATTACTATGGCCCTTATTGTTGCTTCCTTTTTGGGAGCAAATTTCATACCCAGCATTTGGGATATTTTCCAGTTCACTGGAGCAACAGCTGCTGCAAGTTTATCATTCATATTTCCATCTGCCATCACCCTAAGGGATCGGTACAACATCGGAACTAAAAAAGACAAGATTCTATCAGTCTTTATGATAGTCCTCGCAGTCTTCGCGAATGTTGTGGCTGTATACAGTGATGCCTTTGCCCTGATCAAGAATAGTACAACTAAACGTGAGTGA

Predicted protein sequences of Glyma19g05000

Limit To All Plant Sequences

>Glyma19g05000.1   sequence type=predicted peptide   gene model=Glyma19g05000   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTIGSIEHKAKKTKSRKNKVVVDEKTPLIPKTHDADAEGLDEFNGASFSGAVFNLSTTAIGAGIMGLPACVKKLGMVPGLLAIILTALLTEKSIGFMIRNSRAGNLSSYGNLVGDSFGKFGKALVQICVIINNIGMLIIYMIIIGDVISGTSSSEIHHSGVLEGWFGVHWWTGRTFVLLFTTFAVFAPLSCFKRIDSLRYTSALSFGLAVAFLVIAVGISIFKIAIGGIGMPRLFPIITDVASVFELFTVTPVVVTAYLCHFNVHSIDNELEDSSQIHGIVRTSLTLCASVYLLTSFFGFLLFGEGTLDDVLANFDSDLGIPFGSVLNDAVRFSYAAHLVLVFPVVFYAVRINLDGLIFPSSRPLVLDNFRFASITMALIVASFLGANFIPSIWDIFQFTGATAAASLSFIFPSAITLRDRYNIGTKKDKILSVFMIVLAVFANVVAVYSDAFALIKNSTTKRE*

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