Glyma19g04240 - SoyBase

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Report for Sequence Feature Glyma19g04240

Feature Type:	gene_model
Chromosome:	Gm19
Start:	4320490
stop:	4323964
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g04240

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G15650	AT	Annotation by Michelle Graham. TAIR10: reversibly glycosylated polypeptide 2 \| chr5:5092203-5094093 FORWARD LENGTH=360	SoyBase	E_val: 0	ISS
GO:0009651	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to salt stress	SoyBase	N/A	ISS
GO:0030244	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellulose biosynthetic process	SoyBase	N/A	ISS
GO:0033356	GO-bp	Annotation by Michelle Graham. GO Biological Process: UDP-L-arabinose metabolic process	SoyBase	N/A	ISS
GO:0046686	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cadmium ion	SoyBase	N/A	ISS
GO:0071555	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell wall organization	SoyBase	N/A	ISS
GO:0005618	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cell wall	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0022626	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosolic ribosome	SoyBase	N/A	ISS
GO:0030054	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cell junction	SoyBase	N/A	ISS
GO:0008466	GO-mf	Annotation by Michelle Graham. GO Molecular Function: glycogenin glucosyltransferase activity	SoyBase	N/A	ISS
GO:0016758	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring hexosyl groups	SoyBase	N/A	ISS
GO:0052691	GO-mf	Annotation by Michelle Graham. GO Molecular Function: UDP-arabinopyranose mutase activity	SoyBase	N/A	ISS
PF03214	PFAM	Reversibly glycosylated polypeptide	JGI		ISS
UniRef100_C6TAB7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6TAB7_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q69F96	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Reversibly glycosylated protein n=1 Tax=Phaseolus vulgaris RepID=Q69F96_PHAVU	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma19g04240

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g04240

Paralog	Evidence	Comments
Glyma13g06690	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g04240 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g033800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g04240

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma19g04240

Limit To All Plant Sequences

>Glyma19g04240.1   sequence type=CDS   gene model=Glyma19g04240   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGATGCTTCTGTGGCACCACCACCTCCACTGAAAGATGAGCTTGACATTGTGATTCCAACCATAAGGAACCTTGACTTTCTTGAGATGTGGAGGCCATTCTTTCAGCCTTACCATTTGATCATTGTTCAAGATGGTGACCCCACCAAAACCATCAAGGTTCCTCCTGGCTTTGACTATGAGCTCTACAACCGCAATGACATCAACAAGCTTTTGGGTCCAAGGGCCTCTTGCATCTCCTTCAAGGACTCCGCGTGCCGCTGTTTTGGCTACATGGTGTCCAAGAAGAAGTACATCTACACCATTGATGATGACTGCTTTGTTGCCAATGATCCATCAGGAAAAGCGATCAATGCACTTGAGCAGCATATTAAAAATCTTTTGTGTCCATCCACTCCCTTGTTCTTCAATACCCTTTATGACCCCTTCAGAGAAGGTGCAGATTATGTTCGTGGATACCCTTTCAGTCTTCGTGAAGGTGTGCCAACTGCTATTTCTCATGGACTTTGGCTCAACATCCCAGACTATGATGCTCCTACACAGCTTGTGAAGCCTCTTGAGAGGAACACTAGGTATGTGGATGCTGTTCTGAGCATACCAAAGGGCACTTTATTCCCCATGTGTGGAATGAACTTGGCATTCGATCGTGATCTCATTGGACCAGCCATGTACTTTGGTCTTATGGGAGATGGTCAACCAATCGGACGCTATGATGACATGTGGGCTGGATGGTGCTGCAAGGTGATCACTGATCATTTGGGGCTAGGAGTCAAGACTGGTCTGCCCTATATCTATCACAGCAAGGCCAGTAACCCATTTGTTAACCTCAGGAAAGAGTACAAAGGCATATTCTGGCAGGAAGACATTATTCCATTCTTCCAGAATGTTGTTCTTCCAAAAGAATGCACCACTGTTCAAAAGTGCTACATTGAGCTCTCCAAGCAAGTCAAGGAAAAGCTATCAAAGATAGATCCTTACTTCGACAAGCTCGCCGATGCCATGGTCACTTGGATTGAAGCTTGGGATGAGCTAAACCCTGAAGGAGCATCTAAGGCTAATGACAAAGCATAA

Predicted protein sequences of Glyma19g04240

Limit To All Plant Sequences

>Glyma19g04240.1   sequence type=predicted peptide   gene model=Glyma19g04240   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MADASVAPPPPLKDELDIVIPTIRNLDFLEMWRPFFQPYHLIIVQDGDPTKTIKVPPGFDYELYNRNDINKLLGPRASCISFKDSACRCFGYMVSKKKYIYTIDDDCFVANDPSGKAINALEQHIKNLLCPSTPLFFNTLYDPFREGADYVRGYPFSLREGVPTAISHGLWLNIPDYDAPTQLVKPLERNTRYVDAVLSIPKGTLFPMCGMNLAFDRDLIGPAMYFGLMGDGQPIGRYDDMWAGWCCKVITDHLGLGVKTGLPYIYHSKASNPFVNLRKEYKGIFWQEDIIPFFQNVVLPKECTTVQKCYIELSKQVKEKLSKIDPYFDKLADAMVTWIEAWDELNPEGASKANDKA*

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