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Report for Sequence Feature Glyma19g04836

Feature Type:gene_model
Chromosome:Gm19
Start:5056040
stop:5057438
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G08510AT Annotation by Michelle Graham. TAIR10: phospholipase C 2 | chr3:2582626-2585556 REVERSE LENGTH=552 SoyBaseE_val: 8.00E-43ISS
GO:0006629GO-bp Annotation by Michelle Graham. GO Biological Process: lipid metabolic process SoyBaseN/AISS
GO:0007165GO-bp Annotation by Michelle Graham. GO Biological Process: signal transduction SoyBaseN/AISS
GO:0030048GO-bp Annotation by Michelle Graham. GO Biological Process: actin filament-based movement SoyBaseN/AISS
GO:0035556GO-bp Annotation by Michelle Graham. GO Biological Process: intracellular signal transduction SoyBaseN/AISS
GO:0051645GO-bp Annotation by Michelle Graham. GO Biological Process: Golgi localization SoyBaseN/AISS
GO:0051646GO-bp Annotation by Michelle Graham. GO Biological Process: mitochondrion localization SoyBaseN/AISS
GO:0060151GO-bp Annotation by Michelle Graham. GO Biological Process: peroxisome localization SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0004435GO-mf Annotation by Michelle Graham. GO Molecular Function: phosphatidylinositol phospholipase C activity SoyBaseN/AISS
GO:0004629GO-mf Annotation by Michelle Graham. GO Molecular Function: phospholipase C activity SoyBaseN/AISS
GO:0008081GO-mf Annotation by Michelle Graham. GO Molecular Function: phosphoric diester hydrolase activity SoyBaseN/AISS
PTHR10336Panther PHOSPHOLIPASE C-RELATED JGI ISS
PTHR10336:SF35Panther PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY P JGI ISS
PF09279PFAM Phosphoinositide-specific phospholipase C, efhand-like JGI ISS
UniRef100_Q43443UniRef Annotation by Michelle Graham. Most informative UniRef hit: Phosphoinositide-specific phospholipase C P13 n=1 Tax=Glycine max RepID=Q43443_SOYBN SoyBaseE_val: 7.00E-71ISS
UniRef100_UPI000233E1C0UniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233E1C0 related cluster n=1 Tax=unknown RepID=UPI000233E1C0 SoyBaseE_val: 3.00E-86ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma19g04836 not represented in the dataset

Glyma19g04836 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Corresponding NameAnnotation VersionEvidenceComments

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma19g04836.1   sequence type=CDS   gene model=Glyma19g04836   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACGTCAAAACAAACATACAGTGTGTGCTTCTACTGGCGGCAGTGGCTCAAGCTGGTGCTGGCGGAGGTGCCGTCAGAAATCAAGACCCTGTTCGATGAGTATTCCGAGAATGAGCTCATGACACCTTCGCATCTCAAGAGATTCTTGATCGAAAGGCAAGAGAAGGCCACTGAAGAAGACACACAAGCCATCATTAATAGGTTTAGGCATTTCCATCACAAAGGGGTTGGCCTCAATCTTGAAACTTTCTTTAAGTACCTCTTTAGTGAAGATAATCCTCCTCTTCTTCCTTCTCATGGGGTGCACCATGATATGACTTTACCCTTGTCACATTATTTCATATATACTGGCCATAATTCCTATTTAACTGGGAATTAG

>Glyma19g04836.1   sequence type=predicted peptide   gene model=Glyma19g04836   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTSKQTYSVCFYWRQWLKLVLAEVPSEIKTLFDEYSENELMTPSHLKRFLIERQEKATEEDTQAIINRFRHFHHKGVGLNLETFFKYLFSEDNPPLLPSHGVHHDMTLPLSHYFIYTGHNSYLTGN*







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