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Report for Sequence Feature Glyma19g04230
Feature Type: gene_model
Chromosome: Gm19
Start: 4300457
stop: 4307766
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma19g04230
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT5G15810 AT
Annotation by Michelle Graham. TAIR10: N2,N2-dimethylguanosine tRNA methyltransferase | chr5:5157798-5161121 FORWARD LENGTH=691
SoyBase E_val: 0 ISS
GO:0006406 GO-bp
Annotation by Michelle Graham. GO Biological Process: mRNA export from nucleus
SoyBase N/A ISS
GO:0006606 GO-bp
Annotation by Michelle Graham. GO Biological Process: protein import into nucleus
SoyBase N/A ISS
GO:0008033 GO-bp
Annotation by Michelle Graham. GO Biological Process: tRNA processing
SoyBase N/A ISS
GO:0009507 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: chloroplast
SoyBase N/A ISS
GO:0003723 GO-mf
Annotation by Michelle Graham. GO Molecular Function: RNA binding
SoyBase N/A ISS
GO:0004809 GO-mf
Annotation by Michelle Graham. GO Molecular Function: tRNA (guanine-N2-)-methyltransferase activity
SoyBase N/A ISS
KOG1253
KOG
tRNA methyltransferase
JGI ISS
PTHR10631 Panther
N2,N2-DIMETHYLGUANOSINE TRNA METHYLTRANSERASE RELATED
JGI ISS
PF02005 PFAM
N2,N2-dimethylguanosine tRNA methyltransferase
JGI ISS
UniRef100_Q9LFU5 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Probable tRNA (guanine(26)-N(2))-dimethyltransferase 1 n=1 Tax=Arabidopsis thaliana RepID=TRM1_ARATH
SoyBase E_val: 0 ISS
UniRef100_UPI000233E33B UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI000233E33B related cluster n=1 Tax=unknown RepID=UPI000233E33B
SoyBase E_val: 0 ISS
Expression Patterns of Glyma19g04230
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma19g04230
Paralog Evidence Comments
Glyma13g06680 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma19g04230 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.19g033700 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma19g04230
Transcripts of Glyma19g04230
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma19g04230.3 sequence type=transcript gene model=Glyma19g04230 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
AAAGAAAAATTGAAAAAATTGGCAATAGGGTTTTCAGTTACCCCCGTTTTGAAAGCCATGTATATATAAACCATTGCTATGCTCGTTACGCACTCCCACGTTCTAAAACTGCAATCGAAGCTCGATACAGCAGCAACTAGAATTGGAATAAACCCTATTTCTCTTTTCAAGGGTTTTTGGTCTTTTTTCTGCTCCAAAACCGTAGAACAAAAAGCAGAGGAGAGGGAGAAGGAGCAGACCCTGAATTTGTTTTTGCATGATATAGGCAGAACAATGTCTTCAGATCTCAGTGATTATAAAATCATCAAGGAAGGAGAAGCTGAGATTCTTATGCACGCAAAGAATGAAGTCTTCTATAACAAAACTCAGGTCAATAACAGGGATATATCAATCGCTGTTTTGAGAACATTTATATCGAAGCGGAAGCAAGAGCATGAGGCCTACTTGTCCAAAAGAACAAAAGGGGCACAAAAGGTATCTGAAAATGGTGATTCTTCTGAATTGGTTAAGGAGGAAGTACCTGACTCAACTGCACCAGAAGATCATAAATCTAATGGGGAATGCGAAGTAGAGGAAGAGATATCTCCAGAAGAACAGTGCAGCACTATGGAAGAAGATTCGGTTAATGTCACTGAAGAATGCAGCACTACAGAGGGGCAAATCAATGTTTCAGAAGGAAAAGGAAAGAGGGAACTGAAGCCCCCAAGAGTTCTCGAGGCCTTGTCTGCTTCTGGTCTAAGGTCTCTTAGATATGCTCGTGAAGTAGAAGGAATTGGTCAGGTTATTGCTGTGGACAATGATAAAGCTTCTGTTGAAGCTTGTAGAAGGAACATCAAATTCAATGGTTCAGTTGCAGCTTCAAAAGTGGAGTCTCATCTTGCTGATGCTCGTGTATATATGCTAACCCATGCTAAAGAGTTTGATGTGGTTGATCTTGATCCTTATGGTTCACCTTCAATGTTTCTGGATTCAGCAGTTCAATCTGTTGTTGATGGAGGTATGCTGATGTGTACTGCAACAGACATGGCTGTGCTCTGTGGGGGAAATGGGGAGGTCTGCTATTCAAAATATGGATCATACCCATTGAGAGGGAAATATTGCCATGAAATGGCTTTGAGGATCGTGCTGGCTTGCATTGAGAGTCATGCTAATCGGTATAAGCGGTATATCGTTCCTGTGTTATCTGTTCAGATGGATTTTTATCTTCGTGTTTTTGTTCGCATATATACTTCTGCCAGTGCTATGAAAAACACCCCCCTAAAGCTTTCATATGTTTATCAGTGCACTGGTTGTGATTCTTTCCACCTACAGCCCATTGGAAGAACCATTTCCAAGAATACTAGTGTCAGATATTTGCCTGGCTTTGGTCCTGTTGTTCCTCAAGAATGCCGTGATTGTGGGAAAAAATTCAATATGGGGGGCCCTATATGGTCTGCCCCTATCCACGACCAAGAATGGGTGGCTGCTATTCTAGCAGATGTGAAATCTATGAAAGACAGATATCCAGCTTATGATCGCATTTCAGCTGTGTTGACTACAATATCAGAGGAATTGCCAGATGTTCCCCTCTTTTTGAGTCTGCACAACCTCTGTGCAACCCTCAAATGCACTTCTCCATCAGCAATTATTTTCCGTTCTGCAGTGATCAATGCAGGCTATCGTATATCTGGAACTCATGTTAATCCATTGGGACTTAAATCAGATGCACCCATGGATGTTATTTGGGATATAATGCGCTGCTGGGTAAAAAATCATCCTGTGAAGCCTCAACCAGCAGATCAACCAGGAAGCATCATACTTGCAAAGGAACCTGTTCTTCAGGCTAATTTTGCTCGAGCTGTAGCATCTCTTAGCAAGGCACAAGCTAAGAAGGTTGCGCGCTTTCTTCCAAATCCTGAAAGACACTGGGGTCCAAAACTTAGGGCAGGACGTCAAATTACAAGCAAGCATGTCTCTCTTTTGGGTCCTGAAGCAATTAATGGAGCTCTCAATCAGGAAGACGATGAAGAACCTAAAAGTTCTTGAAGGACGTTCAAAATATTTGGGTACTTTGGTGGACCTTACCTATACTGGCTGTATACATTGGTAAAAATTCAACTCTCATGTCAAAGATATCGTTAAGATAAAATATATAATCAAAGGATAATCTTTATTC
Coding sequences of Glyma19g04230
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma19g04230.2 sequence type=CDS gene model=Glyma19g04230 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGCTCGTTACGCACTCCCACGTTCTAAAACTGCAATCGAAGCTCGATACAGCAGCAACTAGAATTGGAATAAACCCTATTTCTCTTTTCAAGGGTTTTTGGTCTTTTTTCTGCTCCAAAACCGTAGAACAAAAAGCAGAGGAGAGGGAGAAGGAGCAGACCCTGAATTTGTTTTTGCATGATATAGGCAGAACAATGTCTTCAGATCTCAGTGATTATAAAATCATCAAGGAAGGAGAAGCTGAGATTCTTATGCACGCAAAGAATGAAGTCTTCTATAACAAAACTCAGGTCAATAACAGGGATATATCAATCGCTGTTTTGAGAACATTTATATCGAAGCGGAAGCAAGAGCATGAGGCCTACTTGTCCAAAAGAACAAAAGGGGCACAAAAGGTATCTGAAAATGGTGATTCTTCTGAATTGGTTAAGGAGGAAGTACCTGACTCAACTGCACCAGAAGATCATAAATCTAATGGGGAATGCGAAGTAGAGGAAGAGATATCTCCAGAAGAACAGTGCAGCACTATGGAAGAAGATTCGGTTAATGTCACTGAAGAATGCAGCACTACAGAGGGGCAAATCAATGTTTCAGAAGGAAAAGGAAAGAGGGAACTGAAGCCCCCAAGAGTTCTCGAGGCCTTGTCTGCTTCTGGTCTAAGGTCTCTTAGATATGCTCGTGAAGTAGAAGGAATTGGTCAGGTTATTGCTGTGGACAATGATAAAGCTTCTGTTGAAGCTTGTAGAAGGAACATCAAATTCAATGGTTCAGTTGCAGCTTCAAAAGTGGAGTCTCATCTTGCTGATGCTCGTGTATATATGCTAACCCATGCTAAAGAGTTTGATGTGGTTGATCTTGATCCTTATGGTTCACCTTCAATGTTTCTGGATTCAGCAGTTCAATCTGTTGTTGATGGAGGTATGCTGATGTGTACTGCAACAGACATGGCTGTGCTCTGTGGGGGAAATGGGGAGGTCTGCTATTCAAAATATGGATCATACCCATTGAGAGGGAAATATTGCCATGAAATGGCTTTGAGGATCGTGCTGGCTTGCATTGAGAGTCATGCTAATCGGTATAAGCGGTATATCGTTCCTGTGTTATCTGTTCAGATGGATTTTTATCTTCGTGTTTTTGTTCGCATATATACTTCTGCCAGTGCTATGAAAAACACCCCCCTAAAGCTTTCATATGTTTATCAGTGCACTGGTTGTGATTCTTTCCACCTACAGCCCATTGGAAGAACCATTTCCAAGAATACTAGTGTCAGATATTTGCCTGGCTTTGGTCCTGTTGTTCCTCAAGAATGCCGTGATTGTGGGAAAAAATTCAATATGGGGGGCCCTATATGGTCTGCCCCTATCCACGACCAAGAATGGGTGGCTGCTATTCTAGCAGATGTGAAATCTATGAAAGACAGATATCCAGCTTATGATCGCATTTCAGCTGTGTTGACTACAATATCAGAGGAATTGCCAGATGTTCCCCTCTTTTTGAGTCTGCACAACCTCTGTGCAACCCTCAAATGCACTTCTCCATCAGCAATTATTTTCCGTTCTGCAGTGATCAATGCAGGCTATCGTATATCTGGAACTCATGTTAATCCATTGGGACTTAAATCAGATGCACCCATGGATGTTATTTGGGATATAATGCGCTGCTGGGTAAAAAATCATCCTGTGAAGCCTCAACCAGCAGATCAACCAGGAAGCATCATACTTGCAAAGGAACCTGTTCTTCAGGCTAATTTTGCTCGAGCTGTAGCATCTCTTAGCAAGGCACAAGCTAAGAAGGTTGCGCGCTTTCTTCCAAATCCTGAAAGACACTGGGGTCCAAAACTTAGGGCAGGACGTCAAATTACAAGCAAGCATGTCTCTCTTTTGGGTCCTGAAGCAATTAATGGAGCTCTCAATCAGGAAGACGATGAAGAACCTAAAAGTAAGAAGCCAAAGACCGAAGATAGTGTCACTTCTTAG
>Glyma19g04230.3 sequence type=CDS gene model=Glyma19g04230 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGCTCGTTACGCACTCCCACGTTCTAAAACTGCAATCGAAGCTCGATACAGCAGCAACTAGAATTGGAATAAACCCTATTTCTCTTTTCAAGGGTTTTTGGTCTTTTTTCTGCTCCAAAACCGTAGAACAAAAAGCAGAGGAGAGGGAGAAGGAGCAGACCCTGAATTTGTTTTTGCATGATATAGGCAGAACAATGTCTTCAGATCTCAGTGATTATAAAATCATCAAGGAAGGAGAAGCTGAGATTCTTATGCACGCAAAGAATGAAGTCTTCTATAACAAAACTCAGGTCAATAACAGGGATATATCAATCGCTGTTTTGAGAACATTTATATCGAAGCGGAAGCAAGAGCATGAGGCCTACTTGTCCAAAAGAACAAAAGGGGCACAAAAGGTATCTGAAAATGGTGATTCTTCTGAATTGGTTAAGGAGGAAGTACCTGACTCAACTGCACCAGAAGATCATAAATCTAATGGGGAATGCGAAGTAGAGGAAGAGATATCTCCAGAAGAACAGTGCAGCACTATGGAAGAAGATTCGGTTAATGTCACTGAAGAATGCAGCACTACAGAGGGGCAAATCAATGTTTCAGAAGGAAAAGGAAAGAGGGAACTGAAGCCCCCAAGAGTTCTCGAGGCCTTGTCTGCTTCTGGTCTAAGGTCTCTTAGATATGCTCGTGAAGTAGAAGGAATTGGTCAGGTTATTGCTGTGGACAATGATAAAGCTTCTGTTGAAGCTTGTAGAAGGAACATCAAATTCAATGGTTCAGTTGCAGCTTCAAAAGTGGAGTCTCATCTTGCTGATGCTCGTGTATATATGCTAACCCATGCTAAAGAGTTTGATGTGGTTGATCTTGATCCTTATGGTTCACCTTCAATGTTTCTGGATTCAGCAGTTCAATCTGTTGTTGATGGAGGTATGCTGATGTGTACTGCAACAGACATGGCTGTGCTCTGTGGGGGAAATGGGGAGGTCTGCTATTCAAAATATGGATCATACCCATTGAGAGGGAAATATTGCCATGAAATGGCTTTGAGGATCGTGCTGGCTTGCATTGAGAGTCATGCTAATCGGTATAAGCGGTATATCGTTCCTGTGTTATCTGTTCAGATGGATTTTTATCTTCGTGTTTTTGTTCGCATATATACTTCTGCCAGTGCTATGAAAAACACCCCCCTAAAGCTTTCATATGTTTATCAGTGCACTGGTTGTGATTCTTTCCACCTACAGCCCATTGGAAGAACCATTTCCAAGAATACTAGTGTCAGATATTTGCCTGGCTTTGGTCCTGTTGTTCCTCAAGAATGCCGTGATTGTGGGAAAAAATTCAATATGGGGGGCCCTATATGGTCTGCCCCTATCCACGACCAAGAATGGGTGGCTGCTATTCTAGCAGATGTGAAATCTATGAAAGACAGATATCCAGCTTATGATCGCATTTCAGCTGTGTTGACTACAATATCAGAGGAATTGCCAGATGTTCCCCTCTTTTTGAGTCTGCACAACCTCTGTGCAACCCTCAAATGCACTTCTCCATCAGCAATTATTTTCCGTTCTGCAGTGATCAATGCAGGCTATCGTATATCTGGAACTCATGTTAATCCATTGGGACTTAAATCAGATGCACCCATGGATGTTATTTGGGATATAATGCGCTGCTGGGTAAAAAATCATCCTGTGAAGCCTCAACCAGCAGATCAACCAGGAAGCATCATACTTGCAAAGGAACCTGTTCTTCAGGCTAATTTTGCTCGAGCTGTAGCATCTCTTAGCAAGGCACAAGCTAAGAAGGTTGCGCGCTTTCTTCCAAATCCTGAAAGACACTGGGGTCCAAAACTTAGGGCAGGACGTCAAATTACAAGCAAGCATGTCTCTCTTTTGGGTCCTGAAGCAATTAATGGAGCTCTCAATCAGGAAGACGATGAAGAACCTAAAAGTTCTTGA
Predicted protein sequences of Glyma19g04230
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma19g04230.2 sequence type=predicted peptide gene model=Glyma19g04230 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MLVTHSHVLKLQSKLDTAATRIGINPISLFKGFWSFFCSKTVEQKAEEREKEQTLNLFLHDIGRTMSSDLSDYKIIKEGEAEILMHAKNEVFYNKTQVNNRDISIAVLRTFISKRKQEHEAYLSKRTKGAQKVSENGDSSELVKEEVPDSTAPEDHKSNGECEVEEEISPEEQCSTMEEDSVNVTEECSTTEGQINVSEGKGKRELKPPRVLEALSASGLRSLRYAREVEGIGQVIAVDNDKASVEACRRNIKFNGSVAASKVESHLADARVYMLTHAKEFDVVDLDPYGSPSMFLDSAVQSVVDGGMLMCTATDMAVLCGGNGEVCYSKYGSYPLRGKYCHEMALRIVLACIESHANRYKRYIVPVLSVQMDFYLRVFVRIYTSASAMKNTPLKLSYVYQCTGCDSFHLQPIGRTISKNTSVRYLPGFGPVVPQECRDCGKKFNMGGPIWSAPIHDQEWVAAILADVKSMKDRYPAYDRISAVLTTISEELPDVPLFLSLHNLCATLKCTSPSAIIFRSAVINAGYRISGTHVNPLGLKSDAPMDVIWDIMRCWVKNHPVKPQPADQPGSIILAKEPVLQANFARAVASLSKAQAKKVARFLPNPERHWGPKLRAGRQITSKHVSLLGPEAINGALNQEDDEEPKSKKPKTEDSVTS*
>Glyma19g04230.3 sequence type=predicted peptide gene model=Glyma19g04230 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MLVTHSHVLKLQSKLDTAATRIGINPISLFKGFWSFFCSKTVEQKAEEREKEQTLNLFLHDIGRTMSSDLSDYKIIKEGEAEILMHAKNEVFYNKTQVNNRDISIAVLRTFISKRKQEHEAYLSKRTKGAQKVSENGDSSELVKEEVPDSTAPEDHKSNGECEVEEEISPEEQCSTMEEDSVNVTEECSTTEGQINVSEGKGKRELKPPRVLEALSASGLRSLRYAREVEGIGQVIAVDNDKASVEACRRNIKFNGSVAASKVESHLADARVYMLTHAKEFDVVDLDPYGSPSMFLDSAVQSVVDGGMLMCTATDMAVLCGGNGEVCYSKYGSYPLRGKYCHEMALRIVLACIESHANRYKRYIVPVLSVQMDFYLRVFVRIYTSASAMKNTPLKLSYVYQCTGCDSFHLQPIGRTISKNTSVRYLPGFGPVVPQECRDCGKKFNMGGPIWSAPIHDQEWVAAILADVKSMKDRYPAYDRISAVLTTISEELPDVPLFLSLHNLCATLKCTSPSAIIFRSAVINAGYRISGTHVNPLGLKSDAPMDVIWDIMRCWVKNHPVKPQPADQPGSIILAKEPVLQANFARAVASLSKAQAKKVARFLPNPERHWGPKLRAGRQITSKHVSLLGPEAINGALNQEDDEEPKSS*