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Report for Sequence Feature Glyma19g04190
Feature Type: gene_model
Chromosome: Gm19
Start: 4269188
stop: 4274819
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma19g04190
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT5G15640 AT
Annotation by Michelle Graham. TAIR10: Mitochondrial substrate carrier family protein | chr5:5087590-5089677 FORWARD LENGTH=323
SoyBase E_val: 5.00E-165 ISS
GO:0006810 GO-bp
Annotation by Michelle Graham. GO Biological Process: transport
SoyBase N/A ISS
GO:0006839 GO-bp
Annotation by Michelle Graham. GO Biological Process: mitochondrial transport
SoyBase N/A ISS
GO:0055085 GO-bp
Annotation by Michelle Graham. GO Biological Process: transmembrane transport
SoyBase N/A ISS
GO:0005739 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion
SoyBase N/A ISS
GO:0005743 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: mitochondrial inner membrane
SoyBase N/A ISS
KOG0765
KOG
Predicted mitochondrial carrier protein
JGI ISS
PTHR24089 Panther
FAMILY NOT NAMED
JGI ISS
PTHR24089:SF94 Panther
SUBFAMILY NOT NAMED
JGI ISS
PF00153 PFAM
Mitochondrial carrier protein
JGI ISS
UniRef100_B9SYD0 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Mitochondrial carnitine/acylcarnitine carrier protein, putative n=1 Tax=Ricinus communis RepID=B9SYD0_RICCO
SoyBase E_val: 1.00E-164 ISS
UniRef100_UPI000233E063 UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI000233E063 related cluster n=1 Tax=unknown RepID=UPI000233E063
SoyBase E_val: 0 ISS
Expression Patterns of Glyma19g04190
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma19g04190
Paralog Evidence Comments
Glyma13g06650 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma19g04190 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.19g033300 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma19g04190
Transcripts of Glyma19g04190
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma19g04190.3 sequence type=transcript gene model=Glyma19g04190 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
TTTAAATACAGAAGGTTCTTTGCTTTCATTTCTTGAGTTTCATTTCGTCTAGTTCTTTCTTCTCAGTTTCGTTCTTTCTTCGCTTCGCTTTCTCTTCGATATTCGAAGTCCGCAGCTAGCTCCAAGCGATCCATGCAATGGCCTCCTCCGAGATTAACTGGGACAGGACTCTTCACGGGTGTTACAGCGGCACTCTACCCGGTTTCTGTTGTGAAAACTAGGCTGCAGGTTGCCTCAAAGGATACTTTGGAGAGAAGTGCGTTTTCTGTTGTGAAAGGTTTACTTAAAACGGATGGCATCCCTGGTTTGTATAAAGGGTTTGGTACAGTTATCATTGGAGCGATTCCTACCAGAATCATATTCCTCACTGCCTTAGAGACAACCAAGGTGGCTTCCTTCAGGGTGGTGGAGCCGTTTAGACTATCTGAAACTACTCAGGCTGCCATAGCAAATGGAATTGCAGGCATGGCATCATCATTTTTGTCACAAACTCTATTTGTTCCAATTGATGTGGTTAGCCAAAAGTTGATGGTGCAAGGATTATCAGGCCATGCCCAATATAGTGGGGGTTTGGATGTTGCTCGTAAGGTGTTAAGGTCTGATGGCATCAGGGGATTATATAGAGGATTTGGTCTATCTGTCATGACTTATGTACCATCTAATGTTGTATGGTGGGCAAGCTATGGTTCAAGTCAACGCTACTTATGGAGATTCTTGGGAGATAACAGTGAGGAATATACTCCTAGTCTACCAAAGATTATTTTTGCTCAGGCTACTGGAGGGATCATTGCTGGTGCTACTGCATCCTGCATTACAAACCCATTGGATACTATCAAGACACGATTACAGGTGCTGGGACTTGAAAAGAAAATCCCTGTAAAACAAGTTGTTAAAGATTTGATCGCTGAGGATGGTTGGAAAGGTGTATATAGAGGATTAGGTCCAAGACTTTTCAGCACGTCAGCATGGGGTACTTCAATGATATTGGCTTATGAATATCTGAAGCGCTTGTGTGCAAAAGATGGAGGAGGCAATTGATCTGTACACTGGCAGTCTTTTTCAAATTTGGAAAGAATATGCTCATAAATCACAATGGCAATTGAGCCCTAGATTTGCTGCTGGACATAATCAGATTTGCTGCTTAAAAGGTTTTGAACTTTAAGCAGACAGTTATGTTAACTGATTGTTCATCTAGGAAATAATCGTTGCATACATAGATATGGAATTTTTCGTATTAGAAAATTAGTTTCATTCTTTTCGATGATTAAATCGGATATAGGTGTATTCTTTTCCAACATTGTTATCGATAATGTACAATAGGAGGCAAAAAGTTACAATCAGATTTTTTTTTTCTGCCCACGCTAAATGTGTGCTTGTCTCAGATTTTTCTCCACCGACCGCGTATACTTTAGTGTTTAACCTTCAAAAATAC
Coding sequences of Glyma19g04190
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma19g04190.2 sequence type=CDS gene model=Glyma19g04190 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCCTCCTCCGAGATTAACTGGGACAGGCTAGATAAAAAGAAGTTCTTTGTTGTGGGAGCAGGACTCTTCACGGGTGTTACAGCGGCACTCTACCCGGTTTCTGTTGTGAAAACTAGGCTGCAGGTTGCCTCAAAGGATACTTTGGAGAGAAGTGCGTTTTCTGTTGTGAAAGGTTTACTTAAAACGGATGGCATCCCTGGTTTGTATAAAGGGTTTGGTACAGTTATCATTGGAGCGATTCCTACCAGAATCATATTCCTCACTGCCTTAGAGACAACCAAGGTGGCTTCCTTCAGGGTGGTGGAGCCGTTTAGACTATCTGAAACTACTCAGGCTGCCATAGCAAATGGAATTGCAGGCATGGCATCATCATTTTTGTCACAAACTCTATTTGTTCCAATTGATGTGGTTAGCCAAAAGTTGATGGTGCAAGGATTATCAGGCCATGCCCAATATAGTGGGGGTTTGGATGTTGCTCGTAAGGTGTTAAGGTCTGATGGCATCAGGGGATTATATAGAGGATTTGGTCTATCTGTCATGACTTATGTACCATCTAATGTTGTATGGTGGGCAAGCTATGGTTCAAGTCAACGCTACTTATGGAGATTCTTGGGAGATAACAGTGAGGAATATACTCCTAGTCTACCAAAGATTATTTTTGCTCAGGCTACTGGAGGGATCATTGCTGGTGCTACTGCATCCTGCATTACAAACCCATTGGATACTATCAAGACACGATTACAGGTGCTGGGACTTGAAAAGAAAATCCCTGTAAAACAAGTTGTTAAAGATTTGATCGCTGAGGATGGTTGGAAAGGTGTATATAGAGGATTAGGTCCAAGACTTTTCAGCACGTCAGCATGGGGTACTTCAATGATATTGGCTTATGAATATCTGAAGCGCTTGTGTGCAAAAGATGGAGGAGGCAATTGA
>Glyma19g04190.3 sequence type=CDS gene model=Glyma19g04190 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGCAATGGCCTCCTCCGAGATTAACTGGGACAGGACTCTTCACGGGTGTTACAGCGGCACTCTACCCGGTTTCTGTTGTGAAAACTAGGCTGCAGGTTGCCTCAAAGGATACTTTGGAGAGAAGTGCGTTTTCTGTTGTGAAAGGTTTACTTAAAACGGATGGCATCCCTGGTTTGTATAAAGGGTTTGGTACAGTTATCATTGGAGCGATTCCTACCAGAATCATATTCCTCACTGCCTTAGAGACAACCAAGGTGGCTTCCTTCAGGGTGGTGGAGCCGTTTAGACTATCTGAAACTACTCAGGCTGCCATAGCAAATGGAATTGCAGGCATGGCATCATCATTTTTGTCACAAACTCTATTTGTTCCAATTGATGTGGTTAGCCAAAAGTTGATGGTGCAAGGATTATCAGGCCATGCCCAATATAGTGGGGGTTTGGATGTTGCTCGTAAGGTGTTAAGGTCTGATGGCATCAGGGGATTATATAGAGGATTTGGTCTATCTGTCATGACTTATGTACCATCTAATGTTGTATGGTGGGCAAGCTATGGTTCAAGTCAACGCTACTTATGGAGATTCTTGGGAGATAACAGTGAGGAATATACTCCTAGTCTACCAAAGATTATTTTTGCTCAGGCTACTGGAGGGATCATTGCTGGTGCTACTGCATCCTGCATTACAAACCCATTGGATACTATCAAGACACGATTACAGGTGCTGGGACTTGAAAAGAAAATCCCTGTAAAACAAGTTGTTAAAGATTTGATCGCTGAGGATGGTTGGAAAGGTGTATATAGAGGATTAGGTCCAAGACTTTTCAGCACGTCAGCATGGGGTACTTCAATGATATTGGCTTATGAATATCTGAAGCGCTTGTGTGCAAAAGATGGAGGAGGCAATTGA
Predicted protein sequences of Glyma19g04190
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma19g04190.2 sequence type=predicted peptide gene model=Glyma19g04190 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MASSEINWDRLDKKKFFVVGAGLFTGVTAALYPVSVVKTRLQVASKDTLERSAFSVVKGLLKTDGIPGLYKGFGTVIIGAIPTRIIFLTALETTKVASFRVVEPFRLSETTQAAIANGIAGMASSFLSQTLFVPIDVVSQKLMVQGLSGHAQYSGGLDVARKVLRSDGIRGLYRGFGLSVMTYVPSNVVWWASYGSSQRYLWRFLGDNSEEYTPSLPKIIFAQATGGIIAGATASCITNPLDTIKTRLQVLGLEKKIPVKQVVKDLIAEDGWKGVYRGLGPRLFSTSAWGTSMILAYEYLKRLCAKDGGGN*
>Glyma19g04190.3 sequence type=predicted peptide gene model=Glyma19g04190 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MQWPPPRLTGTGLFTGVTAALYPVSVVKTRLQVASKDTLERSAFSVVKGLLKTDGIPGLYKGFGTVIIGAIPTRIIFLTALETTKVASFRVVEPFRLSETTQAAIANGIAGMASSFLSQTLFVPIDVVSQKLMVQGLSGHAQYSGGLDVARKVLRSDGIRGLYRGFGLSVMTYVPSNVVWWASYGSSQRYLWRFLGDNSEEYTPSLPKIIFAQATGGIIAGATASCITNPLDTIKTRLQVLGLEKKIPVKQVVKDLIAEDGWKGVYRGLGPRLFSTSAWGTSMILAYEYLKRLCAKDGGGN*