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Report for Sequence Feature Glyma19g03875

Feature Type:gene_model
Chromosome:Gm19
Start:3903565
stop:3904965
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G16060AT Annotation by Michelle Graham. TAIR10: ATP binding microtubule motor family protein | chr3:5447503-5451196 FORWARD LENGTH=684 SoyBaseE_val: 1.00E-68ISS
GO:0007018GO-bp Annotation by Michelle Graham. GO Biological Process: microtubule-based movement SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005739GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0003777GO-mf Annotation by Michelle Graham. GO Molecular Function: microtubule motor activity SoyBaseN/AISS
GO:0005524GO-mf Annotation by Michelle Graham. GO Molecular Function: ATP binding SoyBaseN/AISS
PTHR24115Panther FAMILY NOT NAMED JGI ISS
PTHR24115:SF79Panther SUBFAMILY NOT NAMED JGI ISS
PF00225PFAM Kinesin motor domain JGI ISS
UniRef100_B9RKR8UniRef Annotation by Michelle Graham. Most informative UniRef hit: Kif4, putative n=1 Tax=Ricinus communis RepID=B9RKR8_RICCO SoyBaseE_val: 7.00E-78ISS
UniRef100_UPI0002339159UniRef Annotation by Michelle Graham. Best UniRef hit: UPI0002339159 related cluster n=1 Tax=unknown RepID=UPI0002339159 SoyBaseE_val: 1.00E-143ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma19g03875 not represented in the dataset

Glyma19g03875 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Corresponding NameAnnotation VersionEvidenceComments
Glyma.19g031400 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma19g03875.1   sequence type=CDS   gene model=Glyma19g03875   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGAAACAGCAGGTTTGCATTGTTAGCTTGCAAGAATATAAATTATCTAAAGTTGAGACAATCAAGGAATTTATTGAGAGGAAATTCCACAAGAAGTACTGGTACAAGAGGAGCAAATGAGGAATCCTCTCGATCACATGCTATACTTCAACTTTGTATCAAGGGATCAGCTGATGGGACTAAATCAAAGCCTGCTCGACTTGTGGGCAAACTATCTTTTATAGATCTGGCTGGAAGTGAACGTGGTGCAGATACGACAGATAATGATAAGCAGACTAGAGGAAGTAAATTGACTGAAGTTCTGCGAGATTCTTTTGTTGGAGATTCGCGCACTTTAATGATATCATGCATTTCACCTAGTTCAGGTTCATGCGAGCATACACTTAACACATTAAGATATGTTGACAGCCTGTCAAAAGGGAACACCTCTAGAAGGGATCCTCTTTCTTCCTCAAACCTTAGAGACTCTGCTGTGTTGCCTGGCTCTTCAGTTTTATCTCATGATGATACCTTGGAGGATGAAGTAACATATGTTTCCGAAAGAGAGCCCTCTTATCCGAATAATGTGGACCGTGTTCCAAGTGGTAGAATGGGGGGAAATTTGACACCATTTGTGTATTTTGATCCACAAAATGGTCGAATAGGCAGTCAAAAGGCCAGAACTGCAAATGAATATGATTACCTAGGACCGACATATGAACAAGATAGAACAAGAAAAACAAAATCTCGTGTTAAACATGTGGATGAATCGCATTTTGAGGCTAATCATTCTGATCCCGATGATAATTTAAATGCCCTCCTGAAGGAAGAGGAAGATCTTGTAATTGCTCACTAG

>Glyma19g03875.1   sequence type=predicted peptide   gene model=Glyma19g03875   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGNSRFALLACKNINYLKLRQSRNLLRGNSTRSTGTRGANEESSRSHAILQLCIKGSADGTKSKPARLVGKLSFIDLAGSERGADTTDNDKQTRGSKLTEVLRDSFVGDSRTLMISCISPSSGSCEHTLNTLRYVDSLSKGNTSRRDPLSSSNLRDSAVLPGSSVLSHDDTLEDEVTYVSEREPSYPNNVDRVPSGRMGGNLTPFVYFDPQNGRIGSQKARTANEYDYLGPTYEQDRTRKTKSRVKHVDESHFEANHSDPDDNLNALLKEEEDLVIAH*







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