Glyma19g03987 - SoyBase

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Report for Sequence Feature Glyma19g03987

Feature Type:	gene_model
Chromosome:	Gm19
Start:	4024143
stop:	4026374
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g03987

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G17430	AT	Annotation by Michelle Graham. TAIR10: O-fucosyltransferase family protein \| chr4:9725201-9726801 REVERSE LENGTH=507	SoyBase	E_val: 6.00E-154	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005768	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: endosome	SoyBase	N/A	ISS
GO:0005794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus	SoyBase	N/A	ISS
GO:0005802	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: trans-Golgi network	SoyBase	N/A	ISS
GO:0016757	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring glycosyl groups	SoyBase	N/A	ISS
PF10250	PFAM	GDP-fucose protein O-fucosyltransferase	JGI		ISS
UniRef100_G7LAH6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: CigA protein n=1 Tax=Medicago truncatula RepID=G7LAH6_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1LWT4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LWT4_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma19g03987

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma19g03987 not represented in the dataset	Glyma19g03987 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g03987

Paralog	Evidence	Comments
Glyma13g06400	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g03987 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g032200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g03987

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma19g03987

Limit To All Plant Sequences

>Glyma19g03987.1   sequence type=CDS   gene model=Glyma19g03987   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTGTCTAAAAGAAAACCCCTTTACAGATTCCCACTCATTCCTGTTTCTGCCCTTATCATATGCCTCTTCTTCTTGGTTTTGTATCACTACCATGCAAAACCTGATTCCCAGTTCCATGGATTGTCCAAAACTTCATCAACATCATCACATACCCCTCGATGCTCCGGGCAAGCCCTCGCCTTGGGGGAGAAATTCGTGTCGTATGCACCTCACAGCGGGTTCAGCAACCAGCTTTCGGAGTTCAAGAATGCTGTTCTGATTGTGGGGATACTGAATCGGACTTTGGTGGTTCCTCCCATTCTGGATCACCATGCCGTTGCCCTGGGTAGTTGTCCAAAGTTTCGCATTGTGGATCCAAAGGATGTTCGGATGTCTGTTTGGGATCATGTGATTGAGGTCATCCAGAGTCGAAGGCTAAAGCAATGTGGATCTCTGCTAGCTGGGGTCCATGGTAGTATTGGAAAGTGTATATATGCTGTCAATGAAGATTGCAGAACTACAGTATGGACTTACCATAAATATGGCCATGAAGATGACAAGTTGGATTCATTCCAAGCAGATGAACAACTGAAGCAAAAAAAGAAAATATCATATGTTAGGAGATGGAAAGATGTATTTAAGACTCTTGGACCTGGTTCTGAAGTTGAATCAGCCTCACTACTGGTATTTGGAAGCCTTTTCTCTGCCGCATACAAAGGTTCTGAACTACATGTTGATATTCATGAATCTCATCAGGACCAGAGGTTTCTATCATTGATGAAGAAGATTAAACGTATTCCATTTGTCCTAGAAATTATGATTGCCGGAAAGCAGTTCGTTAAAGAAACCATAAAGGCTCCATTTCTTTGTGCACAACTTAGACTGCTGGATGGGCAGTTTAAGAATCATCAAAAGGCTACATTTCACGGATTAAGGCAAAAAATTGAATCTATGAGGAAGGAAGGCCTTCTACCCATTCATATTTTTATAATGACTGATCTTCCTGGAGATAATTGGACTGGTACTTATTTAGGTGATTTAATTAGTGACAAACGTAATTATAAGGTGCATTTCTTGAAAGAGAATGATAAGCTGGTTAGGCGAGCAGCCGTAAAACTCATGGCAGTGGGTCATGGACAGAGGTTCATTTCAAATTCAGATACTTCAATTAGTAAAAGGTATTGTTCCAGTCAGAGATTACCAGATCTACTTCTTTATGTTGAGCAGACTGTATGTAGCTGTGCATCTCTTGGTTTTATTGGAACTCCTGGGTCAACAATTGCTGAAAATATAGAACTAATGAGAAAGATTGGCTCAAGCTCTCAGTACTGTTGA

Predicted protein sequences of Glyma19g03987

Limit To All Plant Sequences

>Glyma19g03987.1   sequence type=predicted peptide   gene model=Glyma19g03987   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLSKRKPLYRFPLIPVSALIICLFFLVLYHYHAKPDSQFHGLSKTSSTSSHTPRCSGQALALGEKFVSYAPHSGFSNQLSEFKNAVLIVGILNRTLVVPPILDHHAVALGSCPKFRIVDPKDVRMSVWDHVIEVIQSRRLKQCGSLLAGVHGSIGKCIYAVNEDCRTTVWTYHKYGHEDDKLDSFQADEQLKQKKKISYVRRWKDVFKTLGPGSEVESASLLVFGSLFSAAYKGSELHVDIHESHQDQRFLSLMKKIKRIPFVLEIMIAGKQFVKETIKAPFLCAQLRLLDGQFKNHQKATFHGLRQKIESMRKEGLLPIHIFIMTDLPGDNWTGTYLGDLISDKRNYKVHFLKENDKLVRRAAVKLMAVGHGQRFISNSDTSISKRYCSSQRLPDLLLYVEQTVCSCASLGFIGTPGSTIAENIELMRKIGSSSQYC*

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