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Report for Sequence Feature Glyma19g04920

Feature Type:gene_model
Chromosome:Gm19
Start:5149931
stop:5152660
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G49550AT Annotation by Michelle Graham. TAIR10: Putative homolog of mammalian BLOC-1 Subunit 2. Protein - protein interaction with BLOS1. | chr5:20106702-20107156 REVERSE LENGTH=127 SoyBaseE_val: 1.00E-48ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0010048GO-bp Annotation by Michelle Graham. GO Biological Process: vernalization response SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
KOG4559 KOG Uncharacterized conserved protein JGI ISS
PTHR10668Panther PHYTOENE DEHYDROGENASE JGI ISS
PTHR10668:SF1Panther gb def: Hypothetical protein JGI ISS
PF10046PFAM Biogenesis of lysosome-related organelles complex-1 subunit 2 JGI ISS
UniRef100_B6T1S5UniRef Annotation by Michelle Graham. Most informative UniRef hit: Phytoene dehydrogenase-like n=1 Tax=Zea mays RepID=B6T1S5_MAIZE SoyBaseE_val: 9.00E-42ISS
UniRef100_I1N6H2UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N6H2_SOYBN SoyBaseE_val: 5.00E-89ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma19g04920 not represented in the dataset

Glyma19g04920 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma13g06900 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.19g037000 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma19g04920.1   sequence type=CDS   gene model=Glyma19g04920   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATAATATGAAGAAAGATGAAACCCAAGATCGGAAGCAAGATGAACTTGCTGAATCGCTTGATGGTCTATTCAGTAGCGTTTCCACCATGATCAAATCAGAGCTTCAGGGGACAAATAATCACCTAGAGCTGTTGGAGAAGATGAATGTAAGAGTGGCAGAAGAGTACAAAGGGTTCGGTGACTTGGCTTCAGGGTTGAGGGTTTTTGTGGAGCAGTTGAAATGCAAGAGTGGTAGCTTTAACGAGTATGTTGAGCAGATTGATAACATTGAGAAGCAAGTAACTGAGTTTGAAGCTGTGGTCTCTATGCTTGATAAGTACGTTGTATTGTTGGAATCAAGAGTGCAATCTGTGTACCAAAACAAAATCCATCTTCCCATTCCACAATGA

>Glyma19g04920.1   sequence type=predicted peptide   gene model=Glyma19g04920   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDNMKKDETQDRKQDELAESLDGLFSSVSTMIKSELQGTNNHLELLEKMNVRVAEEYKGFGDLASGLRVFVEQLKCKSGSFNEYVEQIDNIEKQVTEFEAVVSMLDKYVVLLESRVQSVYQNKIHLPIPQ*







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