|
A newer version of this gene model can be found here:
Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
---|---|---|---|---|---|
AT1G15520 | AT | Annotation by Michelle Graham. TAIR10: pleiotropic drug resistance 12 | chr1:5331993-5338175 REVERSE LENGTH=1423 | SoyBase | E_val: 3.00E-77 | ISS |
GO:0000165 | GO-bp | Annotation by Michelle Graham. GO Biological Process: MAPK cascade | SoyBase | N/A | ISS |
GO:0006612 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein targeting to membrane | SoyBase | N/A | ISS |
GO:0006855 | GO-bp | Annotation by Michelle Graham. GO Biological Process: drug transmembrane transport | SoyBase | N/A | ISS |
GO:0007165 | GO-bp | Annotation by Michelle Graham. GO Biological Process: signal transduction | SoyBase | N/A | ISS |
GO:0009414 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to water deprivation | SoyBase | N/A | ISS |
GO:0009595 | GO-bp | Annotation by Michelle Graham. GO Biological Process: detection of biotic stimulus | SoyBase | N/A | ISS |
GO:0009697 | GO-bp | Annotation by Michelle Graham. GO Biological Process: salicylic acid biosynthetic process | SoyBase | N/A | ISS |
GO:0009723 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to ethylene stimulus | SoyBase | N/A | ISS |
GO:0009733 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to auxin stimulus | SoyBase | N/A | ISS |
GO:0009737 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus | SoyBase | N/A | ISS |
GO:0009738 | GO-bp | Annotation by Michelle Graham. GO Biological Process: abscisic acid mediated signaling pathway | SoyBase | N/A | ISS |
GO:0009751 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to salicylic acid stimulus | SoyBase | N/A | ISS |
GO:0009753 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to jasmonic acid stimulus | SoyBase | N/A | ISS |
GO:0009862 | GO-bp | Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance, salicylic acid mediated signaling pathway | SoyBase | N/A | ISS |
GO:0009867 | GO-bp | Annotation by Michelle Graham. GO Biological Process: jasmonic acid mediated signaling pathway | SoyBase | N/A | ISS |
GO:0010193 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to ozone | SoyBase | N/A | ISS |
GO:0010200 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to chitin | SoyBase | N/A | ISS |
GO:0010310 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of hydrogen peroxide metabolic process | SoyBase | N/A | ISS |
GO:0010363 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of plant-type hypersensitive response | SoyBase | N/A | ISS |
GO:0015692 | GO-bp | Annotation by Michelle Graham. GO Biological Process: lead ion transport | SoyBase | N/A | ISS |
GO:0031348 | GO-bp | Annotation by Michelle Graham. GO Biological Process: negative regulation of defense response | SoyBase | N/A | ISS |
GO:0042538 | GO-bp | Annotation by Michelle Graham. GO Biological Process: hyperosmotic salinity response | SoyBase | N/A | ISS |
GO:0042742 | GO-bp | Annotation by Michelle Graham. GO Biological Process: defense response to bacterium | SoyBase | N/A | ISS |
GO:0043069 | GO-bp | Annotation by Michelle Graham. GO Biological Process: negative regulation of programmed cell death | SoyBase | N/A | ISS |
GO:0043900 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of multi-organism process | SoyBase | N/A | ISS |
GO:0046865 | GO-bp | Annotation by Michelle Graham. GO Biological Process: terpenoid transport | SoyBase | N/A | ISS |
GO:0050832 | GO-bp | Annotation by Michelle Graham. GO Biological Process: defense response to fungus | SoyBase | N/A | ISS |
GO:0080168 | GO-bp | Annotation by Michelle Graham. GO Biological Process: abscisic acid transport | SoyBase | N/A | ISS |
GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
GO:0000166 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleotide binding | SoyBase | N/A | ISS |
GO:0005524 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP binding | SoyBase | N/A | ISS |
GO:0016887 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATPase activity | SoyBase | N/A | ISS |
GO:0017111 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleoside-triphosphatase activity | SoyBase | N/A | ISS |
GO:0042626 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATPase activity, coupled to transmembrane movement of substances | SoyBase | N/A | ISS |
PTHR19241 | Panther | ATP-BINDING CASSETTE TRANSPORTER | JGI | ISS | |
PTHR19241:SF95 | Panther | JGI | ISS | ||
PF00005 | PFAM | ABC transporter | JGI | ISS | |
UniRef100_G7KXE7 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Pleiotropic drug resistance ABC transporter family protein n=1 Tax=Medicago truncatula RepID=G7KXE7_MEDTR | SoyBase | E_val: 6.00E-84 | ISS |
UniRef100_I1JP88 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JP88_SOYBN | SoyBase | E_val: 7.00E-87 | ISS |
Glyma19g04390 not represented in the dataset |
Glyma19g04390 not represented in the dataset |
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Corresponding Name | Annotation Version | Evidence | Comments |
---|
Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma19g04390.1 sequence type=CDS gene model=Glyma19g04390 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGACAAAGTGGAATTTCAATTATGGCAGAGGAACCTCAAGTGCAATTAAGTCATTCTTTTTCAAAGGAACATAAGAGTTTTGGGCCAGTTACTGGTTGTCCAAGACAACCATGGCATGATTTGCATTCCCAAGTTGATGGTCCAGCAACATATGACATTCTCACCAATTTTGAGGAGCGTTGGTTAAGGGCATTAAAAATGCATAGATATCAAAAGATGAGAAGTTCACATGATGATTCATTACTGAAAATTGATAGAATCCCTGACATTGTTGGCATTGATGAAGTTCCTTGCCAGAATGAAAATAACCGGGAGACTTGGCATGTCCAGGAAAATGCTAATTCCGTTTACTTCATTGAACAGAACTTGGTTTGTGGAAAGAATGTACTGATAGACATGAGCATACATTCAGCGTATGTCAAAGCAAATCGAGCAGCCCAAAAGTTTATCTATATTGAGAACCAATACTTTCTTGGCTCAATGACATTGCTTTTGGGCCCTCCATGTTCCGGAAAAACCACCCTCTTGTTGGTCTTGGGTGCAAAACTTGATCCAAAATTAAAGTTTTCTGGAAAGGTGACTTATAATGGTCGTGGGATGGATGAGTTTGTACCCCAAAAAACTGCTGCTTATGCCAATCAAAATGATCTTCATGTTGCAGAGTTGACAGTCAGAGAAACCTTGGCCTTCTCAGCAAGAGTCCAAGGAGTTGGAACTCGTTATGATTTGCTTGCAGAATTGTCCAGAAGAGAAAAAGAGACAAATATCAAGCCTAATCAAGATATTGATGTCTACATGAAGAAGGAAAATTTGATGACAGATTATGTCTTAAGGATTTTAGGACTGGAGGTCTGTGCTGATACTATTGTACGAAATGCAATGTTAAGGGGGATATCTGGTGGACAAAGGAAACGTGTTACAACAGGGGAGATGCTGGTTGGACCAACTAATGCTTTATTCATGGATGAAATATCTATTGCTCAACAACTTACTGTTCCCTCTTGCATTTTAATGATATGCTTGTGTGATGCTACTAAAAAATTTTCAGGGGTCAGAAAGACTTTGAATTCAGAGTTATGGCATGCTTTTGCAGGGCTTCTTGTGTCATTACCCCAAGTTGGGAGTCTTGTGTTTTACTTCCCTCAGGGACATAGTGAGCAGGTGAATGAATCTGTTGTTCTCTTTTCA
>Glyma19g04390.1 sequence type=predicted peptide gene model=Glyma19g04390 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGQSGISIMAEEPQVQLSHSFSKEHKSFGPVTGCPRQPWHDLHSQVDGPATYDILTNFEERWLRALKMHRYQKMRSSHDDSLLKIDRIPDIVGIDEVPCQNENNRETWHVQENANSVYFIEQNLVCGKNVLIDMSIHSAYVKANRAAQKFIYIENQYFLGSMTLLLGPPCSGKTTLLLVLGAKLDPKLKFSGKVTYNGRGMDEFVPQKTAAYANQNDLHVAELTVRETLAFSARVQGVGTRYDLLAELSRREKETNIKPNQDIDVYMKKENLMTDYVLRILGLEVCADTIVRNAMLRGISGGQRKRVTTGEMLVGPTNALFMDEISIAQQLTVPSCILMICLCDATKKFSGVRKTLNSELWHAFAGLLVSLPQVGSLVFYFPQGHSEQVNESVVLFS
Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||