Glyma19g04030 - SoyBase

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Report for Sequence Feature Glyma19g04030

Feature Type:	gene_model
Chromosome:	Gm19
Start:	4140160
stop:	4149217
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g04030

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G20060	AT	Annotation by Michelle Graham. TAIR10: ARM repeat superfamily protein \| chr4:10854790-10859330 REVERSE LENGTH=1134	SoyBase	E_val: 0	ISS
GO:0009793	GO-bp	Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy	SoyBase	N/A	ISS
GO:0010413	GO-bp	Annotation by Michelle Graham. GO Biological Process: glucuronoxylan metabolic process	SoyBase	N/A	ISS
GO:0045492	GO-bp	Annotation by Michelle Graham. GO Biological Process: xylan biosynthetic process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
KOG1988	KOG	Uncharacterized conserved protein	JGI		ISS
UniRef100_I1N6D4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N6D4_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_O49433	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Integrator complex subunit 7 n=1 Tax=Arabidopsis thaliana RepID=O49433_ARATH	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma19g04030

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g04030

Paralog	Evidence	Comments
Glyma13g06481	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g04030 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g032700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g04030

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma19g04030

Limit To All Plant Sequences

>Glyma19g04030.1   sequence type=CDS   gene model=Glyma19g04030   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAACCAACTTCCGTTGCTCAAGCCATGGAATGGAGCATTCAACTAGAAATGGGTCTCCGATCTACCAAACCTGGTGTTCCTGTGAAAGCCATATCAGATATGGAGCCTCGCCTTCAGCAATGGAGTACAGAGCCTGAATTTGGCATTGCTCCCTATGCCATGTTTGGTCTTGTTCCAGGTGAAGATAAGTTATTTGCCAATACCATCCTCTTGCGCCTTGTTGATGCCTTTAGAGGAGGTGACATAGAGACAAAACTTTCAGTTGTTAGGGTTTTCTTGTCTGAACGGAAACACCGTGATAAAGAGAAGAAAAAACAGTGTAAAGGATTGCTGTCAGAGGCCAAAGTAGCTAATCACTTGGAGTTGTTGAAGAGAGTGAAATCTGTTTTTGATAGTGGGGAATTGAAGTCGAAGGCATTGGCTTTGGTTCTGTTTGGTTGTTGGGCTGATTTTGTGAAAGACAATGCTCAGATACGATACTTGATATTTTCTAGCCTTGTTTCTCCTCATGATTGTGAGGTGAGAGCATCTTTGTATGCCACTGGGTGCATTTGTGAGATATCAGATGATTTTGCATCTATTTCAGTGGAGATGCTATTCAATATAATGAATTCATCTTCAGTGCCTTTGCCTATAAAGTTGGATGCAGCTCAAGTTTTGGCAAAATGCAAATCTTCTTATTCAGTTGCTTATAAAGCATATAAGACAGGTATGGAGTTGGTACTAAATTCCTCGGATGAAGAATTTTTGGTTGCCATGTTATTCTCACTCTCAAAATTGGCTTGCATTTTAATTCCTTGTATCTCTTATCAAGTGGACTTTCTTCTTTCATTTCTCAACCGAGACAGAACTTCACATGTACAAGACACGACGTTAAAATGCTTGCATTTTTTATTCCGAAGAGGATTGTATGAACACTCAGATAATTTAGGTCTAATTCGGGGGTTATTTTCCATAATGGAGGGACCTGAAATTTCATTGGCCATGCAATATAAAGCTCTAAGGGTCTTGCACAAGGTTCTTCTTTCAATTCCACCTTCTTCACTTCACAAGGAACTTCGTGAGTTTGTCAGGCTTCTAACTGTTGTTGAGAATGCAAGTCAATATCCAGCCTCAAGGAAGAGGTGTTTGTCAATTCGTATTCTGGCAGATTTGTGTTGTAGGACGAAGGATATAGCAGATATTGACGAAGTTTTTTGTTGTTCTTTGCCATCGCGTGTTATCTCCCTAATCAAAGATCATATCAAACTTTTGTTGAAGACATTGTTGGAAGGTTGTCAAAATGATTTGACAATTTTTCAAGAGCTCCAGGGTTTGCTAAAGATTCTTCTAAATATTGTTGAAAGACACCCTAATCTTGGTTCTTTGGTACTTGATAGCTTAAAACAAGTGATTGAATATCTTGTGACTGTTGCATCTACTAATTGTGCAGTACCATCAACTCTTTTGACCATAAATTTTACAGAAGAGAAAAAATCCTTTATTTTAAAACTTTTCTGCAAGATATACAGATTTCTGGTGGCCTTCCTTGAAAATTTTTATATAGTTGGTGCTATCAATACCAAAGTGTTCAGTGAAGTGAATATTTTGGTTGGACTTGTGTGCCAGTGTAGTTTAATTGATTGCTATACATACACACTGTACCATCTACTGTTGCACAGTCAACCTATTTGTGATGGCTTGGTCCATGAGATTGATGAAACACACCTAGCTAGTTGTTGCACAATGTTTGTAAACAAAGTCTTGACAGGAACAAATGATTGGACTGCTTATAAGGTTGGTGCTCATGCAGCGTGTCAGGGTGAATGGTTGCTAGCTACTAATATATTCAGGACGTTAATAGAGAAAGTGAAGTCTGATTCTTGCTGTAGCTGGTTAAAAGCATTATTCCATTATGCTCATTCTGAAGGAAAAATCCAACTTCTTAGTCAACCAAAACAGGGAACCACCTCAATGGAGTTGATGGAGACTATCAAATTTCCTATAACATCATGTGATTACAAGGGTGATACATGTCCAAGACTTGCTAGGAGTATCAATGATTGTAATTACTATGATCAGCTTACTCAGTCTCATATGGCAGTTTTCTCTTCCTTGAAAATTTTAGAAGCGTCCGTGACAAGTTCTCAAGCATTTTGTTTTCAGAGGTGGTTTTTATCATTAAGAGCTAGAGTGTTGGAAAATTTAGTGGGTGTGCTTGGAGCTTTGAGGGAAGTTTCATTGAATGTAGCTCAGAATTTCAATCAGGTAGAGATTGAGAGTAGTGATAAGCTTCAATGCCTGAAATCTTATCAAGATATTACTCAAGCTTCTTTACAATTGTTCAGACTAGTAGAAGAATTTGATCTACTTAGAGCATCTTTCATTGGGATGGACAGTGAAACTTCTGCAGTCCTTGCAGCTCATGGTCTGAGTTGTTCAATATTAGCATTTGCAACTGCTTTTGGAGTGTCTAACATAGACCAACATTCTCAGAGAATTTTAATTGGTGGCAAAACCTCTAATTTACAGGCTTTGACAATACAAAGTTTAAGGAGGCTATTTTGGAGTGTGGATCATGAAACCCGAGCAAGTTTCTCTTTGCTGTTGAATTATTTTCACCCAAATGAGAACTGTTTATCCCCGCTGCCTAGTTACCAAAATTGGAACATTGGTTATAAAGACAGAGAGGTGCTAAATGTTTGTAGTTATGCCATCTCTGGTGCTGTCCGCTTGTTTGAGAAAATTGCACCTCAGTTTACTGAGAACGCTTTATCACTAACTTTCAATACTTTGATGAAATGGATGCACATTCATTTTCGGCTTCCCAGGTACTTCTTCAAAGTAAGGCCATTCATTGGGTCGAAGCTTTTTGTCCACAATAAGGACTCTAGTAATGGGGTTGATATATCTGTTTCGCAAGGCTCCCACCTAACACTGAATATTTGTCTTCAATTGAAGAATGTGCCACCAAAACTCCTGGTTAAGTCAACTAAGTTGTACTGCATCCTTCATGTCCCATGTGGACAAAGACAAGCCCCAGGGAACTCACACTCTGGATATGAAGCTTGGAAAGATGATGAAATTGTTGAAATGAACCAGAAGTTGTTTTGCCTTGTCTTGGATAGTGCGGCAGGCAAGAGAAGAATTGGCATGCGTAGTAGGGGCCATGGTAATAGTAGGGCCGTGGAGACATTTATGGATTTTAGACCTAATGAGAAAGGGCAGGGGTTTTCACATTGCTCACTTGATGTGTCTAACTTTCCCGTAGGTTCTTATAGAATCAAATGGCATAGCTGTTTGGTCGATAGTCAAGATTCCTATTGGAGCCTCCTTCCTTTCAACTCAGGTCCTGTATTTTTTGTTATAAAACCCAGGGTTGGCTAA

Predicted protein sequences of Glyma19g04030

Limit To All Plant Sequences

>Glyma19g04030.1   sequence type=predicted peptide   gene model=Glyma19g04030   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEPTSVAQAMEWSIQLEMGLRSTKPGVPVKAISDMEPRLQQWSTEPEFGIAPYAMFGLVPGEDKLFANTILLRLVDAFRGGDIETKLSVVRVFLSERKHRDKEKKKQCKGLLSEAKVANHLELLKRVKSVFDSGELKSKALALVLFGCWADFVKDNAQIRYLIFSSLVSPHDCEVRASLYATGCICEISDDFASISVEMLFNIMNSSSVPLPIKLDAAQVLAKCKSSYSVAYKAYKTGMELVLNSSDEEFLVAMLFSLSKLACILIPCISYQVDFLLSFLNRDRTSHVQDTTLKCLHFLFRRGLYEHSDNLGLIRGLFSIMEGPEISLAMQYKALRVLHKVLLSIPPSSLHKELREFVRLLTVVENASQYPASRKRCLSIRILADLCCRTKDIADIDEVFCCSLPSRVISLIKDHIKLLLKTLLEGCQNDLTIFQELQGLLKILLNIVERHPNLGSLVLDSLKQVIEYLVTVASTNCAVPSTLLTINFTEEKKSFILKLFCKIYRFLVAFLENFYIVGAINTKVFSEVNILVGLVCQCSLIDCYTYTLYHLLLHSQPICDGLVHEIDETHLASCCTMFVNKVLTGTNDWTAYKVGAHAACQGEWLLATNIFRTLIEKVKSDSCCSWLKALFHYAHSEGKIQLLSQPKQGTTSMELMETIKFPITSCDYKGDTCPRLARSINDCNYYDQLTQSHMAVFSSLKILEASVTSSQAFCFQRWFLSLRARVLENLVGVLGALREVSLNVAQNFNQVEIESSDKLQCLKSYQDITQASLQLFRLVEEFDLLRASFIGMDSETSAVLAAHGLSCSILAFATAFGVSNIDQHSQRILIGGKTSNLQALTIQSLRRLFWSVDHETRASFSLLLNYFHPNENCLSPLPSYQNWNIGYKDREVLNVCSYAISGAVRLFEKIAPQFTENALSLTFNTLMKWMHIHFRLPRYFFKVRPFIGSKLFVHNKDSSNGVDISVSQGSHLTLNICLQLKNVPPKLLVKSTKLYCILHVPCGQRQAPGNSHSGYEAWKDDEIVEMNQKLFCLVLDSAAGKRRIGMRSRGHGNSRAVETFMDFRPNEKGQGFSHCSLDVSNFPVGSYRIKWHSCLVDSQDSYWSLLPFNSGPVFFVIKPRVG*

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