SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G30820 | AT | Annotation by Michelle Graham. TAIR10: cyclin-dependent kinase-activating kinase assembly factor-related / CDK-activating kinase assembly factor-related | chr4:15007144-15008378 FORWARD LENGTH=178 | SoyBase | E_val: 4.00E-64 | ISS |
| GO:0007049 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell cycle | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| PTHR12683 | Panther | FAMILY NOT NAMED | JGI | ISS | |
| PTHR12683:SF3 | Panther | TRANSCRIPTION/REPAIR FACTOR TFIIH | JGI | ISS | |
| PF06391 | PFAM | CDK-activating kinase assembly factor MAT1 | JGI | ISS | |
| UniRef100_C6SW25 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6SW25_SOYBN | SoyBase | E_val: 2.00E-135 | ISS |
| UniRef100_G7KI90 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: CDK-activating kinase assembly factor MAT1 n=1 Tax=Medicago truncatula RepID=G7KI90_MEDTR | SoyBase | E_val: 1.00E-106 | ISS |
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Glyma19g04910 not represented in the dataset |
Glyma19g04910 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.19g036900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma19g04910.3 sequence type=transcript gene model=Glyma19g04910 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GTGACTCTCTGTGACGCATCTGCAGCGTCTTCCTCCGTGGCGTGGCTTGTTAAGGTAAGCCCTTCTTCCTCTCTTTTCTCGTTCTTACTCTTCAATGGTGCTCTTTCTTTCTTTCACCTTTTCTCTCTGAACAACAATACTCTTCGCGACAACAAAAACCAAGAACGAAGTGCACTATTATTACGTGTTTTCAATCTCTCACCCATTTCCTTCTTCAGAGTCTCTCTCTGTTTCCAACTTGGTAGCGCTGTGAGAGAGTTTAAGCTTTTCTCTTTTACCCTCTGGTGTGAAAAGTGAAAGAGGGAACAAGAAGTTGACGGTAGCAGAATGGTGGTCTCCAGTACAAATCCCCACAATAAGGAGATAGCTATCAGGAGGAGGATTGCTAGCATATTTAATAAACGTGAAGATGATTTCCCATCTTTGAGAGAATACAATGATTACTTGGAGGAAGTAGAGGACATGACATTTAACTTGATTGAAGGAATAGATGTTTCAGATATTGAAGCAAAAATTGCCAAATACCAGGAAGAAAATGCAGAACAAATAATGATTAATCGAGCTCGGAAGGCTGAAGAATTAGCTGCAGCTATGGCAGCAAGTAAGGGACAACCTGCACAAACTGATGATGATTCAGCCACAAACCAAAACTCCCAAGCAGGATTTGGAGCTGTTCCTCAAGGACAATATGCACCTACATTTGCAGGAGGACAGCCAAGGCCTACAGGCATGGCCCCACAGCCTTTACCACTCGGAGGGGGCGACATGCCGGGCTTTGCAGGTGATGATGAGGAAACCAAGAGGCTACGAACTGAGAGGGCTGGAGGATGGAGTGGAGATATTAGTAGGAAAAGGGCACTTGAAGAAGCCTTTGGAAGCATCTGGGTTTGCTGAGACAATAATAATCATGCAAGGCTGGACATGCTTATTTTAAAATGGTGTTTAGATACTTTCTAAATCCTAAGGGCATGCAAATTCCAGTGTCACAGAAGCTATTTTGGCATGGATATTGCGATGTAAATGGTGTAGAATGTAGATTTGTTGAATTTTGTTCTGTGAACCATATTGAATTTTATTGTAAGGGGCTTTGGCTTTTCTTTTTAAACTATTCTCTTTCTCCCTTTTCTTTGAAGATGTTATTTGTTTATAGAAAGACTTTAATTTGAAATGAAGAATTTGGGAAAAACAAAAATTATGCCATAGATTACAAATTGAATATTTGAAT
>Glyma19g04910.2 sequence type=CDS gene model=Glyma19g04910 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGTGGTCTCCAGTACAAATCCCCACAATAAGGAGATAGCTATCAGGAGGAGGATTGCTAGCATATTTAATAAACGTGAAGATGATTTCCCATCTTTGAGAGAATACAATGATTACTTGGAGGAAGTAGAGGACATGACATTTAACTTGATTGAAGGAATAGATGTTTCAGATATTGAAGCAAAAATTGCCAAATACCAGGAAGAAAATGCAGAACAAATAATGATTAATCGAGCTCGGAAGGCTGAAGAATTAGCTGCAGCTATGGCAGCAAGTAAGGGACAACCTGCACAAACTGATGATGATTCAGCCACAAACCAAAACTCCCAAGCAGGATTTGGAGCTGTTCCTCAAGGACAATATGCACCTACATTTGCAGGAGGACAGCCAAGGCCTACAGGCATGGCCCCACAGCCTTTACCACTCGGAGGGGGCGACATGCCGGGCTTTGCAGGTGATGATGAGGAAACCAAGAGGCTACGAACTGAGAGGGCTGGAGGATGGAGTGGAGATATTAGTAGGAAAAGGGCACTTGAAGAAGCCTTTGGAAGCATCTGGGTTTGCTGA >Glyma19g04910.3 sequence type=CDS gene model=Glyma19g04910 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGTGGTCTCCAGTACAAATCCCCACAATAAGGAGATAGCTATCAGGAGGAGGATTGCTAGCATATTTAATAAACGTGAAGATGATTTCCCATCTTTGAGAGAATACAATGATTACTTGGAGGAAGTAGAGGACATGACATTTAACTTGATTGAAGGAATAGATGTTTCAGATATTGAAGCAAAAATTGCCAAATACCAGGAAGAAAATGCAGAACAAATAATGATTAATCGAGCTCGGAAGGCTGAAGAATTAGCTGCAGCTATGGCAGCAAGTAAGGGACAACCTGCACAAACTGATGATGATTCAGCCACAAACCAAAACTCCCAAGCAGGATTTGGAGCTGTTCCTCAAGGACAATATGCACCTACATTTGCAGGAGGACAGCCAAGGCCTACAGGCATGGCCCCACAGCCTTTACCACTCGGAGGGGGCGACATGCCGGGCTTTGCAGGTGATGATGAGGAAACCAAGAGGCTACGAACTGAGAGGGCTGGAGGATGGAGTGGAGATATTAGTAGGAAAAGGGCACTTGAAGAAGCCTTTGGAAGCATCTGGGTTTGCTGA
>Glyma19g04910.2 sequence type=predicted peptide gene model=Glyma19g04910 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MVVSSTNPHNKEIAIRRRIASIFNKREDDFPSLREYNDYLEEVEDMTFNLIEGIDVSDIEAKIAKYQEENAEQIMINRARKAEELAAAMAASKGQPAQTDDDSATNQNSQAGFGAVPQGQYAPTFAGGQPRPTGMAPQPLPLGGGDMPGFAGDDEETKRLRTERAGGWSGDISRKRALEEAFGSIWVC* >Glyma19g04910.3 sequence type=predicted peptide gene model=Glyma19g04910 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MVVSSTNPHNKEIAIRRRIASIFNKREDDFPSLREYNDYLEEVEDMTFNLIEGIDVSDIEAKIAKYQEENAEQIMINRARKAEELAAAMAASKGQPAQTDDDSATNQNSQAGFGAVPQGQYAPTFAGGQPRPTGMAPQPLPLGGGDMPGFAGDDEETKRLRTERAGGWSGDISRKRALEEAFGSIWVC*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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