Glyma19g04180 - SoyBase

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Report for Sequence Feature Glyma19g04180

Feature Type:	gene_model
Chromosome:	Gm19
Start:	4266148
stop:	4268637
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g04180

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G02220	AT	Annotation by Michelle Graham. TAIR10: unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2039 (InterPro:IPR019351); Has 215 Blast hits to 215 proteins in 94 species: Archae - 2; Bacteria - 2; Metazoa - 125; Fungi - 4; Plants - 38; Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink). \| chr3:412210-413536 REVERSE LENGTH=227	SoyBase	E_val: 2.00E-85	ISS
GO:0000398	GO-bp	Annotation by Michelle Graham. GO Biological Process: mRNA splicing, via spliceosome	SoyBase	N/A	ISS
GO:0001510	GO-bp	Annotation by Michelle Graham. GO Biological Process: RNA methylation	SoyBase	N/A	ISS
GO:0006333	GO-bp	Annotation by Michelle Graham. GO Biological Process: chromatin assembly or disassembly	SoyBase	N/A	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
KOG3241	KOG	Uncharacterized conserved protein	JGI		ISS
PTHR22876	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR22876:SF1	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF10217	PFAM	Uncharacterized conserved protein (DUF2039)	JGI		ISS
UniRef100_I1N6E0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N6E0_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q16RH5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: AAEL010954-PA n=1 Tax=Aedes aegypti RepID=Q16RH5_AEDAE	SoyBase	E_val: 5.00E-23	ISS

Expression Patterns of Glyma19g04180

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g04180

Paralog	Evidence	Comments
Glyma13g06640	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g04180 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g033200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g04180

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma19g04180

Limit To All Plant Sequences

>Glyma19g04180.2   sequence type=transcript   gene model=Glyma19g04180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATAGTTTATACATGTAAGTACCATCAGTGATTACCTCAGTAAACATGCAATTAGCCAATTACCCCCACTAAACATGTTTTTAGCCGCAGTTAAAAAGTGATTAGTGGTTCAGGAATGTCTAATAGTAAACGCCGCTTGTGAATAGCAGAAAGAAGCAGTTGTAGTTGTTGCAAAGATGAGTAGTAGCGGCGCCAAGAGGAGCGGTCCCCCAAAGCACCAGAACAAGTACGCTTGGAAACCCAACGCTGGTCGCAAAATCAACGAAACTGAAGTTGGAGGAAGATTCAGACCCCTCTCTGAGATCACTGGGGTGTGCCCTCGTTGCAAGGATCAAATCGAATGGAAACGACGTTATGGAAAGTACAAGCCTCTTCTTCAACCAGCCAAATGTCAGAGATGTTCCAAGCGTGCTGTACGTCAAGCTTACCATAGCTTGTGTCCTGGTTGTGCCAAGGAGCATGGTGTATGCGCAAAGTGTTGTTGCAATACGAAGCAAATAGTTGGAAGGGATATATCAGAAGTTGAGGCTGAGCAAAAGATGCTAGAGGAGGCCATTAAGAACTCTCGGGAGAGAGAAAGGAGATCCTTATTGCGTGCTATGAACAAAGACAAAACTAAGAGTTCAAATAGTGTCCCAACAGATACTAAAGATAACGAGGGTGAAGTTTGTGAAGATGAAGATAACAGTGATGATGAAGATAACAGTGATAATGAAGATTGTGATGAAGATGGTAACAGTGAGAATGAAGATTGTGATGATGAAGATGGTAACAATGAGAACGAAGATTGTGATGAGAATGATGACAAAAATGATGAAAACATTCCTGATCATACCAATGCCAAAAATGAATGATTCAGGACATGAGTATTTCAGTTTCCTTTAGAAGTTCAAATTACAATTCTGATTTCTTTGCAGACTGTTTTCGGCGTATTTGGGGTTGAATGCAAATTTTGGTTAAGTTGTATCTTTAGTTTGTTCGCCTATGGGTGGGTGCCTCTTGTTTCATTGTATTTAACTTTTGAAGTATAATCTTTGTTATTAATTTTTTATCCACTCAATGCTACCTGATTCCTGCTCTGTTCTGCCGAGCATGCCCATCAGTTTATTATTAAGTTATTAGCTTCATTTTGAGCCACATGGATCTACTTACCGAACCC

Coding sequences of Glyma19g04180

Limit To All Plant Sequences

>Glyma19g04180.1   sequence type=CDS   gene model=Glyma19g04180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGTAGTAGCGGCGCCAAGAGGAGCGGTCCCCCAAAGCACCAGAACAAGTACGCTTGGAAACCCAACGCTGGTCGCAAAATCAACGAAACTGAAGTTGGAGGAAGATTCAGACCCCTCTCTGAGATCACTGGGGTGTGCCCTCGTTGCAAGGATCAAATCGAATGGAAACGACGTTATGGAAAGTACAAGCCTCTTCTTCAACCAGCCAAATGTCAGAGATGTTCCAAGCGTGCTGTACGTCAAGCTTACCATAGCTTGTGTCCTGGTTGTGCCAAGGAGCATGGTGTATGCGCAAAGTGTTGTTGCAATACGAAGCAAATAGTTGGAAGGGATATATCAGAAGTTGAGGCTGAGCAAAAGATGCTAGAGGAGGCCATTAAGAACTCTCGGGAGAGAGAAAGGAGATCCTTATTGCGTGCTATGAACAAAGACAAAACTAAGAGTTCAAATAGTGTCCCAACAGATACTAAAGGTAACAAAGTTGGACAATTATTTCCAAATGCATCACTCGAAGACTATGCCATACTGAATAGAGTAAACGTGGAGCATGATGATGGTGCAATTTGTAATGATAAATATGTAGATAACGAGGGTGAAGTTTGTGAAGATGAAGATAACAGTGATGATGAAGATAACAGTGATAATGAAGATTGTGATGAAGATGGTAACAGTGAGAATGAAGATTGTGATGATGAAGATGGTAACAATGAGAACGAAGATTGTGATGAGAATGATGACAAAAATGATGAAAACATTCCTGATCATACCAATGCCAAAAATGAATGA

>Glyma19g04180.2   sequence type=CDS   gene model=Glyma19g04180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGTAGTAGCGGCGCCAAGAGGAGCGGTCCCCCAAAGCACCAGAACAAGTACGCTTGGAAACCCAACGCTGGTCGCAAAATCAACGAAACTGAAGTTGGAGGAAGATTCAGACCCCTCTCTGAGATCACTGGGGTGTGCCCTCGTTGCAAGGATCAAATCGAATGGAAACGACGTTATGGAAAGTACAAGCCTCTTCTTCAACCAGCCAAATGTCAGAGATGTTCCAAGCGTGCTGTACGTCAAGCTTACCATAGCTTGTGTCCTGGTTGTGCCAAGGAGCATGGTGTATGCGCAAAGTGTTGTTGCAATACGAAGCAAATAGTTGGAAGGGATATATCAGAAGTTGAGGCTGAGCAAAAGATGCTAGAGGAGGCCATTAAGAACTCTCGGGAGAGAGAAAGGAGATCCTTATTGCGTGCTATGAACAAAGACAAAACTAAGAGTTCAAATAGTGTCCCAACAGATACTAAAGATAACGAGGGTGAAGTTTGTGAAGATGAAGATAACAGTGATGATGAAGATAACAGTGATAATGAAGATTGTGATGAAGATGGTAACAGTGAGAATGAAGATTGTGATGATGAAGATGGTAACAATGAGAACGAAGATTGTGATGAGAATGATGACAAAAATGATGAAAACATTCCTGATCATACCAATGCCAAAAATGAATGA

Predicted protein sequences of Glyma19g04180

Limit To All Plant Sequences

>Glyma19g04180.1   sequence type=predicted peptide   gene model=Glyma19g04180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSSSGAKRSGPPKHQNKYAWKPNAGRKINETEVGGRFRPLSEITGVCPRCKDQIEWKRRYGKYKPLLQPAKCQRCSKRAVRQAYHSLCPGCAKEHGVCAKCCCNTKQIVGRDISEVEAEQKMLEEAIKNSRERERRSLLRAMNKDKTKSSNSVPTDTKGNKVGQLFPNASLEDYAILNRVNVEHDDGAICNDKYVDNEGEVCEDEDNSDDEDNSDNEDCDEDGNSENEDCDDEDGNNENEDCDENDDKNDENIPDHTNAKNE*

>Glyma19g04180.2   sequence type=predicted peptide   gene model=Glyma19g04180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSSSGAKRSGPPKHQNKYAWKPNAGRKINETEVGGRFRPLSEITGVCPRCKDQIEWKRRYGKYKPLLQPAKCQRCSKRAVRQAYHSLCPGCAKEHGVCAKCCCNTKQIVGRDISEVEAEQKMLEEAIKNSRERERRSLLRAMNKDKTKSSNSVPTDTKDNEGEVCEDEDNSDDEDNSDNEDCDEDGNSENEDCDDEDGNNENEDCDENDDKNDENIPDHTNAKNE*

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