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Integrating Genetics and Genomics to Advance Soybean Research




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Report for Sequence Feature Glyma19g04190

Feature Type:gene_model
Chromosome:Gm19
Start:4269188
stop:4274819
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G15640AT Annotation by Michelle Graham. TAIR10: Mitochondrial substrate carrier family protein | chr5:5087590-5089677 FORWARD LENGTH=323 SoyBaseE_val: 5.00E-165ISS
GO:0006810GO-bp Annotation by Michelle Graham. GO Biological Process: transport SoyBaseN/AISS
GO:0006839GO-bp Annotation by Michelle Graham. GO Biological Process: mitochondrial transport SoyBaseN/AISS
GO:0055085GO-bp Annotation by Michelle Graham. GO Biological Process: transmembrane transport SoyBaseN/AISS
GO:0005739GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion SoyBaseN/AISS
GO:0005743GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrial inner membrane SoyBaseN/AISS
KOG0765 KOG Predicted mitochondrial carrier protein JGI ISS
PTHR24089Panther FAMILY NOT NAMED JGI ISS
PTHR24089:SF94Panther SUBFAMILY NOT NAMED JGI ISS
PF00153PFAM Mitochondrial carrier protein JGI ISS
UniRef100_B9SYD0UniRef Annotation by Michelle Graham. Most informative UniRef hit: Mitochondrial carnitine/acylcarnitine carrier protein, putative n=1 Tax=Ricinus communis RepID=B9SYD0_RICCO SoyBaseE_val: 1.00E-164ISS
UniRef100_UPI000233E063UniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233E063 related cluster n=1 Tax=unknown RepID=UPI000233E063 SoyBaseE_val: 0ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma19g04190 not represented in the dataset

Glyma19g04190 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma13g06650 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.19g033300 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma19g04190.3   sequence type=transcript   gene model=Glyma19g04190   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTTAAATACAGAAGGTTCTTTGCTTTCATTTCTTGAGTTTCATTTCGTCTAGTTCTTTCTTCTCAGTTTCGTTCTTTCTTCGCTTCGCTTTCTCTTCGATATTCGAAGTCCGCAGCTAGCTCCAAGCGATCCATGCAATGGCCTCCTCCGAGATTAACTGGGACAGGACTCTTCACGGGTGTTACAGCGGCACTCTACCCGGTTTCTGTTGTGAAAACTAGGCTGCAGGTTGCCTCAAAGGATACTTTGGAGAGAAGTGCGTTTTCTGTTGTGAAAGGTTTACTTAAAACGGATGGCATCCCTGGTTTGTATAAAGGGTTTGGTACAGTTATCATTGGAGCGATTCCTACCAGAATCATATTCCTCACTGCCTTAGAGACAACCAAGGTGGCTTCCTTCAGGGTGGTGGAGCCGTTTAGACTATCTGAAACTACTCAGGCTGCCATAGCAAATGGAATTGCAGGCATGGCATCATCATTTTTGTCACAAACTCTATTTGTTCCAATTGATGTGGTTAGCCAAAAGTTGATGGTGCAAGGATTATCAGGCCATGCCCAATATAGTGGGGGTTTGGATGTTGCTCGTAAGGTGTTAAGGTCTGATGGCATCAGGGGATTATATAGAGGATTTGGTCTATCTGTCATGACTTATGTACCATCTAATGTTGTATGGTGGGCAAGCTATGGTTCAAGTCAACGCTACTTATGGAGATTCTTGGGAGATAACAGTGAGGAATATACTCCTAGTCTACCAAAGATTATTTTTGCTCAGGCTACTGGAGGGATCATTGCTGGTGCTACTGCATCCTGCATTACAAACCCATTGGATACTATCAAGACACGATTACAGGTGCTGGGACTTGAAAAGAAAATCCCTGTAAAACAAGTTGTTAAAGATTTGATCGCTGAGGATGGTTGGAAAGGTGTATATAGAGGATTAGGTCCAAGACTTTTCAGCACGTCAGCATGGGGTACTTCAATGATATTGGCTTATGAATATCTGAAGCGCTTGTGTGCAAAAGATGGAGGAGGCAATTGATCTGTACACTGGCAGTCTTTTTCAAATTTGGAAAGAATATGCTCATAAATCACAATGGCAATTGAGCCCTAGATTTGCTGCTGGACATAATCAGATTTGCTGCTTAAAAGGTTTTGAACTTTAAGCAGACAGTTATGTTAACTGATTGTTCATCTAGGAAATAATCGTTGCATACATAGATATGGAATTTTTCGTATTAGAAAATTAGTTTCATTCTTTTCGATGATTAAATCGGATATAGGTGTATTCTTTTCCAACATTGTTATCGATAATGTACAATAGGAGGCAAAAAGTTACAATCAGATTTTTTTTTTCTGCCCACGCTAAATGTGTGCTTGTCTCAGATTTTTCTCCACCGACCGCGTATACTTTAGTGTTTAACCTTCAAAAATAC

>Glyma19g04190.2   sequence type=CDS   gene model=Glyma19g04190   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCTCCTCCGAGATTAACTGGGACAGGCTAGATAAAAAGAAGTTCTTTGTTGTGGGAGCAGGACTCTTCACGGGTGTTACAGCGGCACTCTACCCGGTTTCTGTTGTGAAAACTAGGCTGCAGGTTGCCTCAAAGGATACTTTGGAGAGAAGTGCGTTTTCTGTTGTGAAAGGTTTACTTAAAACGGATGGCATCCCTGGTTTGTATAAAGGGTTTGGTACAGTTATCATTGGAGCGATTCCTACCAGAATCATATTCCTCACTGCCTTAGAGACAACCAAGGTGGCTTCCTTCAGGGTGGTGGAGCCGTTTAGACTATCTGAAACTACTCAGGCTGCCATAGCAAATGGAATTGCAGGCATGGCATCATCATTTTTGTCACAAACTCTATTTGTTCCAATTGATGTGGTTAGCCAAAAGTTGATGGTGCAAGGATTATCAGGCCATGCCCAATATAGTGGGGGTTTGGATGTTGCTCGTAAGGTGTTAAGGTCTGATGGCATCAGGGGATTATATAGAGGATTTGGTCTATCTGTCATGACTTATGTACCATCTAATGTTGTATGGTGGGCAAGCTATGGTTCAAGTCAACGCTACTTATGGAGATTCTTGGGAGATAACAGTGAGGAATATACTCCTAGTCTACCAAAGATTATTTTTGCTCAGGCTACTGGAGGGATCATTGCTGGTGCTACTGCATCCTGCATTACAAACCCATTGGATACTATCAAGACACGATTACAGGTGCTGGGACTTGAAAAGAAAATCCCTGTAAAACAAGTTGTTAAAGATTTGATCGCTGAGGATGGTTGGAAAGGTGTATATAGAGGATTAGGTCCAAGACTTTTCAGCACGTCAGCATGGGGTACTTCAATGATATTGGCTTATGAATATCTGAAGCGCTTGTGTGCAAAAGATGGAGGAGGCAATTGA

>Glyma19g04190.3   sequence type=CDS   gene model=Glyma19g04190   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCAATGGCCTCCTCCGAGATTAACTGGGACAGGACTCTTCACGGGTGTTACAGCGGCACTCTACCCGGTTTCTGTTGTGAAAACTAGGCTGCAGGTTGCCTCAAAGGATACTTTGGAGAGAAGTGCGTTTTCTGTTGTGAAAGGTTTACTTAAAACGGATGGCATCCCTGGTTTGTATAAAGGGTTTGGTACAGTTATCATTGGAGCGATTCCTACCAGAATCATATTCCTCACTGCCTTAGAGACAACCAAGGTGGCTTCCTTCAGGGTGGTGGAGCCGTTTAGACTATCTGAAACTACTCAGGCTGCCATAGCAAATGGAATTGCAGGCATGGCATCATCATTTTTGTCACAAACTCTATTTGTTCCAATTGATGTGGTTAGCCAAAAGTTGATGGTGCAAGGATTATCAGGCCATGCCCAATATAGTGGGGGTTTGGATGTTGCTCGTAAGGTGTTAAGGTCTGATGGCATCAGGGGATTATATAGAGGATTTGGTCTATCTGTCATGACTTATGTACCATCTAATGTTGTATGGTGGGCAAGCTATGGTTCAAGTCAACGCTACTTATGGAGATTCTTGGGAGATAACAGTGAGGAATATACTCCTAGTCTACCAAAGATTATTTTTGCTCAGGCTACTGGAGGGATCATTGCTGGTGCTACTGCATCCTGCATTACAAACCCATTGGATACTATCAAGACACGATTACAGGTGCTGGGACTTGAAAAGAAAATCCCTGTAAAACAAGTTGTTAAAGATTTGATCGCTGAGGATGGTTGGAAAGGTGTATATAGAGGATTAGGTCCAAGACTTTTCAGCACGTCAGCATGGGGTACTTCAATGATATTGGCTTATGAATATCTGAAGCGCTTGTGTGCAAAAGATGGAGGAGGCAATTGA

>Glyma19g04190.2   sequence type=predicted peptide   gene model=Glyma19g04190   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASSEINWDRLDKKKFFVVGAGLFTGVTAALYPVSVVKTRLQVASKDTLERSAFSVVKGLLKTDGIPGLYKGFGTVIIGAIPTRIIFLTALETTKVASFRVVEPFRLSETTQAAIANGIAGMASSFLSQTLFVPIDVVSQKLMVQGLSGHAQYSGGLDVARKVLRSDGIRGLYRGFGLSVMTYVPSNVVWWASYGSSQRYLWRFLGDNSEEYTPSLPKIIFAQATGGIIAGATASCITNPLDTIKTRLQVLGLEKKIPVKQVVKDLIAEDGWKGVYRGLGPRLFSTSAWGTSMILAYEYLKRLCAKDGGGN*

>Glyma19g04190.3   sequence type=predicted peptide   gene model=Glyma19g04190   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MQWPPPRLTGTGLFTGVTAALYPVSVVKTRLQVASKDTLERSAFSVVKGLLKTDGIPGLYKGFGTVIIGAIPTRIIFLTALETTKVASFRVVEPFRLSETTQAAIANGIAGMASSFLSQTLFVPIDVVSQKLMVQGLSGHAQYSGGLDVARKVLRSDGIRGLYRGFGLSVMTYVPSNVVWWASYGSSQRYLWRFLGDNSEEYTPSLPKIIFAQATGGIIAGATASCITNPLDTIKTRLQVLGLEKKIPVKQVVKDLIAEDGWKGVYRGLGPRLFSTSAWGTSMILAYEYLKRLCAKDGGGN*







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