SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G15740 | AT | Annotation by Michelle Graham. TAIR10: O-fucosyltransferase family protein | chr5:5134788-5136956 REVERSE LENGTH=508 | SoyBase | E_val: 0 | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0005794 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus | SoyBase | N/A | ISS |
| GO:0016757 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring glycosyl groups | SoyBase | N/A | ISS |
| PF10250 | PFAM | GDP-fucose protein O-fucosyltransferase | JGI | ISS | |
| UniRef100_I1N6G6 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N6G6_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_Q93ZR8 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: O-fucosyltransferase-like protein n=3 Tax=Arabidopsis thaliana RepID=Q93ZR8_ARATH | SoyBase | E_val: 0 | ISS |
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Glyma19g04820 not represented in the dataset |
Glyma19g04820 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.19g036400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma19g04820.3 sequence type=transcript gene model=Glyma19g04820 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATTCTCTTTTATATCAACTCTTTCCATTTTCCTTCTCCACCTCTCTTCTCCGGCGACCCTCGCCGGAATCTCACCAGAAAATCCCGCCGGAAAACTATATTTCCCATTTTGCAAATTCACTTTCCTCACCATTGTTGTTCCAAGTATCACAAAGCTCAAAACACACTTTTAAATAGCTTCTTCTCTTCTTCATATGTGTTGATATTCATTCACTACAGCAATGCGATTGAAAACCTGTGAATATTAGACCCATTTGAGTGAATTTCAATTCAAATTCATAACTTTGCTTCTGGTATTTTTTAAGCCTTGGATTGAAGACTGAGGAGCTAACCTAACGCCACTGATTAGGGTGTAAACTGTGTAAGCGGAAAGTGAAGGGGAAATATAAAAAGGCAATGATGTTGAGGTGGGCAAAGATGTCTGATGGAAAAGGTGATCACTGTGACAGTGAGGAGATGGAGATGGGGTTCAATGTTTTGGGTGGTGGTGATGAAATTGTCAAGTCCAAGAGGTTGATTGTGAGACCTGGGATCAAGGTGTGGATGGCCCGTGCCATCACTACAGTGATACTTTGGACTTGTGTGGTTCAGCTGATGGCAATTGGGGAGTTGAGGGGACCAAGGTTGTTGAAGGGCATGCCTTATTGTTTCAGCCACCAAGATGCATCTCAACCTATGTCAAACGCTTATGTTCCTGCAAGAGTTGTGCTCCCACCAAAAAGGATTCATAAGAATAATGGTTATCTTGTAGTTTCATGCAATGGAGGACTCAACCAAATGCGAGCAGCAATATGTGACATGGTTGCTATTGCAAGACATTTAAATGTTACTCTCATAGTTCCAGAGCTGGATAAAACTTCTTTCTGGGCTGATCCAAGTGAGTTCCAAGACATATTTGATGTAGATAATTTCATTGGATCCTTAAGAGATGAAGTTAGAATATTAAAGCAACTACCACCTAGGCCCAAGAGAAGAGTTGAACGAGGATTATTCTACTCATTGCCTCCAGTTAGCTGGTCCAATATTTCTTACTATGAAAAGCAGATCCTGCCTCTGTTACTGAAACACAAGGTTGTGCACCTGAATAGAACAGATGCTCGACTTGCGAATAATGGGCTGCCTCTGGAGATTCAAAAGCTGCGATGCCGAGTGAATTTTAATGCTCTGAGGTTTACTTCCCAGATAGAGCAACTTGGTAGGAGGATAATCAGAATTTTGAGGGAAAAGGGACCCTTCCTTGTACTTCATCTTAGATATGAGATGGACATGTTGGCCTTCTCTGGCTGTACTCATGGATGTGACGGCAGGGAGGTGGAGGAACTCACAAGAATGAGGTATGCTTATCCCTGGTGGAAGGAAAAAGTCATTAATTCTGAGCTTAAGAGACAAGATGGCTTATGCCCTTTGACACCTGAGGAAACTACACTAATATTGACAGCTCTAGGCATAGATCAAAATATCCAAATTTATATTGCTGCTGGAGAAATATATGGCGGACAGAGAAGGATGGCAAGTTTGCAAGCAGCTTTTCCTAATTTGGTGAGGAAGGAAACTCTGTTGGAACCTTCGGATTTGATGTATTTTCAAAACCACTCATCACAAATGGCTGCACTGGATTACCTTGTGTCTCTAGAGAGTGATATATTCATTCCAACATATGATGGCAACATGGCTAAAGTTGTGGAAGGCCATCGAAGATTTTTAGGCTTCAAAAGGACTATATTGCTTGATAGAAAGCATTTGGTGCACCTCATAGACCTATACACCAAAGGGTCATTAAGCTGGGATGAGTTTTCCATTATGGTGAAGAAATCTCATGCCAATAGGATGGGAAACCCCAAGAGAAGAGTTATCATCCCAGGCAGACCCAAAGAAGAAGACTATTTTTATGCGAATCCTCAAGAGTGTTTGCAATTTCAAGATGACCCATTCAGCAACACATGATCTTAATTATCTCATCTAACACGTGCCTCCTTGATACAGTTTCCTCCATCAGAAGGCAATGCCAATTGGTATTTACTTCAGGGGGAGGGCCCTCATTCTGTACATGAATTAGGTTCTCAATGAAAGCAAGAAATTGTGTGGCTATTCCTCACTAGAATCATTAAGATAAATTGGATAAATTTCATGTGTTGAGGAACAGGTTCTTGTGTAAAGCAACAGCAAAGTGGAGTTATATCTTCCATAGTGTAAAGAAGAGCAAAAGATATATTATTACTAATAACTCTTGTCTTTTTCTAATTTCAAAGATGGTTCTTCACATAATACTCAAAGTTGAGCCTTGAAATAATACAAGATGTAAAAGAACAACCCTTAAGTCTCTTCGAACCTTCTTGTCCATTAAGATATTGTATTTGCTTTATGCTGCATACGATAATTGTCTGTGATTATGTTTGTGGACCAAAATAAGATTAAGTGGGAAGACTCTAAAATGGGGTGGTAAGACTGAAAAATAGTTCGTTGAAGGTTATTGGTGGGCCAAGATTCATCATTAGCATTATAATATTTTTTGGTATTGTTTTAGGAATAACACCTACTTTTTTGTGGTTTAGGC
>Glyma19g04820.2 sequence type=CDS gene model=Glyma19g04820 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGATGTTGAGGTGGGCAAAGATGTCTGATGGAAAAGGTGATCACTGTGACAGTGAGGAGATGGAGATGGGGTTCAATGTTTTGGGTGGTGGTGATGAAATTGTCAAGTCCAAGAGGTTGATTGTGAGACCTGGGATCAAGGTGTGGATGGCCCGTGCCATCACTACAGTGATACTTTGGACTTGTGTGGTTCAGCTGATGGCAATTGGGGAGTTGAGGGGACCAAGGTTGTTGAAGGGCATGCCTTATTGTTTCAGCCACCAAGATGCATCTCAACCTATGTCAAACGCTTATGTTCCTGCAAGAGTTGTGCTCCCACCAAAAAGGATTCATAAGAATAATGGTTATCTTGTAGTTTCATGCAATGGAGGACTCAACCAAATGCGAGCAGCAATATGTGACATGGTTGCTATTGCAAGACATTTAAATGTTACTCTCATAGTTCCAGAGCTGGATAAAACTTCTTTCTGGGCTGATCCAAGTGAGTTCCAAGACATATTTGATGTAGATAATTTCATTGGATCCTTAAGAGATGAAGTTAGAATATTAAAGCAACTACCACCTAGGCCCAAGAGAAGAGTTGAACGAGGATTATTCTACTCATTGCCTCCAGTTAGCTGGTCCAATATTTCTTACTATGAAAAGCAGATCCTGCCTCTGTTACTGAAACACAAGGTTGTGCACCTGAATAGAACAGATGCTCGACTTGCGAATAATGGGCTGCCTCTGGAGATTCAAAAGCTGCGATGCCGAGTGAATTTTAATGCTCTGAGGTTTACTTCCCAGATAGAGCAACTTGGTAGGAGGATAATCAGAATTTTGAGGGAAAAGGGACCCTTCCTTGTACTTCATCTTAGATATGAGATGGACATGTTGGCCTTCTCTGGCTGTACTCATGGATGTGACGGCAGGGAGGTGGAGGAACTCACAAGAATGAGGTATGCTTATCCCTGGTGGAAGGAAAAAGTCATTAATTCTGAGCTTAAGAGACAAGATGGCTTATGCCCTTTGACACCTGAGGAAACTACACTAATATTGACAGCTCTAGGCATAGATCAAAATATCCAAATTTATATTGCTGCTGGAGAAATATATGGCGGACAGAGAAGGATGGCAAGTTTGCAAGCAGCTTTTCCTAATTTGGTGAGGAAGGAAACTCTGTTGGAACCTTCGGATTTGATGTATTTTCAAAACCACTCATCACAAATGGCTGCACTGGATTACCTTGTGTCTCTAGAGAGTGATATATTCATTCCAACATATGATGGCAACATGGCTAAAGTTGTGGAAGGCCATCGAAGATTTTTAGGCTTCAAAAGGACTATATTGCTTGATAGAAAGCATTTGGTGCACCTCATAGACCTATACACCAAAGGGTCATTAAGCTGGGATGAGTTTTCCATTATGGTGAAGAAATCTCATGCCAATAGGATGGGAAACCCCAAGAGAAGAGTTATCATCCCAGGCAGACCCAAAGAAGAAGACTATTTTTATGCGAATCCTCAAGAGTGTTTGCAATTTCAAGATGACCCATTCAGCAACACATGA >Glyma19g04820.3 sequence type=CDS gene model=Glyma19g04820 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGATGTTGAGGTGGGCAAAGATGTCTGATGGAAAAGGTGATCACTGTGACAGTGAGGAGATGGAGATGGGGTTCAATGTTTTGGGTGGTGGTGATGAAATTGTCAAGTCCAAGAGGTTGATTGTGAGACCTGGGATCAAGGTGTGGATGGCCCGTGCCATCACTACAGTGATACTTTGGACTTGTGTGGTTCAGCTGATGGCAATTGGGGAGTTGAGGGGACCAAGGTTGTTGAAGGGCATGCCTTATTGTTTCAGCCACCAAGATGCATCTCAACCTATGTCAAACGCTTATGTTCCTGCAAGAGTTGTGCTCCCACCAAAAAGGATTCATAAGAATAATGGTTATCTTGTAGTTTCATGCAATGGAGGACTCAACCAAATGCGAGCAGCAATATGTGACATGGTTGCTATTGCAAGACATTTAAATGTTACTCTCATAGTTCCAGAGCTGGATAAAACTTCTTTCTGGGCTGATCCAAGTGAGTTCCAAGACATATTTGATGTAGATAATTTCATTGGATCCTTAAGAGATGAAGTTAGAATATTAAAGCAACTACCACCTAGGCCCAAGAGAAGAGTTGAACGAGGATTATTCTACTCATTGCCTCCAGTTAGCTGGTCCAATATTTCTTACTATGAAAAGCAGATCCTGCCTCTGTTACTGAAACACAAGGTTGTGCACCTGAATAGAACAGATGCTCGACTTGCGAATAATGGGCTGCCTCTGGAGATTCAAAAGCTGCGATGCCGAGTGAATTTTAATGCTCTGAGGTTTACTTCCCAGATAGAGCAACTTGGTAGGAGGATAATCAGAATTTTGAGGGAAAAGGGACCCTTCCTTGTACTTCATCTTAGATATGAGATGGACATGTTGGCCTTCTCTGGCTGTACTCATGGATGTGACGGCAGGGAGGTGGAGGAACTCACAAGAATGAGGTATGCTTATCCCTGGTGGAAGGAAAAAGTCATTAATTCTGAGCTTAAGAGACAAGATGGCTTATGCCCTTTGACACCTGAGGAAACTACACTAATATTGACAGCTCTAGGCATAGATCAAAATATCCAAATTTATATTGCTGCTGGAGAAATATATGGCGGACAGAGAAGGATGGCAAGTTTGCAAGCAGCTTTTCCTAATTTGGTGAGGAAGGAAACTCTGTTGGAACCTTCGGATTTGATGTATTTTCAAAACCACTCATCACAAATGGCTGCACTGGATTACCTTGTGTCTCTAGAGAGTGATATATTCATTCCAACATATGATGGCAACATGGCTAAAGTTGTGGAAGGCCATCGAAGATTTTTAGGCTTCAAAAGGACTATATTGCTTGATAGAAAGCATTTGGTGCACCTCATAGACCTATACACCAAAGGGTCATTAAGCTGGGATGAGTTTTCCATTATGGTGAAGAAATCTCATGCCAATAGGATGGGAAACCCCAAGAGAAGAGTTATCATCCCAGGCAGACCCAAAGAAGAAGACTATTTTTATGCGAATCCTCAAGAGTGTTTGCAATTTCAAGATGACCCATTCAGCAACACATGA
>Glyma19g04820.2 sequence type=predicted peptide gene model=Glyma19g04820 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MMLRWAKMSDGKGDHCDSEEMEMGFNVLGGGDEIVKSKRLIVRPGIKVWMARAITTVILWTCVVQLMAIGELRGPRLLKGMPYCFSHQDASQPMSNAYVPARVVLPPKRIHKNNGYLVVSCNGGLNQMRAAICDMVAIARHLNVTLIVPELDKTSFWADPSEFQDIFDVDNFIGSLRDEVRILKQLPPRPKRRVERGLFYSLPPVSWSNISYYEKQILPLLLKHKVVHLNRTDARLANNGLPLEIQKLRCRVNFNALRFTSQIEQLGRRIIRILREKGPFLVLHLRYEMDMLAFSGCTHGCDGREVEELTRMRYAYPWWKEKVINSELKRQDGLCPLTPEETTLILTALGIDQNIQIYIAAGEIYGGQRRMASLQAAFPNLVRKETLLEPSDLMYFQNHSSQMAALDYLVSLESDIFIPTYDGNMAKVVEGHRRFLGFKRTILLDRKHLVHLIDLYTKGSLSWDEFSIMVKKSHANRMGNPKRRVIIPGRPKEEDYFYANPQECLQFQDDPFSNT* >Glyma19g04820.3 sequence type=predicted peptide gene model=Glyma19g04820 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MMLRWAKMSDGKGDHCDSEEMEMGFNVLGGGDEIVKSKRLIVRPGIKVWMARAITTVILWTCVVQLMAIGELRGPRLLKGMPYCFSHQDASQPMSNAYVPARVVLPPKRIHKNNGYLVVSCNGGLNQMRAAICDMVAIARHLNVTLIVPELDKTSFWADPSEFQDIFDVDNFIGSLRDEVRILKQLPPRPKRRVERGLFYSLPPVSWSNISYYEKQILPLLLKHKVVHLNRTDARLANNGLPLEIQKLRCRVNFNALRFTSQIEQLGRRIIRILREKGPFLVLHLRYEMDMLAFSGCTHGCDGREVEELTRMRYAYPWWKEKVINSELKRQDGLCPLTPEETTLILTALGIDQNIQIYIAAGEIYGGQRRMASLQAAFPNLVRKETLLEPSDLMYFQNHSSQMAALDYLVSLESDIFIPTYDGNMAKVVEGHRRFLGFKRTILLDRKHLVHLIDLYTKGSLSWDEFSIMVKKSHANRMGNPKRRVIIPGRPKEEDYFYANPQECLQFQDDPFSNT*
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