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Report for Sequence Feature Glyma19g04810

Feature Type:gene_model
Chromosome:Gm19
Start:5022901
stop:5027669
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G50840AT Annotation by Michelle Graham. TAIR10: polymerase gamma 2 | chr1:18839277-18844313 FORWARD LENGTH=1050 SoyBaseE_val: 0ISS
GO:0006139GO-bp Annotation by Michelle Graham. GO Biological Process: nucleobase-containing compound metabolic process SoyBaseN/AISS
GO:0006260GO-bp Annotation by Michelle Graham. GO Biological Process: DNA replication SoyBaseN/AISS
GO:0006264GO-bp Annotation by Michelle Graham. GO Biological Process: mitochondrial DNA replication SoyBaseN/AISS
GO:0033259GO-bp Annotation by Michelle Graham. GO Biological Process: plastid DNA replication SoyBaseN/AISS
GO:0005622GO-cc Annotation by Michelle Graham. GO Cellular Compartment: intracellular SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005739GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0003676GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding SoyBaseN/AISS
GO:0003677GO-mf Annotation by Michelle Graham. GO Molecular Function: DNA binding SoyBaseN/AISS
GO:0003887GO-mf Annotation by Michelle Graham. GO Molecular Function: DNA-directed DNA polymerase activity SoyBaseN/AISS
GO:0008408GO-mf Annotation by Michelle Graham. GO Molecular Function: 3'-5' exonuclease activity SoyBaseN/AISS
PTHR10133Panther DNA POLYMERASE I JGI ISS
PF00476PFAM DNA polymerase family A JGI ISS
PF01612PFAM 3'-5' exonuclease JGI ISS
UniRef100_G7K3G7UniRef Annotation by Michelle Graham. Most informative UniRef hit: DNA polymerase n=1 Tax=Medicago truncatula RepID=G7K3G7_MEDTR SoyBaseE_val: 0ISS
UniRef100_UPI000233E1BEUniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233E1BE related cluster n=1 Tax=unknown RepID=UPI000233E1BE SoyBaseE_val: 0ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma19g04810 not represented in the dataset

Glyma19g04810 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Corresponding NameAnnotation VersionEvidenceComments
Glyma.19g036300 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma19g04810.2   sequence type=CDS   gene model=Glyma19g04810   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAATCTTCAGATGAAGAGGAGAGCACTCAGCAATGCACTTTTGGAAAACTACCTTTAAGAAAAGTACCTTGTAAACTTGATGGTGGAGGCAAAGAGATTTTAGAAAAATTTGCTGAATTTTTTAGCGATTCTTCCATCAAGAAGGTCTGGCATAATTATAGCTTTGACTGTCATGTTATAGAGAATTATGGATTCAAAGTTTCGGGATTTCATGCTGATACAATGCACATGGCACGATTATGGGATTCTTCAAGACATTTGGATGGGGGTTATTCTCTTGAAGGACTTACAGGTGACAGAAGGGTCATGTCTAGGGCTCAGCTGAACCATGAAAAGGACTTGATTGGTAAGGTGTCAATGAAAACTATATTTAGTAAGAAAAAATTGAAAAAGGATGGATCTGAGGGTAAAACAAGTATCATTGCTCCTGTTGAAGAACTACAGAGAGATGAGCGTATACCTTGGATATGTTATTCTGCCTTAGATGCTAGCAGCACTTTGAAGCTGTATGAGAGCCTAAAGAGCCATCTTTCAGACATGCCCTGGAAATTTGATGGTGTGCCAGTTTATGGGAAAACCATGTATGATTTCTACAATGAATATTGGCGTCCATTTGGTGAGCTTCTAGTCATGATGGAATCTGAGGGAATGCTAGTTGACCGGGCTTATCTTGAAAGCATAGAAAAGGTGGCCAAAGAAGAGCAAGAGGTAGCTGTTAATAGATTCCGTAAATGGGCCACTAGGTATTGTCCTGATGCCCAGTATATGAATGTGGGAAGTGATTCGCAGTTGCGCCAGCTGCTTTTTGGTGGCATTGTGAACAGAAAGGACTCCAATCAAACGCTTCCAACTGAACGAATATTCAAAATTCCCAATGTTAATAATGTGATTGAAGAAGGCAAGAAGGCTCCAAAAAGATTTTGTGATATAAAGTTGACGAGCTTAGGTTATAATCTGGAGACTGAGATGTACACAGCAACTGGTTGGCCGTCAGTTAGTGGTCATGCTTTAAAGGCCCTGGCTGGAAGTATTTCCGCTGATTATGACTTTTTTGATGAGGATTGTAACTTGGATCTCGATGATGAAGATGAAAATCCTTCTCAAAGTGAAGTTGCACCGGTAAAAATTGATAAATCTGCATATGGGACAGCCTATGCAGCTTTTCCAACAGAGGAAGAAGGGAGAGAAGCTTGCCATGCAATTGCTGCTTTATGTCAAGTCTGTTCAATCAACTCTTTGATCTCCAACTTCATCCTTCCCCTGCAGGGACATAATATATCAGGAAAAGATCTCCGTGTTCATTGTTCCTTAAATATCAACACAGAGACAGGACGCTTGTCAGCAAGAAGGCCAAATCTGCAGAATCAACCTGCTCTAGAAAAGGATCGATACAAAATCCGTCAAGCATTCATTGCTGCACCCAAGAATTCTCTTATAGTTGCTGATTATGGACAGCTGGAACTTAGGATTCTGGCACACCTTGCAGACTGTAAGAGCATGTTGGAAGCTTTTGAAGCTGGTGGAGATTTCCATTCAAGGACTGCAATGAATATGTACCCACATATTCGTGAAGCACTTGAAAAAAAGGAAGTGCTTCTTGAGTGGCATCCTCAGCCTGGTGAAGATAAACCCCCAGTTCCTCTTTTGAAGGATGCCTTTGCTTCTGAAAGAAGAAAAGCTAAAATGCTTAACTTCTCAATTGCATATGAGAAGACTCCTGTGGGGCACGGGAAGATTTACTTGAAAGCTGCCAAGAATTACTTGGAAAAAAAAACAAATGAAACTTATGCTGAATTCTTATGTCTTCTGCAGGTGCTATTTAATTTCCAAATGATGCATTTGTGA

>Glyma19g04810.2   sequence type=predicted peptide   gene model=Glyma19g04810   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MESSDEEESTQQCTFGKLPLRKVPCKLDGGGKEILEKFAEFFSDSSIKKVWHNYSFDCHVIENYGFKVSGFHADTMHMARLWDSSRHLDGGYSLEGLTGDRRVMSRAQLNHEKDLIGKVSMKTIFSKKKLKKDGSEGKTSIIAPVEELQRDERIPWICYSALDASSTLKLYESLKSHLSDMPWKFDGVPVYGKTMYDFYNEYWRPFGELLVMMESEGMLVDRAYLESIEKVAKEEQEVAVNRFRKWATRYCPDAQYMNVGSDSQLRQLLFGGIVNRKDSNQTLPTERIFKIPNVNNVIEEGKKAPKRFCDIKLTSLGYNLETEMYTATGWPSVSGHALKALAGSISADYDFFDEDCNLDLDDEDENPSQSEVAPVKIDKSAYGTAYAAFPTEEEGREACHAIAALCQVCSINSLISNFILPLQGHNISGKDLRVHCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAAPKNSLIVADYGQLELRILAHLADCKSMLEAFEAGGDFHSRTAMNMYPHIREALEKKEVLLEWHPQPGEDKPPVPLLKDAFASERRKAKMLNFSIAYEKTPVGHGKIYLKAAKNYLEKKTNETYAEFLCLLQVLFNFQMMHL*







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