Glyma19g04920 - SoyBase

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Report for Sequence Feature Glyma19g04920

Feature Type:	gene_model
Chromosome:	Gm19
Start:	5149931
stop:	5152660
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g04920

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G49550	AT	Annotation by Michelle Graham. TAIR10: Putative homolog of mammalian BLOC-1 Subunit 2. Protein - protein interaction with BLOS1. \| chr5:20106702-20107156 REVERSE LENGTH=127	SoyBase	E_val: 1.00E-48	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0010048	GO-bp	Annotation by Michelle Graham. GO Biological Process: vernalization response	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
KOG4559	KOG	Uncharacterized conserved protein	JGI		ISS
PTHR10668	Panther	PHYTOENE DEHYDROGENASE	JGI		ISS
PTHR10668:SF1	Panther	gb def: Hypothetical protein	JGI		ISS
PF10046	PFAM	Biogenesis of lysosome-related organelles complex-1 subunit 2	JGI		ISS
UniRef100_B6T1S5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Phytoene dehydrogenase-like n=1 Tax=Zea mays RepID=B6T1S5_MAIZE	SoyBase	E_val: 9.00E-42	ISS
UniRef100_I1N6H2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N6H2_SOYBN	SoyBase	E_val: 5.00E-89	ISS

Expression Patterns of Glyma19g04920

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma19g04920 not represented in the dataset	Glyma19g04920 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g04920

Paralog	Evidence	Comments
Glyma13g06900	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g04920 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g037000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g04920

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma19g04920

Limit To All Plant Sequences

>Glyma19g04920.1   sequence type=CDS   gene model=Glyma19g04920   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATAATATGAAGAAAGATGAAACCCAAGATCGGAAGCAAGATGAACTTGCTGAATCGCTTGATGGTCTATTCAGTAGCGTTTCCACCATGATCAAATCAGAGCTTCAGGGGACAAATAATCACCTAGAGCTGTTGGAGAAGATGAATGTAAGAGTGGCAGAAGAGTACAAAGGGTTCGGTGACTTGGCTTCAGGGTTGAGGGTTTTTGTGGAGCAGTTGAAATGCAAGAGTGGTAGCTTTAACGAGTATGTTGAGCAGATTGATAACATTGAGAAGCAAGTAACTGAGTTTGAAGCTGTGGTCTCTATGCTTGATAAGTACGTTGTATTGTTGGAATCAAGAGTGCAATCTGTGTACCAAAACAAAATCCATCTTCCCATTCCACAATGA

Predicted protein sequences of Glyma19g04920

Limit To All Plant Sequences

>Glyma19g04920.1   sequence type=predicted peptide   gene model=Glyma19g04920   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDNMKKDETQDRKQDELAESLDGLFSSVSTMIKSELQGTNNHLELLEKMNVRVAEEYKGFGDLASGLRVFVEQLKCKSGSFNEYVEQIDNIEKQVTEFEAVVSMLDKYVVLLESRVQSVYQNKIHLPIPQ*

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