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Report for Sequence Feature Glyma19g04230

Feature Type:gene_model
Chromosome:Gm19
Start:4300457
stop:4307766
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G15810AT Annotation by Michelle Graham. TAIR10: N2,N2-dimethylguanosine tRNA methyltransferase | chr5:5157798-5161121 FORWARD LENGTH=691 SoyBaseE_val: 0ISS
GO:0006406GO-bp Annotation by Michelle Graham. GO Biological Process: mRNA export from nucleus SoyBaseN/AISS
GO:0006606GO-bp Annotation by Michelle Graham. GO Biological Process: protein import into nucleus SoyBaseN/AISS
GO:0008033GO-bp Annotation by Michelle Graham. GO Biological Process: tRNA processing SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0003723GO-mf Annotation by Michelle Graham. GO Molecular Function: RNA binding SoyBaseN/AISS
GO:0004809GO-mf Annotation by Michelle Graham. GO Molecular Function: tRNA (guanine-N2-)-methyltransferase activity SoyBaseN/AISS
KOG1253 KOG tRNA methyltransferase JGI ISS
PTHR10631Panther N2,N2-DIMETHYLGUANOSINE TRNA METHYLTRANSERASE RELATED JGI ISS
PF02005PFAM N2,N2-dimethylguanosine tRNA methyltransferase JGI ISS
UniRef100_Q9LFU5UniRef Annotation by Michelle Graham. Most informative UniRef hit: Probable tRNA (guanine(26)-N(2))-dimethyltransferase 1 n=1 Tax=Arabidopsis thaliana RepID=TRM1_ARATH SoyBaseE_val: 0ISS
UniRef100_UPI000233E33BUniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233E33B related cluster n=1 Tax=unknown RepID=UPI000233E33B SoyBaseE_val: 0ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma19g04230 not represented in the dataset

Glyma19g04230 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma13g06680 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.19g033700 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma19g04230.3   sequence type=transcript   gene model=Glyma19g04230   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAAGAAAAATTGAAAAAATTGGCAATAGGGTTTTCAGTTACCCCCGTTTTGAAAGCCATGTATATATAAACCATTGCTATGCTCGTTACGCACTCCCACGTTCTAAAACTGCAATCGAAGCTCGATACAGCAGCAACTAGAATTGGAATAAACCCTATTTCTCTTTTCAAGGGTTTTTGGTCTTTTTTCTGCTCCAAAACCGTAGAACAAAAAGCAGAGGAGAGGGAGAAGGAGCAGACCCTGAATTTGTTTTTGCATGATATAGGCAGAACAATGTCTTCAGATCTCAGTGATTATAAAATCATCAAGGAAGGAGAAGCTGAGATTCTTATGCACGCAAAGAATGAAGTCTTCTATAACAAAACTCAGGTCAATAACAGGGATATATCAATCGCTGTTTTGAGAACATTTATATCGAAGCGGAAGCAAGAGCATGAGGCCTACTTGTCCAAAAGAACAAAAGGGGCACAAAAGGTATCTGAAAATGGTGATTCTTCTGAATTGGTTAAGGAGGAAGTACCTGACTCAACTGCACCAGAAGATCATAAATCTAATGGGGAATGCGAAGTAGAGGAAGAGATATCTCCAGAAGAACAGTGCAGCACTATGGAAGAAGATTCGGTTAATGTCACTGAAGAATGCAGCACTACAGAGGGGCAAATCAATGTTTCAGAAGGAAAAGGAAAGAGGGAACTGAAGCCCCCAAGAGTTCTCGAGGCCTTGTCTGCTTCTGGTCTAAGGTCTCTTAGATATGCTCGTGAAGTAGAAGGAATTGGTCAGGTTATTGCTGTGGACAATGATAAAGCTTCTGTTGAAGCTTGTAGAAGGAACATCAAATTCAATGGTTCAGTTGCAGCTTCAAAAGTGGAGTCTCATCTTGCTGATGCTCGTGTATATATGCTAACCCATGCTAAAGAGTTTGATGTGGTTGATCTTGATCCTTATGGTTCACCTTCAATGTTTCTGGATTCAGCAGTTCAATCTGTTGTTGATGGAGGTATGCTGATGTGTACTGCAACAGACATGGCTGTGCTCTGTGGGGGAAATGGGGAGGTCTGCTATTCAAAATATGGATCATACCCATTGAGAGGGAAATATTGCCATGAAATGGCTTTGAGGATCGTGCTGGCTTGCATTGAGAGTCATGCTAATCGGTATAAGCGGTATATCGTTCCTGTGTTATCTGTTCAGATGGATTTTTATCTTCGTGTTTTTGTTCGCATATATACTTCTGCCAGTGCTATGAAAAACACCCCCCTAAAGCTTTCATATGTTTATCAGTGCACTGGTTGTGATTCTTTCCACCTACAGCCCATTGGAAGAACCATTTCCAAGAATACTAGTGTCAGATATTTGCCTGGCTTTGGTCCTGTTGTTCCTCAAGAATGCCGTGATTGTGGGAAAAAATTCAATATGGGGGGCCCTATATGGTCTGCCCCTATCCACGACCAAGAATGGGTGGCTGCTATTCTAGCAGATGTGAAATCTATGAAAGACAGATATCCAGCTTATGATCGCATTTCAGCTGTGTTGACTACAATATCAGAGGAATTGCCAGATGTTCCCCTCTTTTTGAGTCTGCACAACCTCTGTGCAACCCTCAAATGCACTTCTCCATCAGCAATTATTTTCCGTTCTGCAGTGATCAATGCAGGCTATCGTATATCTGGAACTCATGTTAATCCATTGGGACTTAAATCAGATGCACCCATGGATGTTATTTGGGATATAATGCGCTGCTGGGTAAAAAATCATCCTGTGAAGCCTCAACCAGCAGATCAACCAGGAAGCATCATACTTGCAAAGGAACCTGTTCTTCAGGCTAATTTTGCTCGAGCTGTAGCATCTCTTAGCAAGGCACAAGCTAAGAAGGTTGCGCGCTTTCTTCCAAATCCTGAAAGACACTGGGGTCCAAAACTTAGGGCAGGACGTCAAATTACAAGCAAGCATGTCTCTCTTTTGGGTCCTGAAGCAATTAATGGAGCTCTCAATCAGGAAGACGATGAAGAACCTAAAAGTTCTTGAAGGACGTTCAAAATATTTGGGTACTTTGGTGGACCTTACCTATACTGGCTGTATACATTGGTAAAAATTCAACTCTCATGTCAAAGATATCGTTAAGATAAAATATATAATCAAAGGATAATCTTTATTC

>Glyma19g04230.2   sequence type=CDS   gene model=Glyma19g04230   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTCGTTACGCACTCCCACGTTCTAAAACTGCAATCGAAGCTCGATACAGCAGCAACTAGAATTGGAATAAACCCTATTTCTCTTTTCAAGGGTTTTTGGTCTTTTTTCTGCTCCAAAACCGTAGAACAAAAAGCAGAGGAGAGGGAGAAGGAGCAGACCCTGAATTTGTTTTTGCATGATATAGGCAGAACAATGTCTTCAGATCTCAGTGATTATAAAATCATCAAGGAAGGAGAAGCTGAGATTCTTATGCACGCAAAGAATGAAGTCTTCTATAACAAAACTCAGGTCAATAACAGGGATATATCAATCGCTGTTTTGAGAACATTTATATCGAAGCGGAAGCAAGAGCATGAGGCCTACTTGTCCAAAAGAACAAAAGGGGCACAAAAGGTATCTGAAAATGGTGATTCTTCTGAATTGGTTAAGGAGGAAGTACCTGACTCAACTGCACCAGAAGATCATAAATCTAATGGGGAATGCGAAGTAGAGGAAGAGATATCTCCAGAAGAACAGTGCAGCACTATGGAAGAAGATTCGGTTAATGTCACTGAAGAATGCAGCACTACAGAGGGGCAAATCAATGTTTCAGAAGGAAAAGGAAAGAGGGAACTGAAGCCCCCAAGAGTTCTCGAGGCCTTGTCTGCTTCTGGTCTAAGGTCTCTTAGATATGCTCGTGAAGTAGAAGGAATTGGTCAGGTTATTGCTGTGGACAATGATAAAGCTTCTGTTGAAGCTTGTAGAAGGAACATCAAATTCAATGGTTCAGTTGCAGCTTCAAAAGTGGAGTCTCATCTTGCTGATGCTCGTGTATATATGCTAACCCATGCTAAAGAGTTTGATGTGGTTGATCTTGATCCTTATGGTTCACCTTCAATGTTTCTGGATTCAGCAGTTCAATCTGTTGTTGATGGAGGTATGCTGATGTGTACTGCAACAGACATGGCTGTGCTCTGTGGGGGAAATGGGGAGGTCTGCTATTCAAAATATGGATCATACCCATTGAGAGGGAAATATTGCCATGAAATGGCTTTGAGGATCGTGCTGGCTTGCATTGAGAGTCATGCTAATCGGTATAAGCGGTATATCGTTCCTGTGTTATCTGTTCAGATGGATTTTTATCTTCGTGTTTTTGTTCGCATATATACTTCTGCCAGTGCTATGAAAAACACCCCCCTAAAGCTTTCATATGTTTATCAGTGCACTGGTTGTGATTCTTTCCACCTACAGCCCATTGGAAGAACCATTTCCAAGAATACTAGTGTCAGATATTTGCCTGGCTTTGGTCCTGTTGTTCCTCAAGAATGCCGTGATTGTGGGAAAAAATTCAATATGGGGGGCCCTATATGGTCTGCCCCTATCCACGACCAAGAATGGGTGGCTGCTATTCTAGCAGATGTGAAATCTATGAAAGACAGATATCCAGCTTATGATCGCATTTCAGCTGTGTTGACTACAATATCAGAGGAATTGCCAGATGTTCCCCTCTTTTTGAGTCTGCACAACCTCTGTGCAACCCTCAAATGCACTTCTCCATCAGCAATTATTTTCCGTTCTGCAGTGATCAATGCAGGCTATCGTATATCTGGAACTCATGTTAATCCATTGGGACTTAAATCAGATGCACCCATGGATGTTATTTGGGATATAATGCGCTGCTGGGTAAAAAATCATCCTGTGAAGCCTCAACCAGCAGATCAACCAGGAAGCATCATACTTGCAAAGGAACCTGTTCTTCAGGCTAATTTTGCTCGAGCTGTAGCATCTCTTAGCAAGGCACAAGCTAAGAAGGTTGCGCGCTTTCTTCCAAATCCTGAAAGACACTGGGGTCCAAAACTTAGGGCAGGACGTCAAATTACAAGCAAGCATGTCTCTCTTTTGGGTCCTGAAGCAATTAATGGAGCTCTCAATCAGGAAGACGATGAAGAACCTAAAAGTAAGAAGCCAAAGACCGAAGATAGTGTCACTTCTTAG

>Glyma19g04230.3   sequence type=CDS   gene model=Glyma19g04230   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTCGTTACGCACTCCCACGTTCTAAAACTGCAATCGAAGCTCGATACAGCAGCAACTAGAATTGGAATAAACCCTATTTCTCTTTTCAAGGGTTTTTGGTCTTTTTTCTGCTCCAAAACCGTAGAACAAAAAGCAGAGGAGAGGGAGAAGGAGCAGACCCTGAATTTGTTTTTGCATGATATAGGCAGAACAATGTCTTCAGATCTCAGTGATTATAAAATCATCAAGGAAGGAGAAGCTGAGATTCTTATGCACGCAAAGAATGAAGTCTTCTATAACAAAACTCAGGTCAATAACAGGGATATATCAATCGCTGTTTTGAGAACATTTATATCGAAGCGGAAGCAAGAGCATGAGGCCTACTTGTCCAAAAGAACAAAAGGGGCACAAAAGGTATCTGAAAATGGTGATTCTTCTGAATTGGTTAAGGAGGAAGTACCTGACTCAACTGCACCAGAAGATCATAAATCTAATGGGGAATGCGAAGTAGAGGAAGAGATATCTCCAGAAGAACAGTGCAGCACTATGGAAGAAGATTCGGTTAATGTCACTGAAGAATGCAGCACTACAGAGGGGCAAATCAATGTTTCAGAAGGAAAAGGAAAGAGGGAACTGAAGCCCCCAAGAGTTCTCGAGGCCTTGTCTGCTTCTGGTCTAAGGTCTCTTAGATATGCTCGTGAAGTAGAAGGAATTGGTCAGGTTATTGCTGTGGACAATGATAAAGCTTCTGTTGAAGCTTGTAGAAGGAACATCAAATTCAATGGTTCAGTTGCAGCTTCAAAAGTGGAGTCTCATCTTGCTGATGCTCGTGTATATATGCTAACCCATGCTAAAGAGTTTGATGTGGTTGATCTTGATCCTTATGGTTCACCTTCAATGTTTCTGGATTCAGCAGTTCAATCTGTTGTTGATGGAGGTATGCTGATGTGTACTGCAACAGACATGGCTGTGCTCTGTGGGGGAAATGGGGAGGTCTGCTATTCAAAATATGGATCATACCCATTGAGAGGGAAATATTGCCATGAAATGGCTTTGAGGATCGTGCTGGCTTGCATTGAGAGTCATGCTAATCGGTATAAGCGGTATATCGTTCCTGTGTTATCTGTTCAGATGGATTTTTATCTTCGTGTTTTTGTTCGCATATATACTTCTGCCAGTGCTATGAAAAACACCCCCCTAAAGCTTTCATATGTTTATCAGTGCACTGGTTGTGATTCTTTCCACCTACAGCCCATTGGAAGAACCATTTCCAAGAATACTAGTGTCAGATATTTGCCTGGCTTTGGTCCTGTTGTTCCTCAAGAATGCCGTGATTGTGGGAAAAAATTCAATATGGGGGGCCCTATATGGTCTGCCCCTATCCACGACCAAGAATGGGTGGCTGCTATTCTAGCAGATGTGAAATCTATGAAAGACAGATATCCAGCTTATGATCGCATTTCAGCTGTGTTGACTACAATATCAGAGGAATTGCCAGATGTTCCCCTCTTTTTGAGTCTGCACAACCTCTGTGCAACCCTCAAATGCACTTCTCCATCAGCAATTATTTTCCGTTCTGCAGTGATCAATGCAGGCTATCGTATATCTGGAACTCATGTTAATCCATTGGGACTTAAATCAGATGCACCCATGGATGTTATTTGGGATATAATGCGCTGCTGGGTAAAAAATCATCCTGTGAAGCCTCAACCAGCAGATCAACCAGGAAGCATCATACTTGCAAAGGAACCTGTTCTTCAGGCTAATTTTGCTCGAGCTGTAGCATCTCTTAGCAAGGCACAAGCTAAGAAGGTTGCGCGCTTTCTTCCAAATCCTGAAAGACACTGGGGTCCAAAACTTAGGGCAGGACGTCAAATTACAAGCAAGCATGTCTCTCTTTTGGGTCCTGAAGCAATTAATGGAGCTCTCAATCAGGAAGACGATGAAGAACCTAAAAGTTCTTGA

>Glyma19g04230.2   sequence type=predicted peptide   gene model=Glyma19g04230   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLVTHSHVLKLQSKLDTAATRIGINPISLFKGFWSFFCSKTVEQKAEEREKEQTLNLFLHDIGRTMSSDLSDYKIIKEGEAEILMHAKNEVFYNKTQVNNRDISIAVLRTFISKRKQEHEAYLSKRTKGAQKVSENGDSSELVKEEVPDSTAPEDHKSNGECEVEEEISPEEQCSTMEEDSVNVTEECSTTEGQINVSEGKGKRELKPPRVLEALSASGLRSLRYAREVEGIGQVIAVDNDKASVEACRRNIKFNGSVAASKVESHLADARVYMLTHAKEFDVVDLDPYGSPSMFLDSAVQSVVDGGMLMCTATDMAVLCGGNGEVCYSKYGSYPLRGKYCHEMALRIVLACIESHANRYKRYIVPVLSVQMDFYLRVFVRIYTSASAMKNTPLKLSYVYQCTGCDSFHLQPIGRTISKNTSVRYLPGFGPVVPQECRDCGKKFNMGGPIWSAPIHDQEWVAAILADVKSMKDRYPAYDRISAVLTTISEELPDVPLFLSLHNLCATLKCTSPSAIIFRSAVINAGYRISGTHVNPLGLKSDAPMDVIWDIMRCWVKNHPVKPQPADQPGSIILAKEPVLQANFARAVASLSKAQAKKVARFLPNPERHWGPKLRAGRQITSKHVSLLGPEAINGALNQEDDEEPKSKKPKTEDSVTS*

>Glyma19g04230.3   sequence type=predicted peptide   gene model=Glyma19g04230   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLVTHSHVLKLQSKLDTAATRIGINPISLFKGFWSFFCSKTVEQKAEEREKEQTLNLFLHDIGRTMSSDLSDYKIIKEGEAEILMHAKNEVFYNKTQVNNRDISIAVLRTFISKRKQEHEAYLSKRTKGAQKVSENGDSSELVKEEVPDSTAPEDHKSNGECEVEEEISPEEQCSTMEEDSVNVTEECSTTEGQINVSEGKGKRELKPPRVLEALSASGLRSLRYAREVEGIGQVIAVDNDKASVEACRRNIKFNGSVAASKVESHLADARVYMLTHAKEFDVVDLDPYGSPSMFLDSAVQSVVDGGMLMCTATDMAVLCGGNGEVCYSKYGSYPLRGKYCHEMALRIVLACIESHANRYKRYIVPVLSVQMDFYLRVFVRIYTSASAMKNTPLKLSYVYQCTGCDSFHLQPIGRTISKNTSVRYLPGFGPVVPQECRDCGKKFNMGGPIWSAPIHDQEWVAAILADVKSMKDRYPAYDRISAVLTTISEELPDVPLFLSLHNLCATLKCTSPSAIIFRSAVINAGYRISGTHVNPLGLKSDAPMDVIWDIMRCWVKNHPVKPQPADQPGSIILAKEPVLQANFARAVASLSKAQAKKVARFLPNPERHWGPKLRAGRQITSKHVSLLGPEAINGALNQEDDEEPKSS*







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