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Report for Sequence Feature Glyma19g04853

Feature Type:gene_model
Chromosome:Gm19
Start:5072303
stop:5074681
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma19g04853
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G42130AT Annotation by Michelle Graham. TAIR10: Mitochondrial substrate carrier family protein | chr5:16835572-16836810 REVERSE LENGTH=412 SoyBaseE_val: 8.00E-31ISS
GO:0006810GO-bp Annotation by Michelle Graham. GO Biological Process: transport SoyBaseN/AISS
GO:0006826GO-bp Annotation by Michelle Graham. GO Biological Process: iron ion transport SoyBaseN/AISS
GO:0010039GO-bp Annotation by Michelle Graham. GO Biological Process: response to iron ion SoyBaseN/AISS
GO:0005739GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0009536GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plastid SoyBaseN/AISS
GO:0009941GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope SoyBaseN/AISS
PTHR24089Panther FAMILY NOT NAMED JGI ISS
PTHR24089:SF45Panther SUBFAMILY NOT NAMED JGI ISS
PF00153PFAM Mitochondrial carrier protein JGI ISS
UniRef100_B9SJF9UniRef Annotation by Michelle Graham. Most informative UniRef hit: Mitochondrial carrier protein, putative n=1 Tax=Ricinus communis RepID=B9SJF9_RICCO SoyBaseE_val: 1.00E-30ISS
UniRef100_I1JDG6UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JDG6_SOYBN SoyBaseE_val: 4.00E-40ISS

Expression Patterns of Glyma19g04853
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma19g04853 not represented in the dataset
Glyma19g04853 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma19g04853 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.19g036500 Wm82.a2.v1IGC As supplied by JGI

References for Glyma19g04853
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma19g04853
>Glyma19g04853.2   sequence type=transcript   gene model=Glyma19g04853   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTTGCGACTCCCCCTGCAGGGTTCCGAAGCTGTCGTAAGAGGGACCAAGGCCACCTCTCCATCATGTCATCAGCGATCATGGTCCCGAAGAAGCTCATGACGCAACGAAAGCAAGCCAATGCGAAGGGCCGCTTGTGACAAGTGTTTGCTGAAATTATTCAAAACGATGGCGTGATGGGCCTCTACGTTGGCTACTCCACAACATTGCTCGGAAACTTACCTGCAGGAGTTCTGAGTTACTCTTCTTTCGAGTATTTGAAAGCCGTGATGCTTTAGAAGACTAAGCAGAGTTACCTGGAATCAGTGCAGAGTGTTCTGTGTGGGGCCCTCGCCGAGGCGATATCGACATTGCTCACGATGCCTTTGGATGACATAGGTTGATGACGCAGGTTCGGGGCGTGGGGGTGAGCAAGGTTGTTGCGGTTATGTACGATGGAGTTTCGGCCACGGTGAAGGAGATTTTGAAGGAGGAAGGGTGGGTGGGGCTTACCCGTGGAATGGGGCCCCAGGTGCTGCATAGTGCTTGTTTTTCGGCATTGGGGTATTTTTCTTTTGAGACAACGAGGCTTTCGATTTTGCGGGAGTATCTTAGGAGGAAGGAGTTGGGTGAGAGGGAAATTGAAGTCCCTGTTTCCGATGGCTGAGTTTGTGTTTTGGTTCTTTATTGCTTCTTTTTCATTTGGGCTTTGAATTACAGTTACTTACTTCATGTAAAATATTTCAGTAGATAAGAAGTATTTTGTTCTGGAAAATTAGCTACTCCCATGGCATAAACAAAATGTAGGTGCTGAAATTTTTCTTATCTTGGTTACAATAAAGTGACTTTGCTGATTCCTGGTCTCGGTGTTAGAAGTTTAGGATTGGATGAGCAATGAATTTAGGATCTTCTGTTTCTAAGTTTTTGTTTAGGATAAGGCAGATTGATTTGGGCATGGCTCTTGTGTCCTTCTTTTATGAGCTGGAAATGTCAGGCATAAGTAGTGTTTTGCTGTGCAGAGTTGGTCTCAGAGGAAAAAATTGAATACAATGATCTTGTAAAGTCAGTTCTCGATGGGAACTCTTCAAATAATGATGAACACACCAATATCCAGACAGTCCAGCCAGATAAACAAAAGGATGTGCCCCAAAAATGGTAAATGCAAAATAAAAGTAAATAATTCTCTTTCAAATATAGATTTTCTTGTTAATATTAAGGACGATCAATCTTGACTCTTGAGCATATACTGTTTTGACATTGTTATAGAAATCCTGTGTGATGCATTAATTGAATCTTGACTCTTAGGTTTATATTTGAAAATAAAATATAAAAAAAACAAAAAAAAAACAGCATTTGTTTATTCAGTTGTCACATGGCAAATTGCTAAGTCTAATAAAATAACACTAGAAAACCCAACCCGTGCTTTGCACGGTTATGGAACAAAAGCAACCCAATATTCTAATAAAATAAAAAAAACCAAACAATGCAGAGTGTGCACGGTGAAATATTTGACAAGTATTACTTTAGTATTTTTAATTAAGATTTTAAACAAGTATGATATTAAAGGTCATAAAACAGTCAGAA
Coding sequences of Glyma19g04853
>Glyma19g04853.1   sequence type=CDS   gene model=Glyma19g04853   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACGCAGGTTCGGGGCGTGGGGGTGAGCAAGGTTGTTGCGGTTATGTACGATGGAGTTTCGGCCACGGTGAAGGAGATTTTGAAGGAGGAAGGGTGGGTGGGGCTTACCCGTGGAATGGGGCCCCAGGTGCTGCATAGTGCTTGTTTTTCGGCATTGGGGTATTTTTCTTTTGAGACAACGAGGCTTTCGATTTTGCGGGAGTATCTTAGGAGGAAGGAGTTGGGTGAGAGGGAAATTGAAGTCCCTGTTTCCGATGGCTGA

>Glyma19g04853.2   sequence type=CDS   gene model=Glyma19g04853   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACGCAGGTTCGGGGCGTGGGGGTGAGCAAGGTTGTTGCGGTTATGTACGATGGAGTTTCGGCCACGGTGAAGGAGATTTTGAAGGAGGAAGGGTGGGTGGGGCTTACCCGTGGAATGGGGCCCCAGGTGCTGCATAGTGCTTGTTTTTCGGCATTGGGGTATTTTTCTTTTGAGACAACGAGGCTTTCGATTTTGCGGGAGTATCTTAGGAGGAAGGAGTTGGGTGAGAGGGAAATTGAAGTCCCTGTTTCCGATGGCTGA
Predicted protein sequences of Glyma19g04853
>Glyma19g04853.1   sequence type=predicted peptide   gene model=Glyma19g04853   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTQVRGVGVSKVVAVMYDGVSATVKEILKEEGWVGLTRGMGPQVLHSACFSALGYFSFETTRLSILREYLRRKELGEREIEVPVSDG*

>Glyma19g04853.2   sequence type=predicted peptide   gene model=Glyma19g04853   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTQVRGVGVSKVVAVMYDGVSATVKEILKEEGWVGLTRGMGPQVLHSACFSALGYFSFETTRLSILREYLRRKELGEREIEVPVSDG*






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