SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G13680 | AT | Annotation by Michelle Graham. TAIR10: PLC-like phosphodiesterases superfamily protein | chr1:4690409-4692702 FORWARD LENGTH=346 | SoyBase | E_val: 6.00E-158 | ISS |
| GO:0006629 | GO-bp | Annotation by Michelle Graham. GO Biological Process: lipid metabolic process | SoyBase | N/A | ISS |
| GO:0010048 | GO-bp | Annotation by Michelle Graham. GO Biological Process: vernalization response | SoyBase | N/A | ISS |
| GO:0035556 | GO-bp | Annotation by Michelle Graham. GO Biological Process: intracellular signal transduction | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0004629 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: phospholipase C activity | SoyBase | N/A | ISS |
| GO:0008081 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: phosphoric diester hydrolase activity | SoyBase | N/A | ISS |
| UniRef100_B9SYD4 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Phospholipase C, putative n=1 Tax=Ricinus communis RepID=B9SYD4_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233E060 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233E060 related cluster n=1 Tax=unknown RepID=UPI000233E060 | SoyBase | E_val: 0 | ISS |
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Glyma19g04084 not represented in the dataset |
Glyma19g04084 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.19g032900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma19g04084.2 sequence type=transcript gene model=Glyma19g04084 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GGAAACCTTTCACACTCTCGTTAGTCAAGTACAACAATTATTATTTTTTAATTGCTTTCGTTTCCAAATAATTAATGCAGCATAACATAACCATTAACCGCTTTCCCTTTTGGCAGCACTTGAGAATTGAGAACTCCACGAGATCCTTTCTTTTCCTCAGCCAAAACACAAAACCAAAACAGAAACCTTTTGATATAAATTATACTTCTTATTGTGGTTCTCTTCCCTTTCTGTTATTCACTTCCTTTTAGACACCACACTAATCCAGATTAGACATTGTACAAATGGGTTCTCTGTTGTTCTTGCTTTTGGTTATTGTTCTTCCATTGTGTTATTGTGTTGATGCTGCTTGCTCTAATGGAAACTGCAAGGTAAATGATGAGTGCTCGTCTAATGGTGATTGTGGAGCCGGTCTCTATTGCTTCTCATGCCCACTTGGATATTTAGGCTCTAGGTGTGTGAGATCTTCCATCACAGATCAATTCAAGCTCACAAATAACTCTCTACCATTCAACAAATATGCATTTTTGACAACGCACAATGCGTTTGCCATTGATGGAGAGCCATCACACACAGGAGTGCCTCGAGCTACCATCACTAACCAAGCAGACAGTGTAACAGAGCAGCTCAAAGAACCCGCTATAGATACACTGAAGGAAATTGAAGCTTTTCTATCAGCCAACCCAGCAGAAATTGTCACACTCATATTGGAAGATTATGTTAAAACACCAAAAGGATTGACGAAAGTCTTCGCCAAAGCTGGTTTGATGAAGTTTTGGTTTCCTGTGACTCGAATGCCAAAAAGAGGAGGAGATTGGCCTCTAGTGAGTGATATGATTGCTAAAAATCAAAGATTACTAGTGTTCACTTCGGTCAGGTCTAAGGAACAAAGTGAAGGCATTGCATACCAGTGGAATTACATGGTTGAAAATCAGTATGGGGATGGAGGAAGGAAAGCAGGAAGTTGTCCACACAGAGCAGAATCTTCTCCTCTTGATGACAAGAGCAAGTCCTTAGTGTTGGTAAACTATTTCCGCTCTACGCCATTTAAGCCTATTGCATGTGAAGATAACTCTGGAGGACTCATTGACATGCTACAAACCTGTCATGGTGCTGCTGCCAACAGGTGGGCTAATTATCTTGCTGTTGATTATTACAAGAGGAGTGAAGGAGGAGGTTCGTTTCAAGCCGTGGACACTCTGAATGGGAAGCTCTTGTGTGGTTGTAATGATGTGCATGCGTGTGTGCCTGGATCTACTTCACAAGCTTGCTCAGCATAGAAAGCATAGCAACGAGCTTCTTGAAATGTTTCATCCCACGCTTCCTGGTTCTGAATACCATATTTTATGCAGCCACAGGGTTACCAAATGTATTTGATTGACAACTATGAATGCGTTGGTTATAGTTAATAGAACATGTTTAAATTTGTAAGCGAAAATCATAGGAAACCTTCGGTGTTTCAATATGAAGATGCTTCTTTTGGGCAGATTACAACCAAATTAGGTGCTATGTGACTCCCTATAAATTTGTTTAGCAATTTAGAACGAAGCTGCTTTTGTTAGCAGTTCCAAAATTTGTATTTGTGGTCATTACATGGAAAAACTGTTGAGTCGTGTTTTGCATGAAAGCTTTAATACGCTTTTCAAAAAAACAAAAGTAGCAATGTAGCATATAAGCTGATATAAAAAATGTTGAAATTTATGACTTACGAAGTTGTTTTTTAAAAA
>Glyma19g04084.1 sequence type=CDS gene model=Glyma19g04084 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGTTCTCTGTTGTTCTTGCTTTTGGTTATTGTTCTTCCATTGTGTTATTGTGTTGATGCTGCTTGCTCTAATGGAAACTGCAAGGTAAATGATGAGTGCTCGTCTAATGGTGATTGTGGAGCCGGTCTCTATTGCTTCTCATGCCCACTTGGATATTTAGGCTCTAGGTGTGTGAGATCTTCCATCACAGATCAATTCAAGCTCACAAATAACTCTCTACCATTCAACAAATATGCATTTTTGACAACGCACAATGCGTTTGCCATTGATGGAGAGCCATCACACACAGGAGTGCCTCGAGCTACCATCACTAACCAAGCAGACAGTGTAACAGAGCAGCTCAAAAATGGAGTTAGGGCACTAATGCTAGATACATATGATTTTCGTGGAGACGTGTGGTTATGTCATTCATTTCAAGGCCAGTGCTATGACTTCACAGCTTTTGAACCCGCTATAGATACACTGAAGGAAATTGAAGCTTTTCTATCAGCCAACCCAGCAGAAATTGTCACACTCATATTGGAAGATTATGTTAAAACACCAAAAGGATTGACGAAAGTCTTCGCCAAAGCTGGTTTGATGAAGTTTTGGTTTCCTGTGACTCGAATGCCAAAAAGAGGAGGAGATTGGCCTCTAGTGAGTGATATGATTGCTAAAAATCAAAGATTACTAGTGTTCACTTCGGTCAGGTCTAAGGAACAAAGTGAAGGCATTGCATACCAGTGGAATTACATGGTTGAAAATCAGTATGGGGATGGAGGAAGGAAAGCAGGAAGTTGTCCACACAGAGCAGAATCTTCTCCTCTTGATGACAAGAGCAAGTCCTTAGTGTTGGTAAACTATTTCCGCTCTACGCCATTTAAGCCTATTGCATGTGAAGATAACTCTGGAGGACTCATTGACATGCTACAAACCTGTCATGGTGCTGCTGCCAACAGGTGGGCTAATTATCTTGCTGTTGATTATTACAAGAGGAGTGAAGGAGGAGGTTCGTTTCAAGCCGTGGACACTCTGAATGGGAAGCTCTTGTGTGGTTGTAATGATGTGCATGCGTGTGTGCCTGGATCTACTTCACAAGCTTGCTCAGCATAG >Glyma19g04084.2 sequence type=CDS gene model=Glyma19g04084 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGTTCTCTGTTGTTCTTGCTTTTGGTTATTGTTCTTCCATTGTGTTATTGTGTTGATGCTGCTTGCTCTAATGGAAACTGCAAGGTAAATGATGAGTGCTCGTCTAATGGTGATTGTGGAGCCGGTCTCTATTGCTTCTCATGCCCACTTGGATATTTAGGCTCTAGGTGTGTGAGATCTTCCATCACAGATCAATTCAAGCTCACAAATAACTCTCTACCATTCAACAAATATGCATTTTTGACAACGCACAATGCGTTTGCCATTGATGGAGAGCCATCACACACAGGAGTGCCTCGAGCTACCATCACTAACCAAGCAGACAGTGTAACAGAGCAGCTCAAAGAACCCGCTATAGATACACTGAAGGAAATTGAAGCTTTTCTATCAGCCAACCCAGCAGAAATTGTCACACTCATATTGGAAGATTATGTTAAAACACCAAAAGGATTGACGAAAGTCTTCGCCAAAGCTGGTTTGATGAAGTTTTGGTTTCCTGTGACTCGAATGCCAAAAAGAGGAGGAGATTGGCCTCTAGTGAGTGATATGATTGCTAAAAATCAAAGATTACTAGTGTTCACTTCGGTCAGGTCTAAGGAACAAAGTGAAGGCATTGCATACCAGTGGAATTACATGGTTGAAAATCAGTATGGGGATGGAGGAAGGAAAGCAGGAAGTTGTCCACACAGAGCAGAATCTTCTCCTCTTGATGACAAGAGCAAGTCCTTAGTGTTGGTAAACTATTTCCGCTCTACGCCATTTAAGCCTATTGCATGTGAAGATAACTCTGGAGGACTCATTGACATGCTACAAACCTGTCATGGTGCTGCTGCCAACAGGTGGGCTAATTATCTTGCTGTTGATTATTACAAGAGGAGTGAAGGAGGAGGTTCGTTTCAAGCCGTGGACACTCTGAATGGGAAGCTCTTGTGTGGTTGTAATGATGTGCATGCGTGTGTGCCTGGATCTACTTCACAAGCTTGCTCAGCATAG
>Glyma19g04084.1 sequence type=predicted peptide gene model=Glyma19g04084 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGSLLFLLLVIVLPLCYCVDAACSNGNCKVNDECSSNGDCGAGLYCFSCPLGYLGSRCVRSSITDQFKLTNNSLPFNKYAFLTTHNAFAIDGEPSHTGVPRATITNQADSVTEQLKNGVRALMLDTYDFRGDVWLCHSFQGQCYDFTAFEPAIDTLKEIEAFLSANPAEIVTLILEDYVKTPKGLTKVFAKAGLMKFWFPVTRMPKRGGDWPLVSDMIAKNQRLLVFTSVRSKEQSEGIAYQWNYMVENQYGDGGRKAGSCPHRAESSPLDDKSKSLVLVNYFRSTPFKPIACEDNSGGLIDMLQTCHGAAANRWANYLAVDYYKRSEGGGSFQAVDTLNGKLLCGCNDVHACVPGSTSQACSA* >Glyma19g04084.2 sequence type=predicted peptide gene model=Glyma19g04084 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGSLLFLLLVIVLPLCYCVDAACSNGNCKVNDECSSNGDCGAGLYCFSCPLGYLGSRCVRSSITDQFKLTNNSLPFNKYAFLTTHNAFAIDGEPSHTGVPRATITNQADSVTEQLKEPAIDTLKEIEAFLSANPAEIVTLILEDYVKTPKGLTKVFAKAGLMKFWFPVTRMPKRGGDWPLVSDMIAKNQRLLVFTSVRSKEQSEGIAYQWNYMVENQYGDGGRKAGSCPHRAESSPLDDKSKSLVLVNYFRSTPFKPIACEDNSGGLIDMLQTCHGAAANRWANYLAVDYYKRSEGGGSFQAVDTLNGKLLCGCNDVHACVPGSTSQACSA*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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