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Report for Sequence Feature Glyma19g03900

Feature Type:gene_model
Chromosome:Gm19
Start:3949138
stop:3949943
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma19g03900
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G12600AT Annotation by Michelle Graham. TAIR10: nudix hydrolase homolog 16 | chr3:4004676-4005995 FORWARD LENGTH=171 SoyBaseE_val: 2.00E-30ISS
GO:0005739GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion SoyBaseN/AISS
GO:0016787GO-mf Annotation by Michelle Graham. GO Molecular Function: hydrolase activity SoyBaseN/AISS
PTHR12629Panther DIPHOSPHOINOSITOL POLYPHOSPHATE PHOSPHOHYDROLASE JGI ISS
PF00293PFAM NUDIX domain JGI ISS
UniRef100_B9RG80UniRef Annotation by Michelle Graham. Most informative UniRef hit: Diphosphoinositol polyphosphate phosphohydrolase, putative n=1 Tax=Ricinus communis RepID=B9RG80_RICCO SoyBaseE_val: 1.00E-43ISS
UniRef100_I1JW37UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JW37_SOYBN SoyBaseE_val: 7.00E-49ISS

Expression Patterns of Glyma19g03900
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma19g03900 not represented in the dataset
Glyma19g03900 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma19g03900 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.19g031500 Wm82.a2.v1IGC As supplied by JGI

References for Glyma19g03900
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma19g03900
>Glyma19g03900.1   sequence type=CDS   gene model=Glyma19g03900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GGAGGTTGGGAGAATGATGAAACTGTTGAGGAGGCTGCAGTTAGAGAAGCTATTGAAGAAGCAGGAGTTCGAGGAGACCTAATGTGGTATTGCATTGGTTTTGAAGTCATCTATGATGAGTTTGATTTTCTTGGGAACTATGAATTTAGGAGTAAGACCCTCCAAGATGAGTGTAGTCCAGAAGGTTTATGCAAAGCAGCAATGTTTGCATTGTTTGTGAAAGAGGAACTTGAGTCATGGCCTGAGCAAAGCACCAGAAAAAGGAGTTGGCTGGCTGTATCAGAGGCACTAGCAAACTGTTGA
Predicted protein sequences of Glyma19g03900
>Glyma19g03900.1   sequence type=predicted peptide   gene model=Glyma19g03900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GGWENDETVEEAAVREAIEEAGVRGDLMWYCIGFEVIYDEFDFLGNYEFRSKTLQDECSPEGLCKAAMFALFVKEELESWPEQSTRKRSWLAVSEALANC*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
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