SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G15810 | AT | Annotation by Michelle Graham. TAIR10: N2,N2-dimethylguanosine tRNA methyltransferase | chr5:5157798-5161121 FORWARD LENGTH=691 | SoyBase | E_val: 0 | ISS |
| GO:0006406 | GO-bp | Annotation by Michelle Graham. GO Biological Process: mRNA export from nucleus | SoyBase | N/A | ISS |
| GO:0006606 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein import into nucleus | SoyBase | N/A | ISS |
| GO:0008033 | GO-bp | Annotation by Michelle Graham. GO Biological Process: tRNA processing | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0003723 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: RNA binding | SoyBase | N/A | ISS |
| GO:0004809 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: tRNA (guanine-N2-)-methyltransferase activity | SoyBase | N/A | ISS |
| KOG1253 | KOG | tRNA methyltransferase | JGI | ISS | |
| PTHR10631 | Panther | N2,N2-DIMETHYLGUANOSINE TRNA METHYLTRANSERASE RELATED | JGI | ISS | |
| PF02005 | PFAM | N2,N2-dimethylguanosine tRNA methyltransferase | JGI | ISS | |
| UniRef100_Q9LFU5 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Probable tRNA (guanine(26)-N(2))-dimethyltransferase 1 n=1 Tax=Arabidopsis thaliana RepID=TRM1_ARATH | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233E33B | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233E33B related cluster n=1 Tax=unknown RepID=UPI000233E33B | SoyBase | E_val: 0 | ISS |
|
Glyma19g04230 not represented in the dataset |
Glyma19g04230 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma13g06680 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.19g033700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma19g04230.3 sequence type=transcript gene model=Glyma19g04230 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high AAAGAAAAATTGAAAAAATTGGCAATAGGGTTTTCAGTTACCCCCGTTTTGAAAGCCATGTATATATAAACCATTGCTATGCTCGTTACGCACTCCCACGTTCTAAAACTGCAATCGAAGCTCGATACAGCAGCAACTAGAATTGGAATAAACCCTATTTCTCTTTTCAAGGGTTTTTGGTCTTTTTTCTGCTCCAAAACCGTAGAACAAAAAGCAGAGGAGAGGGAGAAGGAGCAGACCCTGAATTTGTTTTTGCATGATATAGGCAGAACAATGTCTTCAGATCTCAGTGATTATAAAATCATCAAGGAAGGAGAAGCTGAGATTCTTATGCACGCAAAGAATGAAGTCTTCTATAACAAAACTCAGGTCAATAACAGGGATATATCAATCGCTGTTTTGAGAACATTTATATCGAAGCGGAAGCAAGAGCATGAGGCCTACTTGTCCAAAAGAACAAAAGGGGCACAAAAGGTATCTGAAAATGGTGATTCTTCTGAATTGGTTAAGGAGGAAGTACCTGACTCAACTGCACCAGAAGATCATAAATCTAATGGGGAATGCGAAGTAGAGGAAGAGATATCTCCAGAAGAACAGTGCAGCACTATGGAAGAAGATTCGGTTAATGTCACTGAAGAATGCAGCACTACAGAGGGGCAAATCAATGTTTCAGAAGGAAAAGGAAAGAGGGAACTGAAGCCCCCAAGAGTTCTCGAGGCCTTGTCTGCTTCTGGTCTAAGGTCTCTTAGATATGCTCGTGAAGTAGAAGGAATTGGTCAGGTTATTGCTGTGGACAATGATAAAGCTTCTGTTGAAGCTTGTAGAAGGAACATCAAATTCAATGGTTCAGTTGCAGCTTCAAAAGTGGAGTCTCATCTTGCTGATGCTCGTGTATATATGCTAACCCATGCTAAAGAGTTTGATGTGGTTGATCTTGATCCTTATGGTTCACCTTCAATGTTTCTGGATTCAGCAGTTCAATCTGTTGTTGATGGAGGTATGCTGATGTGTACTGCAACAGACATGGCTGTGCTCTGTGGGGGAAATGGGGAGGTCTGCTATTCAAAATATGGATCATACCCATTGAGAGGGAAATATTGCCATGAAATGGCTTTGAGGATCGTGCTGGCTTGCATTGAGAGTCATGCTAATCGGTATAAGCGGTATATCGTTCCTGTGTTATCTGTTCAGATGGATTTTTATCTTCGTGTTTTTGTTCGCATATATACTTCTGCCAGTGCTATGAAAAACACCCCCCTAAAGCTTTCATATGTTTATCAGTGCACTGGTTGTGATTCTTTCCACCTACAGCCCATTGGAAGAACCATTTCCAAGAATACTAGTGTCAGATATTTGCCTGGCTTTGGTCCTGTTGTTCCTCAAGAATGCCGTGATTGTGGGAAAAAATTCAATATGGGGGGCCCTATATGGTCTGCCCCTATCCACGACCAAGAATGGGTGGCTGCTATTCTAGCAGATGTGAAATCTATGAAAGACAGATATCCAGCTTATGATCGCATTTCAGCTGTGTTGACTACAATATCAGAGGAATTGCCAGATGTTCCCCTCTTTTTGAGTCTGCACAACCTCTGTGCAACCCTCAAATGCACTTCTCCATCAGCAATTATTTTCCGTTCTGCAGTGATCAATGCAGGCTATCGTATATCTGGAACTCATGTTAATCCATTGGGACTTAAATCAGATGCACCCATGGATGTTATTTGGGATATAATGCGCTGCTGGGTAAAAAATCATCCTGTGAAGCCTCAACCAGCAGATCAACCAGGAAGCATCATACTTGCAAAGGAACCTGTTCTTCAGGCTAATTTTGCTCGAGCTGTAGCATCTCTTAGCAAGGCACAAGCTAAGAAGGTTGCGCGCTTTCTTCCAAATCCTGAAAGACACTGGGGTCCAAAACTTAGGGCAGGACGTCAAATTACAAGCAAGCATGTCTCTCTTTTGGGTCCTGAAGCAATTAATGGAGCTCTCAATCAGGAAGACGATGAAGAACCTAAAAGTTCTTGAAGGACGTTCAAAATATTTGGGTACTTTGGTGGACCTTACCTATACTGGCTGTATACATTGGTAAAAATTCAACTCTCATGTCAAAGATATCGTTAAGATAAAATATATAATCAAAGGATAATCTTTATTC
>Glyma19g04230.2 sequence type=CDS gene model=Glyma19g04230 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCTCGTTACGCACTCCCACGTTCTAAAACTGCAATCGAAGCTCGATACAGCAGCAACTAGAATTGGAATAAACCCTATTTCTCTTTTCAAGGGTTTTTGGTCTTTTTTCTGCTCCAAAACCGTAGAACAAAAAGCAGAGGAGAGGGAGAAGGAGCAGACCCTGAATTTGTTTTTGCATGATATAGGCAGAACAATGTCTTCAGATCTCAGTGATTATAAAATCATCAAGGAAGGAGAAGCTGAGATTCTTATGCACGCAAAGAATGAAGTCTTCTATAACAAAACTCAGGTCAATAACAGGGATATATCAATCGCTGTTTTGAGAACATTTATATCGAAGCGGAAGCAAGAGCATGAGGCCTACTTGTCCAAAAGAACAAAAGGGGCACAAAAGGTATCTGAAAATGGTGATTCTTCTGAATTGGTTAAGGAGGAAGTACCTGACTCAACTGCACCAGAAGATCATAAATCTAATGGGGAATGCGAAGTAGAGGAAGAGATATCTCCAGAAGAACAGTGCAGCACTATGGAAGAAGATTCGGTTAATGTCACTGAAGAATGCAGCACTACAGAGGGGCAAATCAATGTTTCAGAAGGAAAAGGAAAGAGGGAACTGAAGCCCCCAAGAGTTCTCGAGGCCTTGTCTGCTTCTGGTCTAAGGTCTCTTAGATATGCTCGTGAAGTAGAAGGAATTGGTCAGGTTATTGCTGTGGACAATGATAAAGCTTCTGTTGAAGCTTGTAGAAGGAACATCAAATTCAATGGTTCAGTTGCAGCTTCAAAAGTGGAGTCTCATCTTGCTGATGCTCGTGTATATATGCTAACCCATGCTAAAGAGTTTGATGTGGTTGATCTTGATCCTTATGGTTCACCTTCAATGTTTCTGGATTCAGCAGTTCAATCTGTTGTTGATGGAGGTATGCTGATGTGTACTGCAACAGACATGGCTGTGCTCTGTGGGGGAAATGGGGAGGTCTGCTATTCAAAATATGGATCATACCCATTGAGAGGGAAATATTGCCATGAAATGGCTTTGAGGATCGTGCTGGCTTGCATTGAGAGTCATGCTAATCGGTATAAGCGGTATATCGTTCCTGTGTTATCTGTTCAGATGGATTTTTATCTTCGTGTTTTTGTTCGCATATATACTTCTGCCAGTGCTATGAAAAACACCCCCCTAAAGCTTTCATATGTTTATCAGTGCACTGGTTGTGATTCTTTCCACCTACAGCCCATTGGAAGAACCATTTCCAAGAATACTAGTGTCAGATATTTGCCTGGCTTTGGTCCTGTTGTTCCTCAAGAATGCCGTGATTGTGGGAAAAAATTCAATATGGGGGGCCCTATATGGTCTGCCCCTATCCACGACCAAGAATGGGTGGCTGCTATTCTAGCAGATGTGAAATCTATGAAAGACAGATATCCAGCTTATGATCGCATTTCAGCTGTGTTGACTACAATATCAGAGGAATTGCCAGATGTTCCCCTCTTTTTGAGTCTGCACAACCTCTGTGCAACCCTCAAATGCACTTCTCCATCAGCAATTATTTTCCGTTCTGCAGTGATCAATGCAGGCTATCGTATATCTGGAACTCATGTTAATCCATTGGGACTTAAATCAGATGCACCCATGGATGTTATTTGGGATATAATGCGCTGCTGGGTAAAAAATCATCCTGTGAAGCCTCAACCAGCAGATCAACCAGGAAGCATCATACTTGCAAAGGAACCTGTTCTTCAGGCTAATTTTGCTCGAGCTGTAGCATCTCTTAGCAAGGCACAAGCTAAGAAGGTTGCGCGCTTTCTTCCAAATCCTGAAAGACACTGGGGTCCAAAACTTAGGGCAGGACGTCAAATTACAAGCAAGCATGTCTCTCTTTTGGGTCCTGAAGCAATTAATGGAGCTCTCAATCAGGAAGACGATGAAGAACCTAAAAGTAAGAAGCCAAAGACCGAAGATAGTGTCACTTCTTAG >Glyma19g04230.3 sequence type=CDS gene model=Glyma19g04230 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCTCGTTACGCACTCCCACGTTCTAAAACTGCAATCGAAGCTCGATACAGCAGCAACTAGAATTGGAATAAACCCTATTTCTCTTTTCAAGGGTTTTTGGTCTTTTTTCTGCTCCAAAACCGTAGAACAAAAAGCAGAGGAGAGGGAGAAGGAGCAGACCCTGAATTTGTTTTTGCATGATATAGGCAGAACAATGTCTTCAGATCTCAGTGATTATAAAATCATCAAGGAAGGAGAAGCTGAGATTCTTATGCACGCAAAGAATGAAGTCTTCTATAACAAAACTCAGGTCAATAACAGGGATATATCAATCGCTGTTTTGAGAACATTTATATCGAAGCGGAAGCAAGAGCATGAGGCCTACTTGTCCAAAAGAACAAAAGGGGCACAAAAGGTATCTGAAAATGGTGATTCTTCTGAATTGGTTAAGGAGGAAGTACCTGACTCAACTGCACCAGAAGATCATAAATCTAATGGGGAATGCGAAGTAGAGGAAGAGATATCTCCAGAAGAACAGTGCAGCACTATGGAAGAAGATTCGGTTAATGTCACTGAAGAATGCAGCACTACAGAGGGGCAAATCAATGTTTCAGAAGGAAAAGGAAAGAGGGAACTGAAGCCCCCAAGAGTTCTCGAGGCCTTGTCTGCTTCTGGTCTAAGGTCTCTTAGATATGCTCGTGAAGTAGAAGGAATTGGTCAGGTTATTGCTGTGGACAATGATAAAGCTTCTGTTGAAGCTTGTAGAAGGAACATCAAATTCAATGGTTCAGTTGCAGCTTCAAAAGTGGAGTCTCATCTTGCTGATGCTCGTGTATATATGCTAACCCATGCTAAAGAGTTTGATGTGGTTGATCTTGATCCTTATGGTTCACCTTCAATGTTTCTGGATTCAGCAGTTCAATCTGTTGTTGATGGAGGTATGCTGATGTGTACTGCAACAGACATGGCTGTGCTCTGTGGGGGAAATGGGGAGGTCTGCTATTCAAAATATGGATCATACCCATTGAGAGGGAAATATTGCCATGAAATGGCTTTGAGGATCGTGCTGGCTTGCATTGAGAGTCATGCTAATCGGTATAAGCGGTATATCGTTCCTGTGTTATCTGTTCAGATGGATTTTTATCTTCGTGTTTTTGTTCGCATATATACTTCTGCCAGTGCTATGAAAAACACCCCCCTAAAGCTTTCATATGTTTATCAGTGCACTGGTTGTGATTCTTTCCACCTACAGCCCATTGGAAGAACCATTTCCAAGAATACTAGTGTCAGATATTTGCCTGGCTTTGGTCCTGTTGTTCCTCAAGAATGCCGTGATTGTGGGAAAAAATTCAATATGGGGGGCCCTATATGGTCTGCCCCTATCCACGACCAAGAATGGGTGGCTGCTATTCTAGCAGATGTGAAATCTATGAAAGACAGATATCCAGCTTATGATCGCATTTCAGCTGTGTTGACTACAATATCAGAGGAATTGCCAGATGTTCCCCTCTTTTTGAGTCTGCACAACCTCTGTGCAACCCTCAAATGCACTTCTCCATCAGCAATTATTTTCCGTTCTGCAGTGATCAATGCAGGCTATCGTATATCTGGAACTCATGTTAATCCATTGGGACTTAAATCAGATGCACCCATGGATGTTATTTGGGATATAATGCGCTGCTGGGTAAAAAATCATCCTGTGAAGCCTCAACCAGCAGATCAACCAGGAAGCATCATACTTGCAAAGGAACCTGTTCTTCAGGCTAATTTTGCTCGAGCTGTAGCATCTCTTAGCAAGGCACAAGCTAAGAAGGTTGCGCGCTTTCTTCCAAATCCTGAAAGACACTGGGGTCCAAAACTTAGGGCAGGACGTCAAATTACAAGCAAGCATGTCTCTCTTTTGGGTCCTGAAGCAATTAATGGAGCTCTCAATCAGGAAGACGATGAAGAACCTAAAAGTTCTTGA
>Glyma19g04230.2 sequence type=predicted peptide gene model=Glyma19g04230 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MLVTHSHVLKLQSKLDTAATRIGINPISLFKGFWSFFCSKTVEQKAEEREKEQTLNLFLHDIGRTMSSDLSDYKIIKEGEAEILMHAKNEVFYNKTQVNNRDISIAVLRTFISKRKQEHEAYLSKRTKGAQKVSENGDSSELVKEEVPDSTAPEDHKSNGECEVEEEISPEEQCSTMEEDSVNVTEECSTTEGQINVSEGKGKRELKPPRVLEALSASGLRSLRYAREVEGIGQVIAVDNDKASVEACRRNIKFNGSVAASKVESHLADARVYMLTHAKEFDVVDLDPYGSPSMFLDSAVQSVVDGGMLMCTATDMAVLCGGNGEVCYSKYGSYPLRGKYCHEMALRIVLACIESHANRYKRYIVPVLSVQMDFYLRVFVRIYTSASAMKNTPLKLSYVYQCTGCDSFHLQPIGRTISKNTSVRYLPGFGPVVPQECRDCGKKFNMGGPIWSAPIHDQEWVAAILADVKSMKDRYPAYDRISAVLTTISEELPDVPLFLSLHNLCATLKCTSPSAIIFRSAVINAGYRISGTHVNPLGLKSDAPMDVIWDIMRCWVKNHPVKPQPADQPGSIILAKEPVLQANFARAVASLSKAQAKKVARFLPNPERHWGPKLRAGRQITSKHVSLLGPEAINGALNQEDDEEPKSKKPKTEDSVTS* >Glyma19g04230.3 sequence type=predicted peptide gene model=Glyma19g04230 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MLVTHSHVLKLQSKLDTAATRIGINPISLFKGFWSFFCSKTVEQKAEEREKEQTLNLFLHDIGRTMSSDLSDYKIIKEGEAEILMHAKNEVFYNKTQVNNRDISIAVLRTFISKRKQEHEAYLSKRTKGAQKVSENGDSSELVKEEVPDSTAPEDHKSNGECEVEEEISPEEQCSTMEEDSVNVTEECSTTEGQINVSEGKGKRELKPPRVLEALSASGLRSLRYAREVEGIGQVIAVDNDKASVEACRRNIKFNGSVAASKVESHLADARVYMLTHAKEFDVVDLDPYGSPSMFLDSAVQSVVDGGMLMCTATDMAVLCGGNGEVCYSKYGSYPLRGKYCHEMALRIVLACIESHANRYKRYIVPVLSVQMDFYLRVFVRIYTSASAMKNTPLKLSYVYQCTGCDSFHLQPIGRTISKNTSVRYLPGFGPVVPQECRDCGKKFNMGGPIWSAPIHDQEWVAAILADVKSMKDRYPAYDRISAVLTTISEELPDVPLFLSLHNLCATLKCTSPSAIIFRSAVINAGYRISGTHVNPLGLKSDAPMDVIWDIMRCWVKNHPVKPQPADQPGSIILAKEPVLQANFARAVASLSKAQAKKVARFLPNPERHWGPKLRAGRQITSKHVSLLGPEAINGALNQEDDEEPKSS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
