SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G57600 | AT | Annotation by Michelle Graham. TAIR10: Integrase-type DNA-binding superfamily protein | chr3:21332841-21333674 FORWARD LENGTH=277 | SoyBase | E_val: 3.00E-70 | ISS |
| GO:0006355 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0010093 | GO-bp | Annotation by Michelle Graham. GO Biological Process: specification of floral organ identity | SoyBase | N/A | ISS |
| GO:0048440 | GO-bp | Annotation by Michelle Graham. GO Biological Process: carpel development | SoyBase | N/A | ISS |
| GO:0048507 | GO-bp | Annotation by Michelle Graham. GO Biological Process: meristem development | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003677 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: DNA binding | SoyBase | N/A | ISS |
| GO:0003700 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity | SoyBase | N/A | ISS |
| PF00847 | PFAM | AP2 domain | JGI | ISS | |
| UniRef100_G7KTK9 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Dehydration-responsive element-binding protein 2F n=1 Tax=Medicago truncatula RepID=G7KTK9_MEDTR | SoyBase | E_val: 8.00E-135 | ISS |
| UniRef100_I1N929 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N929_SOYBN | SoyBase | E_val: 5.00E-180 | ISS |
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Glyma19g04461 not represented in the dataset |
Glyma19g04461 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.19g035500 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma19g04461.1 sequence type=CDS gene model=Glyma19g04461 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAATACTTGCAAGAAGTCCCCTTTGAAGCCATGGAAGAAAGGGCCAACAAGGGGGAAAGGCGGGCCCCAGAACGCCTCCTGCGAGTACCGAGGCGTTCGGCACCGAACTTGGGGCAAATGGGTTGCTGAGATAAGAGAGCCAAAGAAGAGAACCAGGCTCTGGCTTGGTTCTTTTGCCACAGCTAAAGAAGCTGCCATGGCTTATGATGAGGCTGCAAGGAGACTCTATGGTCCAGATGCATACCTTAATCTCCCCCACCTGCAACCCAGGTCCACTTCAACTATCACGTTAGGAAAGTTAAAATGGTTCCCTTCCAAGAACTTCATTTCAATGTTTCCTTCCTGTGGATTACTCAATGTAAATGCTCAACCTAGTCGAAATTCAGTTGTGAGTCAATCCTCATCTAGTTCATCCAATGATCCAATGGCAGAAATTCAGAATGTAGATAGCAAAAATCACGGAGAAGATGAAAATCCTCCAAAAGATGTTCAAACATCATCAGAGGAGGTGCTTGGAGATCTTCAGGAGAAACCCCAGATAGACCTCCATGAGTTTCTTCAACAGATGGGAATACTTAAAGAAGAAAGACAGTTAGAAAGAACTGATAGCTCAGGAAGTTCAACAGTGCGTGAAGCTGTGTTGACAAATGACTGTGATCATTTGGGTGGGTTTTCTGACAAGAGTGTAAATAGGGAGGCATTGATTGAGATGCATGGACTTGCAGGTATTCAGGAATCAGAAGTCACTCAGCTTGAAGCATATGAGCCAAATGATGATCTAACTTTCTCAACTTCCAGTTGGAACTTTTAA
>Glyma19g04461.1 sequence type=predicted peptide gene model=Glyma19g04461 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MNTCKKSPLKPWKKGPTRGKGGPQNASCEYRGVRHRTWGKWVAEIREPKKRTRLWLGSFATAKEAAMAYDEAARRLYGPDAYLNLPHLQPRSTSTITLGKLKWFPSKNFISMFPSCGLLNVNAQPSRNSVVSQSSSSSSNDPMAEIQNVDSKNHGEDENPPKDVQTSSEEVLGDLQEKPQIDLHEFLQQMGILKEERQLERTDSSGSSTVREAVLTNDCDHLGGFSDKSVNREALIEMHGLAGIQESEVTQLEAYEPNDDLTFSTSSWNF*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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