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Report for Sequence Feature Glyma19g04333

Feature Type:gene_model
Chromosome:Gm19
Start:4509553
stop:4517240
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma19g04333
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G60910AT Annotation by Michelle Graham. TAIR10: AGAMOUS-like 8 | chr5:24502736-24504934 REVERSE LENGTH=180 SoyBaseE_val: 2.00E-37ISS
GO:0006355GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0009911GO-bp Annotation by Michelle Graham. GO Biological Process: positive regulation of flower development SoyBaseN/AISS
GO:0010077GO-bp Annotation by Michelle Graham. GO Biological Process: maintenance of inflorescence meristem identity SoyBaseN/AISS
GO:0010154GO-bp Annotation by Michelle Graham. GO Biological Process: fruit development SoyBaseN/AISS
GO:0031540GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of anthocyanin biosynthetic process SoyBaseN/AISS
GO:0048481GO-bp Annotation by Michelle Graham. GO Biological Process: ovule development SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003677GO-mf Annotation by Michelle Graham. GO Molecular Function: DNA binding SoyBaseN/AISS
GO:0003700GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
GO:0046983GO-mf Annotation by Michelle Graham. GO Molecular Function: protein dimerization activity SoyBaseN/AISS
PTHR11945Panther MADS BOX PROTEIN JGI ISS
PTHR11945:SF19Panther MADS BOX PROTEIN JGI ISS
PF01486PFAM K-box region JGI ISS
UniRef100_G7KR16UniRef Annotation by Michelle Graham. Most informative UniRef hit: MADS-box protein n=1 Tax=Medicago truncatula RepID=G7KR16_MEDTR SoyBaseE_val: 3.00E-58ISS
UniRef100_UPI000233B273UniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233B273 related cluster n=1 Tax=unknown RepID=UPI000233B273 SoyBaseE_val: 3.00E-115ISS

Expression Patterns of Glyma19g04333
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma19g04333 not represented in the dataset
Glyma19g04333 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g04333
ParalogEvidenceComments
Glyma13g06811 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g04333 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.19g034600 Wm82.a2.v1IGC As supplied by JGI

References for Glyma19g04333
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma19g04333
>Glyma19g04333.1   sequence type=CDS   gene model=Glyma19g04333   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAAACGTCCTGGAACGATATGAGAGACATACTCATATAGGGAAACTTGTTGGAGATGGTGATGAATCACAGGGAAACTGGTCCTTACAATGCTTCAAGCTCACCGGCAAAGTTGAAGTCTTAGAGAGGAACTTGAGGAACTTTGTGGGAGAAGATCTGGATCCCTTAAACTTGAGAGAGCTTCAGAGTCTAGAGCATCAGCTTGAGACAGCTATAAAGCGCATCCGAACTAGAAAGAACCAAGTTATGAATGAATCCATCTCAGATCTGCAGAAAAAGGCAAGGCAATTGCAAGAGCAAAATGGCATCCTTACAAAGAAGATTAAGGAGAAAGGGAAGGAAGTGGTTGAACGTCCACACTGCGGACCAGAAACCTTAGGTCTAACTTGTCCTCCAGAGCTACAACGACAGCAAAGAGTATTTCCTTCTTTAACACTCTGTGAGACTTTACAAGCAGGGCATCTGGAGGAAGTTGTTGAAGCACGAACGGTTCCTACTGCCAGCACTCACATCCCACCATGGATGCTGCATCCATTTACAAGATAA
Predicted protein sequences of Glyma19g04333
>Glyma19g04333.1   sequence type=predicted peptide   gene model=Glyma19g04333   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MENVLERYERHTHIGKLVGDGDESQGNWSLQCFKLTGKVEVLERNLRNFVGEDLDPLNLRELQSLEHQLETAIKRIRTRKNQVMNESISDLQKKARQLQEQNGILTKKIKEKGKEVVERPHCGPETLGLTCPPELQRQQRVFPSLTLCETLQAGHLEEVVEARTVPTASTHIPPWMLHPFTR*






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