SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G50840 | AT | Annotation by Michelle Graham. TAIR10: polymerase gamma 2 | chr1:18839277-18844313 FORWARD LENGTH=1050 | SoyBase | E_val: 0 | ISS |
| GO:0006139 | GO-bp | Annotation by Michelle Graham. GO Biological Process: nucleobase-containing compound metabolic process | SoyBase | N/A | ISS |
| GO:0006260 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA replication | SoyBase | N/A | ISS |
| GO:0006264 | GO-bp | Annotation by Michelle Graham. GO Biological Process: mitochondrial DNA replication | SoyBase | N/A | ISS |
| GO:0033259 | GO-bp | Annotation by Michelle Graham. GO Biological Process: plastid DNA replication | SoyBase | N/A | ISS |
| GO:0005622 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: intracellular | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0003676 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding | SoyBase | N/A | ISS |
| GO:0003677 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: DNA binding | SoyBase | N/A | ISS |
| GO:0003887 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: DNA-directed DNA polymerase activity | SoyBase | N/A | ISS |
| GO:0008408 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: 3'-5' exonuclease activity | SoyBase | N/A | ISS |
| PTHR10133 | Panther | DNA POLYMERASE I | JGI | ISS | |
| PF00476 | PFAM | DNA polymerase family A | JGI | ISS | |
| PF01612 | PFAM | 3'-5' exonuclease | JGI | ISS | |
| UniRef100_G7K3G7 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: DNA polymerase n=1 Tax=Medicago truncatula RepID=G7K3G7_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233E1BE | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233E1BE related cluster n=1 Tax=unknown RepID=UPI000233E1BE | SoyBase | E_val: 0 | ISS |
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Glyma19g04810 not represented in the dataset |
Glyma19g04810 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.19g036300 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma19g04810.2 sequence type=CDS gene model=Glyma19g04810 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAATCTTCAGATGAAGAGGAGAGCACTCAGCAATGCACTTTTGGAAAACTACCTTTAAGAAAAGTACCTTGTAAACTTGATGGTGGAGGCAAAGAGATTTTAGAAAAATTTGCTGAATTTTTTAGCGATTCTTCCATCAAGAAGGTCTGGCATAATTATAGCTTTGACTGTCATGTTATAGAGAATTATGGATTCAAAGTTTCGGGATTTCATGCTGATACAATGCACATGGCACGATTATGGGATTCTTCAAGACATTTGGATGGGGGTTATTCTCTTGAAGGACTTACAGGTGACAGAAGGGTCATGTCTAGGGCTCAGCTGAACCATGAAAAGGACTTGATTGGTAAGGTGTCAATGAAAACTATATTTAGTAAGAAAAAATTGAAAAAGGATGGATCTGAGGGTAAAACAAGTATCATTGCTCCTGTTGAAGAACTACAGAGAGATGAGCGTATACCTTGGATATGTTATTCTGCCTTAGATGCTAGCAGCACTTTGAAGCTGTATGAGAGCCTAAAGAGCCATCTTTCAGACATGCCCTGGAAATTTGATGGTGTGCCAGTTTATGGGAAAACCATGTATGATTTCTACAATGAATATTGGCGTCCATTTGGTGAGCTTCTAGTCATGATGGAATCTGAGGGAATGCTAGTTGACCGGGCTTATCTTGAAAGCATAGAAAAGGTGGCCAAAGAAGAGCAAGAGGTAGCTGTTAATAGATTCCGTAAATGGGCCACTAGGTATTGTCCTGATGCCCAGTATATGAATGTGGGAAGTGATTCGCAGTTGCGCCAGCTGCTTTTTGGTGGCATTGTGAACAGAAAGGACTCCAATCAAACGCTTCCAACTGAACGAATATTCAAAATTCCCAATGTTAATAATGTGATTGAAGAAGGCAAGAAGGCTCCAAAAAGATTTTGTGATATAAAGTTGACGAGCTTAGGTTATAATCTGGAGACTGAGATGTACACAGCAACTGGTTGGCCGTCAGTTAGTGGTCATGCTTTAAAGGCCCTGGCTGGAAGTATTTCCGCTGATTATGACTTTTTTGATGAGGATTGTAACTTGGATCTCGATGATGAAGATGAAAATCCTTCTCAAAGTGAAGTTGCACCGGTAAAAATTGATAAATCTGCATATGGGACAGCCTATGCAGCTTTTCCAACAGAGGAAGAAGGGAGAGAAGCTTGCCATGCAATTGCTGCTTTATGTCAAGTCTGTTCAATCAACTCTTTGATCTCCAACTTCATCCTTCCCCTGCAGGGACATAATATATCAGGAAAAGATCTCCGTGTTCATTGTTCCTTAAATATCAACACAGAGACAGGACGCTTGTCAGCAAGAAGGCCAAATCTGCAGAATCAACCTGCTCTAGAAAAGGATCGATACAAAATCCGTCAAGCATTCATTGCTGCACCCAAGAATTCTCTTATAGTTGCTGATTATGGACAGCTGGAACTTAGGATTCTGGCACACCTTGCAGACTGTAAGAGCATGTTGGAAGCTTTTGAAGCTGGTGGAGATTTCCATTCAAGGACTGCAATGAATATGTACCCACATATTCGTGAAGCACTTGAAAAAAAGGAAGTGCTTCTTGAGTGGCATCCTCAGCCTGGTGAAGATAAACCCCCAGTTCCTCTTTTGAAGGATGCCTTTGCTTCTGAAAGAAGAAAAGCTAAAATGCTTAACTTCTCAATTGCATATGAGAAGACTCCTGTGGGGCACGGGAAGATTTACTTGAAAGCTGCCAAGAATTACTTGGAAAAAAAAACAAATGAAACTTATGCTGAATTCTTATGTCTTCTGCAGGTGCTATTTAATTTCCAAATGATGCATTTGTGA
>Glyma19g04810.2 sequence type=predicted peptide gene model=Glyma19g04810 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MESSDEEESTQQCTFGKLPLRKVPCKLDGGGKEILEKFAEFFSDSSIKKVWHNYSFDCHVIENYGFKVSGFHADTMHMARLWDSSRHLDGGYSLEGLTGDRRVMSRAQLNHEKDLIGKVSMKTIFSKKKLKKDGSEGKTSIIAPVEELQRDERIPWICYSALDASSTLKLYESLKSHLSDMPWKFDGVPVYGKTMYDFYNEYWRPFGELLVMMESEGMLVDRAYLESIEKVAKEEQEVAVNRFRKWATRYCPDAQYMNVGSDSQLRQLLFGGIVNRKDSNQTLPTERIFKIPNVNNVIEEGKKAPKRFCDIKLTSLGYNLETEMYTATGWPSVSGHALKALAGSISADYDFFDEDCNLDLDDEDENPSQSEVAPVKIDKSAYGTAYAAFPTEEEGREACHAIAALCQVCSINSLISNFILPLQGHNISGKDLRVHCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAAPKNSLIVADYGQLELRILAHLADCKSMLEAFEAGGDFHSRTAMNMYPHIREALEKKEVLLEWHPQPGEDKPPVPLLKDAFASERRKAKMLNFSIAYEKTPVGHGKIYLKAAKNYLEKKTNETYAEFLCLLQVLFNFQMMHL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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