SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G16240 | AT | Annotation by Michelle Graham. TAIR10: delta tonoplast integral protein | chr3:5505534-5506788 FORWARD LENGTH=250 | SoyBase | E_val: 7.00E-128 | ISS |
| GO:0006810 | GO-bp | Annotation by Michelle Graham. GO Biological Process: transport | SoyBase | N/A | ISS |
| GO:0006816 | GO-bp | Annotation by Michelle Graham. GO Biological Process: calcium ion transport | SoyBase | N/A | ISS |
| GO:0006833 | GO-bp | Annotation by Michelle Graham. GO Biological Process: water transport | SoyBase | N/A | ISS |
| GO:0007030 | GO-bp | Annotation by Michelle Graham. GO Biological Process: Golgi organization | SoyBase | N/A | ISS |
| GO:0009651 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to salt stress | SoyBase | N/A | ISS |
| GO:0015840 | GO-bp | Annotation by Michelle Graham. GO Biological Process: urea transport | SoyBase | N/A | ISS |
| GO:0030003 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cellular cation homeostasis | SoyBase | N/A | ISS |
| GO:0055085 | GO-bp | Annotation by Michelle Graham. GO Biological Process: transmembrane transport | SoyBase | N/A | ISS |
| GO:0070838 | GO-bp | Annotation by Michelle Graham. GO Biological Process: divalent metal ion transport | SoyBase | N/A | ISS |
| GO:0000326 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: protein storage vacuole | SoyBase | N/A | ISS |
| GO:0005618 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cell wall | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0005773 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: vacuole | SoyBase | N/A | ISS |
| GO:0005774 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane | SoyBase | N/A | ISS |
| GO:0005794 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0009505 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plant-type cell wall | SoyBase | N/A | ISS |
| GO:0009506 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0009705 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plant-type vacuole membrane | SoyBase | N/A | ISS |
| GO:0009941 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope | SoyBase | N/A | ISS |
| GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
| GO:0016021 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane | SoyBase | N/A | ISS |
| GO:0042807 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: central vacuole | SoyBase | N/A | ISS |
| GO:0005215 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transporter activity | SoyBase | N/A | ISS |
| GO:0015200 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: methylammonium transmembrane transporter activity | SoyBase | N/A | ISS |
| GO:0015204 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: urea transmembrane transporter activity | SoyBase | N/A | ISS |
| GO:0015250 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: water channel activity | SoyBase | N/A | ISS |
| KOG0223 | KOG | Aquaporin (major intrinsic protein family) | JGI | ISS | |
| PTHR19139 | Panther | AQUAPORIN TRANSPORTER | JGI | ISS | |
| PTHR19139:SF30 | Panther | AQUAPORIN-7 | JGI | ISS | |
| PF00230 | PFAM | Major intrinsic protein | JGI | ISS | |
| UniRef100_G7IUM9 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Aquaporin n=1 Tax=Medicago truncatula RepID=G7IUM9_MEDTR | SoyBase | E_val: 1.00E-134 | ISS |
| UniRef100_I1N6F6 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N6F6_SOYBN | SoyBase | E_val: 4.00E-160 | ISS |
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Glyma19g04450 not represented in the dataset |
Glyma19g04450 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.19g035400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma19g04450.1 sequence type=CDS gene model=Glyma19g04450 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTGGCATAGCATTCGGAAACTTCAATGATTCTGTTAGTTTTGCCTCCATCAAGGCCTACATTGCTGAGTTCATCTCAACCCTTCTCTTTGTTTTTGCCGGTGTTGGTTCAGCCATAGCCTATGCTAAGTTGACATCAGATGCAGCTCTTGATCCAACTGGGTTGGTAGCAGTTGCTATTTGCCATGGTTTTGCTCTCTTCGTTGCTGTTTCTGTTGGAGCCAACATTTCTGGTGGCCATGTGAACCCTGCTGTGACCTTTGGGTTGGCTCTTGGGGGCCACATCACCATCCTCACTGGTCTCTTCTACTGGATTGCACAGCTTCTCGGCTCCATAGTGGCATCCTTACTCCTCAAGTTTGTCACTGGCTATGATACTCCTATCCACAGTGTTGCTGCGGGAATTGGAGCTGGTGAAGGAGTAGTTACAGAGATCATAATCACATTTGGATTAGTGTACACAGTGTATGCCACAACAGCAGACCCTAAGAAGGGTTCGTTGGGCACAATTGCACCCATTGCCATTGGTTTCATTGTTGGCGCCAACATCTTAGCAGCAGGGCCATTCTCTGGCGGGTCCATGAACCCTGCACGCTCCTTTGGCCCTGCTGTTGTTAGTGGTGACTTTCATGACAACTGGATTTATTGGGTTGGCACTCTTATTGGTGGTGGTTTGGCTGGTCTTATCTATACCTATGCCTTCATAATGTGA
>Glyma19g04450.1 sequence type=predicted peptide gene model=Glyma19g04450 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAGIAFGNFNDSVSFASIKAYIAEFISTLLFVFAGVGSAIAYAKLTSDAALDPTGLVAVAICHGFALFVAVSVGANISGGHVNPAVTFGLALGGHITILTGLFYWIAQLLGSIVASLLLKFVTGYDTPIHSVAAGIGAGEGVVTEIIITFGLVYTVYATTADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVVSGDFHDNWIYWVGTLIGGGLAGLIYTYAFIM*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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