Glyma19g04020 - SoyBase

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Report for Sequence Feature Glyma19g04020

Feature Type:	gene_model
Chromosome:	Gm19
Start:	4135589
stop:	4138365
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g04020

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G20050	AT	Annotation by Michelle Graham. TAIR10: Pectin lyase-like superfamily protein \| chr4:10849911-10852090 REVERSE LENGTH=481	SoyBase	E_val: 0	ISS
GO:0009556	GO-bp	Annotation by Michelle Graham. GO Biological Process: microsporogenesis	SoyBase	N/A	ISS
GO:0009827	GO-bp	Annotation by Michelle Graham. GO Biological Process: plant-type cell wall modification	SoyBase	N/A	ISS
GO:0009860	GO-bp	Annotation by Michelle Graham. GO Biological Process: pollen tube growth	SoyBase	N/A	ISS
GO:0010584	GO-bp	Annotation by Michelle Graham. GO Biological Process: pollen exine formation	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0004650	GO-mf	Annotation by Michelle Graham. GO Molecular Function: polygalacturonase activity	SoyBase	N/A	ISS
UniRef100_G7INE9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Polygalacturonase QRT3 n=1 Tax=Medicago truncatula RepID=G7INE9_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1LWU1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LWU1_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma19g04020

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g04020

Paralog	Evidence	Comments
Glyma13g06470	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g04020 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g032600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g04020

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma19g04020

Limit To All Plant Sequences

>Glyma19g04020.2   sequence type=transcript   gene model=Glyma19g04020   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTGTTAACTGCTTCCTTTTCTGTCACATACGGGGAAAATTAAAAATTTTACAGGAAAAAAGTTTAAGGAGAAACCTTCAAACTAACACTAGCATCATTGTCCAAATGAAGTGTGCATTATATGACTATGATCCACTATGAAAAATGTCACCCAATATTTCCATATAAAGACTTGCTTAACCCCTCCACTTTTTCCCTTCCACACTCCCTTATTTATATGCGATTTCAACCAAAGCCCTTTTTCATAACTGCTTCTCCCTAGCCCCAATTGCTTCAAAAAAATCTCACCAAGGGAAATTAGCCACAATGGCAACAATATCTCCAATGTGGTTCATACTTCTTGGAATAACTTGTTTCTGTGTGACTGATTCTTATGGGGCGAACATGCCTCTAAGGACTCTTTATGGTGGCACTCATCAAGAAGCATTGCTTGGACTTGAGGCATTCAAGGCCTCTATAACTAGGCGTGACTCCATTGCTTCAACACCACCTTCATTCTCACCCTCTCCTAGTCCTTCTCCTCTTCCATCACAGGATCTCAAGAAATCACATGTGTACCTTGTGACATCTTATGGTGCAGATCCAACAGGCAATTCAGACAGCACTGAAGCTCTTCTTGCAGCCATAGCAGATGCAGCCAAAGGTCCAAGTGTAGGGTTCTTAATGAAGGACATCAAAGACCTTGGAGGTGCTCAGATTAATCTTGAGGGTGGAAAGTACATAATTAGCAAACCACTGCAGTTGCCACTGGCCGGGGTTGGAAACCTCATGATACATGGGGGAACTATAAGAGCCTCATATAATTTTCCACCAGATGGGCATCTCATAGACTTGTCCACCTCAGGAGAAAGCAACTCCTACAATTATGAGTACATAACTCTCAAGGACCTCTTGCTAGACTCAAACTTCAGGGGAGGGGGCATTTCAGTCAAAAAAACACTTAGAATCAACATAGAAAATTGTTACATCACACATTTCAACACCACTGGAATTTTAGTCCAAGGTGGCCATGAAACCTACATAAGAAACACCTTCCTTGGCCAGCACATCACTGCTGGAGGGGACAAACATGAAAGGGACTTCTCAGGCACTGGAATAAGCCTTCTGGGAAATGACAATGCAGTAACAGATGTTGTGATTTTCTCTGCTGAAATAGGAATAATTGTCACTGGCCAAGCCAACACTCTTTCTGGAGTACATTGCTACAATAAGGCCACCGGCTTCGGTGGCAAAGGGATTTATTTGAAGCTTCCTGGTTTGACACAAACTAGGATTGTGAATTGTTACATGGATTACACCAATATTGTCGCCGAAGATCCAGTTCAGCTCCACATCTCTAGCAGTTTCTTCCTTGGTGATGCTGGTATTGTGTTAAAATCAGTCAATGGGATTGTAAGTGGTCTCAATATTGTTGATAACATGTTCTCCGGCTTGAATAAAGGGGTTGATATAGTCAAGTTGGACCAATCAAATAGTCCTTTTAATCAAATTGATCAAGTTTTTGTGGCTAGAAATGTTGTGAGGGGTATGAACTTAAAGGCCACAACTGCAAAAATGTCTTTGCTTGGTAATGGAACCACATGGACTTCTGATTTTACCAAAGTTTTGCTTTTCCCTAACCTTATCAAACATGTTGTGTACTCCTTAAGTGCCAATGGCAACACCTTCCCAAATCATGCTCTCAGAAACGTTTCTCAGAATCGTGTTGTGATCGAAACGGATGAGGCTGTGAATGCAAATGTTTTTGTCACAGTGGATCAAGGTAATGCAAGTTGAAGAAAGTTAGAACTTAGAAGGTGGTGGCCAAAAAGTTGTTGGATCAAGAAATTCTGATTGAAGAGGGAATTGTGCATAGCCTGGTTGCGAATTCTCTCTTTATTTTATTTTTTGGATAGCATTAAATTTATGAATGTAAGCATAGTACAAAGATTTCAGATTGTATGTTTCAAGTTATTAAATACATTATACATTAAACTGTAAATAAAGGGAATAATATTTTATAGGAAACAATTCTCATTAGTTTGGGTAAAACACTTGGACCTAGTTTGAATAATTTGAAAATACTTGGAAAATAGCTTTCATAGTTGTGTATAACACACAAACCAACA

Coding sequences of Glyma19g04020

Limit To All Plant Sequences

>Glyma19g04020.1   sequence type=CDS   gene model=Glyma19g04020   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGGACATCAAAGACCTTGGAGGTGCTCAGATTAATCTTGAGGGTGGAAAGTACATAATTAGCAAACCACTGCAGTTGCCACTGGCCGGGGTTGGAAACCTCATGATACATGGGGGAACTATAAGAGCCTCATATAATTTTCCACCAGATGGGCATCTCATAGACTTGTCCACCTCAGGAGAAAGCAACTCCTACAATTATGAGTACATAACTCTCAAGGACCTCTTGCTAGACTCAAACTTCAGGGGAGGGGGCATTTCAGTCAAAAAAACACTTAGAATCAACATAGAAAATTGTTACATCACACATTTCAACACCACTGGAATTTTAGTCCAAGGTGGCCATGAAACCTACATAAGAAACACCTTCCTTGGCCAGCACATCACTGCTGGAGGGGACAAACATGAAAGGGACTTCTCAGGCACTGGAATAAGCCTTCTGGGAAATGACAATGCAGTAACAGATGTTGTGATTTTCTCTGCTGAAATAGGAATAATTGTCACTGGCCAAGCCAACACTCTTTCTGGAGTACATTGCTACAATAAGGCCACCGGCTTCGGTGGCAAAGGGATTTATTTGAAGCTTCCTGGTTTGACACAAACTAGGATTGTGAATTGTTACATGGATTACACCAATATTGTCGCCGAAGATCCAGTTCAGCTCCACATCTCTAGCAGTTTCTTCCTTGGTGATGCTGGTATTGTGTTAAAATCAGTCAATGGGATTGTAAGTGGTCTCAATATTGTTGATAACATGTTCTCCGGCTTGAATAAAGGGGTTGATATAGTCAAGTTGGACCAATCAAATAGTCCTTTTAATCAAATTGATCAAGTTTTTGTGGCTAGAAATGTTGTGAGGGGTATGAACTTAAAGGCCACAACTGCAAAAATGTCTTTGCTTGGTAATGGAACCACATGGACTTCTGATTTTACCAAAGTTTTGCTTTTCCCTAACCTTATCAAACATGTTGTGTACTCCTTAAGTGCCAATGGCAACACCTTCCCAAATCATGCTCTCAGAAACGTTTCTCAGAATCGTGTTGTGATCGAAACGGATGAGGCTGTGAATGCAAATGTTTTTGTCACAGTGGATCAAGGTAATGCAAGTTGA

>Glyma19g04020.2   sequence type=CDS   gene model=Glyma19g04020   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAACAATATCTCCAATGTGGTTCATACTTCTTGGAATAACTTGTTTCTGTGTGACTGATTCTTATGGGGCGAACATGCCTCTAAGGACTCTTTATGGTGGCACTCATCAAGAAGCATTGCTTGGACTTGAGGCATTCAAGGCCTCTATAACTAGGCGTGACTCCATTGCTTCAACACCACCTTCATTCTCACCCTCTCCTAGTCCTTCTCCTCTTCCATCACAGGATCTCAAGAAATCACATGTGTACCTTGTGACATCTTATGGTGCAGATCCAACAGGCAATTCAGACAGCACTGAAGCTCTTCTTGCAGCCATAGCAGATGCAGCCAAAGGTCCAAGTGTAGGGTTCTTAATGAAGGACATCAAAGACCTTGGAGGTGCTCAGATTAATCTTGAGGGTGGAAAGTACATAATTAGCAAACCACTGCAGTTGCCACTGGCCGGGGTTGGAAACCTCATGATACATGGGGGAACTATAAGAGCCTCATATAATTTTCCACCAGATGGGCATCTCATAGACTTGTCCACCTCAGGAGAAAGCAACTCCTACAATTATGAGTACATAACTCTCAAGGACCTCTTGCTAGACTCAAACTTCAGGGGAGGGGGCATTTCAGTCAAAAAAACACTTAGAATCAACATAGAAAATTGTTACATCACACATTTCAACACCACTGGAATTTTAGTCCAAGGTGGCCATGAAACCTACATAAGAAACACCTTCCTTGGCCAGCACATCACTGCTGGAGGGGACAAACATGAAAGGGACTTCTCAGGCACTGGAATAAGCCTTCTGGGAAATGACAATGCAGTAACAGATGTTGTGATTTTCTCTGCTGAAATAGGAATAATTGTCACTGGCCAAGCCAACACTCTTTCTGGAGTACATTGCTACAATAAGGCCACCGGCTTCGGTGGCAAAGGGATTTATTTGAAGCTTCCTGGTTTGACACAAACTAGGATTGTGAATTGTTACATGGATTACACCAATATTGTCGCCGAAGATCCAGTTCAGCTCCACATCTCTAGCAGTTTCTTCCTTGGTGATGCTGGTATTGTGTTAAAATCAGTCAATGGGATTGTAAGTGGTCTCAATATTGTTGATAACATGTTCTCCGGCTTGAATAAAGGGGTTGATATAGTCAAGTTGGACCAATCAAATAGTCCTTTTAATCAAATTGATCAAGTTTTTGTGGCTAGAAATGTTGTGAGGGGTATGAACTTAAAGGCCACAACTGCAAAAATGTCTTTGCTTGGTAATGGAACCACATGGACTTCTGATTTTACCAAAGTTTTGCTTTTCCCTAACCTTATCAAACATGTTGTGTACTCCTTAAGTGCCAATGGCAACACCTTCCCAAATCATGCTCTCAGAAACGTTTCTCAGAATCGTGTTGTGATCGAAACGGATGAGGCTGTGAATGCAAATGTTTTTGTCACAGTGGATCAAGGTAATGCAAGTTGA

Predicted protein sequences of Glyma19g04020

Limit To All Plant Sequences

>Glyma19g04020.1   sequence type=predicted peptide   gene model=Glyma19g04020   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKDIKDLGGAQINLEGGKYIISKPLQLPLAGVGNLMIHGGTIRASYNFPPDGHLIDLSTSGESNSYNYEYITLKDLLLDSNFRGGGISVKKTLRINIENCYITHFNTTGILVQGGHETYIRNTFLGQHITAGGDKHERDFSGTGISLLGNDNAVTDVVIFSAEIGIIVTGQANTLSGVHCYNKATGFGGKGIYLKLPGLTQTRIVNCYMDYTNIVAEDPVQLHISSSFFLGDAGIVLKSVNGIVSGLNIVDNMFSGLNKGVDIVKLDQSNSPFNQIDQVFVARNVVRGMNLKATTAKMSLLGNGTTWTSDFTKVLLFPNLIKHVVYSLSANGNTFPNHALRNVSQNRVVIETDEAVNANVFVTVDQGNAS*

>Glyma19g04020.2   sequence type=predicted peptide   gene model=Glyma19g04020   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MATISPMWFILLGITCFCVTDSYGANMPLRTLYGGTHQEALLGLEAFKASITRRDSIASTPPSFSPSPSPSPLPSQDLKKSHVYLVTSYGADPTGNSDSTEALLAAIADAAKGPSVGFLMKDIKDLGGAQINLEGGKYIISKPLQLPLAGVGNLMIHGGTIRASYNFPPDGHLIDLSTSGESNSYNYEYITLKDLLLDSNFRGGGISVKKTLRINIENCYITHFNTTGILVQGGHETYIRNTFLGQHITAGGDKHERDFSGTGISLLGNDNAVTDVVIFSAEIGIIVTGQANTLSGVHCYNKATGFGGKGIYLKLPGLTQTRIVNCYMDYTNIVAEDPVQLHISSSFFLGDAGIVLKSVNGIVSGLNIVDNMFSGLNKGVDIVKLDQSNSPFNQIDQVFVARNVVRGMNLKATTAKMSLLGNGTTWTSDFTKVLLFPNLIKHVVYSLSANGNTFPNHALRNVSQNRVVIETDEAVNANVFVTVDQGNAS*

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