Glyma19g04140 - SoyBase

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Report for Sequence Feature Glyma19g04140

Feature Type:	gene_model
Chromosome:	Gm19
Start:	4238732
stop:	4242162
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g04140

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G51550	AT	Annotation by Michelle Graham. TAIR10: Malectin/receptor-like protein kinase family protein \| chr3:19117877-19120564 REVERSE LENGTH=895	SoyBase	E_val: 0	ISS
GO:0000902	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell morphogenesis	SoyBase	N/A	ISS
GO:0006007	GO-bp	Annotation by Michelle Graham. GO Biological Process: glucose catabolic process	SoyBase	N/A	ISS
GO:0006096	GO-bp	Annotation by Michelle Graham. GO Biological Process: glycolysis	SoyBase	N/A	ISS
GO:0006468	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein phosphorylation	SoyBase	N/A	ISS
GO:0006833	GO-bp	Annotation by Michelle Graham. GO Biological Process: water transport	SoyBase	N/A	ISS
GO:0006972	GO-bp	Annotation by Michelle Graham. GO Biological Process: hyperosmotic response	SoyBase	N/A	ISS
GO:0007030	GO-bp	Annotation by Michelle Graham. GO Biological Process: Golgi organization	SoyBase	N/A	ISS
GO:0009266	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to temperature stimulus	SoyBase	N/A	ISS
GO:0009651	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to salt stress	SoyBase	N/A	ISS
GO:0009791	GO-bp	Annotation by Michelle Graham. GO Biological Process: post-embryonic development	SoyBase	N/A	ISS
GO:0010193	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to ozone	SoyBase	N/A	ISS
GO:0010483	GO-bp	Annotation by Michelle Graham. GO Biological Process: pollen tube reception	SoyBase	N/A	ISS
GO:0016049	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell growth	SoyBase	N/A	ISS
GO:0030244	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellulose biosynthetic process	SoyBase	N/A	ISS
GO:0046686	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cadmium ion	SoyBase	N/A	ISS
GO:0046777	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein autophosphorylation	SoyBase	N/A	ISS
GO:0048193	GO-bp	Annotation by Michelle Graham. GO Biological Process: Golgi vesicle transport	SoyBase	N/A	ISS
GO:0048767	GO-bp	Annotation by Michelle Graham. GO Biological Process: root hair elongation	SoyBase	N/A	ISS
GO:0050832	GO-bp	Annotation by Michelle Graham. GO Biological Process: defense response to fungus	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0009506	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0043680	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: filiform apparatus	SoyBase	N/A	ISS
GO:0004672	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein kinase activity	SoyBase	N/A	ISS
GO:0004674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0016301	GO-mf	Annotation by Michelle Graham. GO Molecular Function: kinase activity	SoyBase	N/A	ISS
GO:0016772	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups	SoyBase	N/A	ISS
KOG1187	KOG	Serine/threonine protein kinase	JGI		ISS
PTHR24420	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24420:SF418	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF07714	PFAM	Protein tyrosine kinase	JGI		ISS
PF11721	PFAM	Di-glucose binding within endoplasmic reticulum	JGI		ISS
UniRef100_C6ZRM1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Receptor-like kinase n=2 Tax=Glycine max RepID=C6ZRM1_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_C6ZRM1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Receptor-like kinase n=2 Tax=Glycine max RepID=C6ZRM1_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma19g04140

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g04140

Paralog	Evidence	Comments
Glyma13g06530	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g04140 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g033100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g04140

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma19g04140

Limit To All Plant Sequences

>Glyma19g04140.1   sequence type=CDS   gene model=Glyma19g04140   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGGTTCCTCAGTATCAACTCTGTAGCATTATTCCTCTTTCTCCTCTTCTCCACACACATCCAAGCGTACACTCCGGAAGACAACTTCAGCATCAGTTGCGGCACCACCGGGACATCCTTCGACGGTGAAAGGACATGGACAGGGGACATACACAAAAAGTACTTATCTGGTGGTCAAGATGACACCGTTTCAACTGAAGCAACAACACAATCTCCTTCTGTCAAACAAGTCCCCTACACCTCAGTACGCTTGTCTCGTTCTCAATTCAATTACTCCTTCCCCGTCACCGCTGGCCCCAAATTTGTTCGCCTCTTCTTCTATCCTGCCGACTACCCCTCCTTTCCTCGCACTGATGCCTCTTTCACCGTTCAATCCAACCAATTCACCCTCTTAAAAGGTTTTAACACCTCTCTAAATGCGGATGCAGGAAAAACGGAAACCATCTTCGGAGAATATGTGGTCAACGTCAACGATGGTGGGATTCTGCTCCTTAGCTTCACTCCGTCGAAACCATACTCCTACGCTTTCATCAATGGAATTGAGGTACTTTCCATGCCAACTGATCTTTATTACACATCAGCGACAGTGGATGCAGTTGGATTCAAGTTCGTGGGAAGAAACATGCAGTACACCCTCAGAACCAGCTTTGCCTTGCAAACAGAGTATAGAATCAAAGCCGGAGGGCAAGAAATCTCTGCACAAAACGACACCGGTTTGTTGAGGAAATGGGCTGGTGATGAACAAGATTATTTAATTAAGCAAAATCCAGAGAATAATGATCTACCAGCTAACACGGATGGAAAGATGAACATAACGGTGAATCCTGATCATGTGGCACCCAAGGAACTATACAGAACAGCGCGTAACATGGGCACAAACACCACTCTGAACATAATCAGCAACCTGACTTGGGAGTTCCCCGTTGACTCTGGTTTTACTTACATGATCAGGCTCCACTTTTGCGAGCTCGATCCAAATATTAGTGACATCAAGGACAGGGTGTTCTTAATTTACATAGCGAGCCAGTTGGCAGAAGACAATGCTGATGTTATGGAATGGACCCAGAAACAGAAAGGTCTCCCTGTGCATCAAAACTATGCGGTTTTGATTCCCAAGAATAATAATCAGAAAAAGGTTAATCTGTTGCTCCAAATGCATCCTCAAACTGATGATAAAACATTATATAGAGATGCGTTCTTGAACGGTCTCGAGATATTCAAAATCAGCGAAGCCAAGTCAAACAACCTTGCTGGACCTAATCCAGACCCAGTTCTGACTCCACACAACAACATACCCGCCCCAAAGGGAAACAGCAGCAGCGGGAGCCAAATGACCATAATTGGTGTCATTGCAGGGTTGGTATCTGGGGTTGTTTTGATATCCGTTGTCATTCTTTTTGTTGTAATTTTGTGGCGCAAGAGAACCACTGCTATGAAGACCAAGGATAGGTCAACCAACAAGCAGAACTACTCTCTGCCATCCGATCTCTGCCGCCGCTTCTCCCTCATCGAGATCAAAGCCGCCACCCAAAACTTTGACGAAGTCTTCATCATCGGCGTGGGAGGATTCGGCCATGTCTACAAGGGCTACATCGATGACAGTTTTACCCCCGTTGCCATCAAGCGCCTCAAACCGGGTTCACAGCAAGGGGCACGTGAGTTTTTGAATGAAATCGACATGCTTTCGCAACTCCGTCACCTCAATCTCGTCTCTCTCATCGGCTACTGCAACGATAATAAGGAAATGATCTTGGTCTATGATTTCGTGAGACGTGGCAATCTACGTGACCATCTCTACAACACCGATAAGCCCCCTCTCTCGTGGAAGCAACGGTTGCAGATTTGCATTGGGGCAGCGCTTGGGCTGGATTATCTTCACACAGGCGCGAAACACATGATCATCCACCGTGATGTAAAAACCACCAATATCTTATTGGATGATAAATGGGTGGTCAAGGTTTCAGACTTTGGGCTTTCCAGAATTGGACCCACGGGCGTGGACAAGTCTCATGTCAGCACTGTTGTGAGGGGAAGCTTTGGGTATTTAGACCCGGAATATTACAAACGCTACCGTTTGACAGAGAAGTCTGATGTGTACTCTTTTGGTGTAGTGTTGTTTGAGATACTGTGCGCTCGGCCACCTCTAATCCATAGTGCACAGATAGAACAGGTGTCACTTGCTAATTGGGTGAGGTGCTGTAACCAAAGTGGGACTATGTCTCGGATTGTGGACCCCACATTGAAGGGGAAGATCGCGCCTGAGTGCTTTAAGAAGTTTTGTGAGACTGGAATGAGTTGTTTGTTAGAGGATGGGAGGCAGAGGCCATCGATGAACGACGTCGTTTGGATGCTGGAGTTTGCACTCCAGCTACAAGAGAGTGCAGAGCAACGCGAAAATGATGGTATTGTTATTACTGAAGAAGTTAATGAGAAAAGAGAGGAAATTAGTGATGATACGTTTAATATTAACAAGAGTAGTAGTGCAGTGAGTGTGAATGTGAGTACAAGTAGTTCCAGCGAAGAGCATAGCTATGCAGGGATTGATATACTTGCTTGGTTGAGGGGCATGGGCAAAAACAAATTGTAA

Predicted protein sequences of Glyma19g04140

Limit To All Plant Sequences

>Glyma19g04140.1   sequence type=predicted peptide   gene model=Glyma19g04140   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRFLSINSVALFLFLLFSTHIQAYTPEDNFSISCGTTGTSFDGERTWTGDIHKKYLSGGQDDTVSTEATTQSPSVKQVPYTSVRLSRSQFNYSFPVTAGPKFVRLFFYPADYPSFPRTDASFTVQSNQFTLLKGFNTSLNADAGKTETIFGEYVVNVNDGGILLLSFTPSKPYSYAFINGIEVLSMPTDLYYTSATVDAVGFKFVGRNMQYTLRTSFALQTEYRIKAGGQEISAQNDTGLLRKWAGDEQDYLIKQNPENNDLPANTDGKMNITVNPDHVAPKELYRTARNMGTNTTLNIISNLTWEFPVDSGFTYMIRLHFCELDPNISDIKDRVFLIYIASQLAEDNADVMEWTQKQKGLPVHQNYAVLIPKNNNQKKVNLLLQMHPQTDDKTLYRDAFLNGLEIFKISEAKSNNLAGPNPDPVLTPHNNIPAPKGNSSSGSQMTIIGVIAGLVSGVVLISVVILFVVILWRKRTTAMKTKDRSTNKQNYSLPSDLCRRFSLIEIKAATQNFDEVFIIGVGGFGHVYKGYIDDSFTPVAIKRLKPGSQQGAREFLNEIDMLSQLRHLNLVSLIGYCNDNKEMILVYDFVRRGNLRDHLYNTDKPPLSWKQRLQICIGAALGLDYLHTGAKHMIIHRDVKTTNILLDDKWVVKVSDFGLSRIGPTGVDKSHVSTVVRGSFGYLDPEYYKRYRLTEKSDVYSFGVVLFEILCARPPLIHSAQIEQVSLANWVRCCNQSGTMSRIVDPTLKGKIAPECFKKFCETGMSCLLEDGRQRPSMNDVVWMLEFALQLQESAEQRENDGIVITEEVNEKREEISDDTFNINKSSSAVSVNVSTSSSSEEHSYAGIDILAWLRGMGKNKL*

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