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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G02150 | AT | Annotation by Michelle Graham. TAIR10: plastid transcription factor 1 | chr3:391522-392450 FORWARD LENGTH=278 | SoyBase | E_val: 2.00E-47 | ISS |
| GO:0006355 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0009694 | GO-bp | Annotation by Michelle Graham. GO Biological Process: jasmonic acid metabolic process | SoyBase | N/A | ISS |
| GO:0009753 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to jasmonic acid stimulus | SoyBase | N/A | ISS |
| GO:0009965 | GO-bp | Annotation by Michelle Graham. GO Biological Process: leaf morphogenesis | SoyBase | N/A | ISS |
| GO:0030154 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell differentiation | SoyBase | N/A | ISS |
| GO:0031347 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of defense response | SoyBase | N/A | ISS |
| GO:0045962 | GO-bp | Annotation by Michelle Graham. GO Biological Process: positive regulation of development, heterochronic | SoyBase | N/A | ISS |
| GO:0048366 | GO-bp | Annotation by Michelle Graham. GO Biological Process: leaf development | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0003700 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| PF03634 | PFAM | TCP family transcription factor | JGI | ISS | |
| UniRef100_B9SNR1 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Transcription factor, putative n=1 Tax=Ricinus communis RepID=B9SNR1_RICCO | SoyBase | E_val: 7.00E-73 | ISS |
| UniRef100_UPI0001B36B59 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI0001B36B59 related cluster n=1 Tax=unknown RepID=UPI0001B36B59 | SoyBase | E_val: 0 | ISS |
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Glyma19g03786 not represented in the dataset |
Glyma19g03786 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma13g06270 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.19g030900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma19g03786.2 sequence type=transcript gene model=Glyma19g03786 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATTAAATTAATAAGTCGTATACCAATACTTTAATCAATTCAATAGTTACCGATCCAATTTTAAAATATTACTAATAGCCAGTTTGGCTTTACATTTTGGATGTGATTTTTAAAAATTAATAGTTATCACTTCCCCATCTTAAATGTGATTCTTCTTTTCTCAAAGTTCTTGAAACATGCTATAAGTAGATACTGAAGTTTCTATATCTGCAATTCTTTGGCTGATATATAGTTATTTAGAGTTTTTGGTTAGTGCATCCAGCTCTTGCCGAACTGACCATGTAATAGGAATCCAAACATGTCTTAGGGTTTTTCATGTCATGTGTATTTTTTATGTGGAATTGAAGCAGCAAAATTAATACATGATTTATATTATTCATACTTTATTTTTTTTATAATATACAAAATCGAATAAATTAACAATATTAACAAAGATCTGCAGTAACAAAAAAAACAATTAACAAAGATCTGGTTTGGTGTATGGCGTATTCCATGACTCCTTAAATTCTCTCTCTTTCTCTCTTAAACCAATAATTGAGTTTGATTAAAAAAAATTATATAAACGTGAAGAGGTCAGTTCTCACTTTCTGCATGTTTCAGGGTTTGTCCATGTTTTAGAATCAATGAAGGAAAAAAGAAAGTGAAAATTTTCTCCATTTACGCTCGTGAGGATTTTAGGGTTTGGAAGTTGGTATATTTGTAACTCCTCCAGTTCCTTGCATTGGTGAAGATCACTAAACCAATTCCAAATTGTCTTAGACAAATGAAGAAGAGAAGAAAACTCGCGTACGTTTCTGTATCTTCTCATTAATTGATCACTTTCTCTTGAAGAAAGGCATGCGATTAATTAATCCACTTGTGGGGGTGTCAGATGTTAGCTTCTAAGTGAAAAATTATCACAAGTTGCCCCCCATGCATATATCTCTCTGCAATAGTACTGTGTGGTCCTAAGTGAGTGTCGTAAAAGATAACATCATATGTTGGTCCCTCACCTATATATGTAGCTTTACATTGTCCGAAGTAGTTATCACACACAAAGACATGACAATTCTCTCGGACTAGACACCACAACTTTTGAATCTTACTTGCTAAAATGACTTATCTAAATGGGCGTGGTCGGTTCCATTCCGGCATCTTCCTTTTCTCCAAGCTGCGGACTCCACTTATTCACCAATTTATTCTATATGCAATCAAATTTCCAAAACCCAAGTTTGAAACCTTGATAAATAGTTGTTCCAGATTGGCATCAAAAGTAAGAAGGTGCACAATTCGACCTTCTCCACTATAATTTGCAATGACATATATCAAACAGTGATACCAACTAGGAGTGACATGCAGCAAATTCACACTGCAAAATTCACAATTAAGAGTTTCATTGTTGAAGGTGGAAGAGAATTCCATGAAGAAAAACCAACAACAACAATGAAAGAAATACTACAATGATCAACAGCACGAAAGAAACTGATTTTCCACTAAAACAAGAAGGTCTTTCTTCAAGTGATCATGAGAAGGCAAAGGCTCCATCGAGCTCATCATCATCACAATGGCTAAAACTGAAGGATCCAAGGATTGTTCGAGTATCAAGAGCCTTTGGAGGAAAAGACAGGCATAGCAAGGTATGCACAATAAGAGGACTAAGAGATAGAAGAGTGAGGCTTTCAGTCCCTACAGCAATTCACCTCTATGATCTCCAAGATAGGCTTGGACTCAACCAACCAAGCAAGGTTGTTGATTGGTTGCTCAATGCAGCAAAACATGAAATTGATGAATTGCCACCACTTCCAATTCCTCCAGGTAACTTCACCCTTGGTTATCCCTCTCTTGTTTCTTGTAATGAAGTTAGCACCTCTCGTGAAGGTTCAGGCCAAAACACTTTATTATGGAAACCAAAGCCAGGAGAAATAATGGTTAGTGATCATGATAAGGCAAATTGGATGAATAGAAGAGAAGGAGATGATGATGATGATAATAATCATAATAATAGTAATGGTGATAAACAAGGAAGCAATAATAATTGTCATGGTGGTGCACTTGTTTTGCCAAATAATCTCTTGCCAACAAGACCAAACCATCCTTCTTTTTTGGGTTTGATGAACACTATGCCATCACTTGGTTACCAATGGGAACCTAATTCTTCAGCTGCTGATGTTAATGTTCAATGGCAAAACCATGGATTTTTTAACCAAACAGATGTACACAGCATCGATGTGGTTCCATTTCCGTCAACACTGGCTCTATCAACTGGGAATAGTACTAGTACTACTACTACTTCTCAGATTTTGGTGTGTCCTCCTCCTCCGGGAGCAACAACACAGCCATATTTTCCTTCTTCACATTTTGCAACAATGGAGATGAATGCAAGGCAAATCAACCACTATCAGATGCTGAGTTCAAGTTCTCATCAAAATCTCTTGGCAAATTCTCTCAATCATCCATCATCACAGCAACTCATGAGCCAATCCGGGAAAGCACCATTCAGCTTGCGAATTAGGCCTAAACTTTTCCATTCTCCTAATAGCAGTGAAAGCCATTCCCAAAAAGATCAGGATTTCCCTTCCAAGTGATGCACAAATAGAGCAAAATAAAGTTGTCAAAATTCTTCTTCTCCTCACAAATTATGCATGGATTGATATCTTGAGGGCTGTGTGGGAATTAGTTGCAAGACATATTATTCAACGTTTTGGGGTTTGAATAAACATTCCGTTTTTGTCAAAGTTATGTTTGGTTTTATGATTTTCCATTCAGTTTGATCTATATGGATATGCCATGCAAAGGTCTACAAAAGAATGGTTTTCTTTTCAAGGGTAAGAGCTTTTTCCTGAAGTGATGATGTGATTGATACACTAAAGAGAACGCATGCTCAGATAAGTTCACACTCTCTTCTATGCATTGAGAAAGGTTGGAAGGTGGAATAATAATATTATCATTTTGATAGTGCGTTTTGGATTTGTTTTTGTTTTGGTTAAGTAAACATCTTATGTGTTTGAATGAGACAGAATTTCTCAGAGTCCTATGTTATATACTATTTGTTAGTTATTAATTACTTTTTTTTATTAAAGAATTCATGTTTTATTCTTTAATTGTGTTTGTATATATTCCATGCATGAGA
>Glyma19g03786.1 sequence type=CDS gene model=Glyma19g03786 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGATCAACAGCACGAAAGAAACTGATTTTCCACTAAAACAAGAAGGTCTTTCTTCAAGTGATCATGAGAAGGCAAAGGCTCCATCGAGCTCATCATCATCACAATGGCTAAAACTGAAGGATCCAAGGATTGTTCGAGTATCAAGAGCCTTTGGAGGAAAAGACAGGCATAGCAAGGTATGCACAATAAGAGGACTAAGAGATAGAAGAGTGAGGCTTTCAGTCCCTACAGCAATTCACCTCTATGATCTCCAAGATAGGCTTGGACTCAACCAACCAAGCAAGGTTGTTGATTGGTTGCTCAATGCAGCAAAACATGAAATTGATGAATTGCCACCACTTCCAATTCCTCCAGGTAACTTCACCCTTGGTTATCCCTCTCTTGTTTCTTGTAATGAAGTTAGCACCTCTCGTGAAGGTTCAGGCCAAAACACTTTATTATGGAAACCAAAGCCAGGAGAAATAATGGTTAGTGATCATGATAAGGCAAATTGGATGAATAGAAGAGAAGGAGATGATGATGATGATAATAATCATAATAATAGTAATGGTGATAAACAAGGAAGCAATAATAATTGTCATGGTGGTGCACTTGTTTTGCCAAATAATCTCTTGCCAACAAGACCAAACCATCCTTCTTTTTTGGGTTTGATGAACACTATGCCATCACTTGGTTACCAATGGGAACCTAATTCTTCAGCTGCTGATGTTAATGTTCAATGGCAAAACCATGGATTTTTTAACCAAACAGATGTACACAGCATCGATGTGGTTCCATTTCCGTCAACACTGGCTCTATCAACTGGGAATAGTACTAGTACTACTACTACTTCTCAGATTTTGGTGTGTCCTCCTCCTCCGGGAGCAACAACACAGCCATATTTTCCTTCTTCACATTTTGCAACAATGGAGATGAATGCAAGGCAAATCAACCACTATCAGATGCTGAGTTCAAGTTCTCATCAAAATCTCTTGGCAAATTCTCTCAATCATCCATCATCACAGCAACTCATGAGCCAATCCGGGAAAGCACCATTCAGCTTGCGAATTAGGCCTAAACTTTTCCATTCTCCTAATAGCAGTGAAAGCCATTCCCAAAAAGATCAGGATTTCCCTTCCAAGTGA >Glyma19g03786.2 sequence type=CDS gene model=Glyma19g03786 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGATCAACAGCACGAAAGAAACTGATTTTCCACTAAAACAAGAAGGTCTTTCTTCAAGTGATCATGAGAAGGCAAAGGCTCCATCGAGCTCATCATCATCACAATGGCTAAAACTGAAGGATCCAAGGATTGTTCGAGTATCAAGAGCCTTTGGAGGAAAAGACAGGCATAGCAAGGTATGCACAATAAGAGGACTAAGAGATAGAAGAGTGAGGCTTTCAGTCCCTACAGCAATTCACCTCTATGATCTCCAAGATAGGCTTGGACTCAACCAACCAAGCAAGGTTGTTGATTGGTTGCTCAATGCAGCAAAACATGAAATTGATGAATTGCCACCACTTCCAATTCCTCCAGGTAACTTCACCCTTGGTTATCCCTCTCTTGTTTCTTGTAATGAAGTTAGCACCTCTCGTGAAGGTTCAGGCCAAAACACTTTATTATGGAAACCAAAGCCAGGAGAAATAATGGTTAGTGATCATGATAAGGCAAATTGGATGAATAGAAGAGAAGGAGATGATGATGATGATAATAATCATAATAATAGTAATGGTGATAAACAAGGAAGCAATAATAATTGTCATGGTGGTGCACTTGTTTTGCCAAATAATCTCTTGCCAACAAGACCAAACCATCCTTCTTTTTTGGGTTTGATGAACACTATGCCATCACTTGGTTACCAATGGGAACCTAATTCTTCAGCTGCTGATGTTAATGTTCAATGGCAAAACCATGGATTTTTTAACCAAACAGATGTACACAGCATCGATGTGGTTCCATTTCCGTCAACACTGGCTCTATCAACTGGGAATAGTACTAGTACTACTACTACTTCTCAGATTTTGGTGTGTCCTCCTCCTCCGGGAGCAACAACACAGCCATATTTTCCTTCTTCACATTTTGCAACAATGGAGATGAATGCAAGGCAAATCAACCACTATCAGATGCTGAGTTCAAGTTCTCATCAAAATCTCTTGGCAAATTCTCTCAATCATCCATCATCACAGCAACTCATGAGCCAATCCGGGAAAGCACCATTCAGCTTGCGAATTAGGCCTAAACTTTTCCATTCTCCTAATAGCAGTGAAAGCCATTCCCAAAAAGATCAGGATTTCCCTTCCAAGTGA
>Glyma19g03786.1 sequence type=predicted peptide gene model=Glyma19g03786 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MINSTKETDFPLKQEGLSSSDHEKAKAPSSSSSSQWLKLKDPRIVRVSRAFGGKDRHSKVCTIRGLRDRRVRLSVPTAIHLYDLQDRLGLNQPSKVVDWLLNAAKHEIDELPPLPIPPGNFTLGYPSLVSCNEVSTSREGSGQNTLLWKPKPGEIMVSDHDKANWMNRREGDDDDDNNHNNSNGDKQGSNNNCHGGALVLPNNLLPTRPNHPSFLGLMNTMPSLGYQWEPNSSAADVNVQWQNHGFFNQTDVHSIDVVPFPSTLALSTGNSTSTTTTSQILVCPPPPGATTQPYFPSSHFATMEMNARQINHYQMLSSSSHQNLLANSLNHPSSQQLMSQSGKAPFSLRIRPKLFHSPNSSESHSQKDQDFPSK* >Glyma19g03786.2 sequence type=predicted peptide gene model=Glyma19g03786 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MINSTKETDFPLKQEGLSSSDHEKAKAPSSSSSSQWLKLKDPRIVRVSRAFGGKDRHSKVCTIRGLRDRRVRLSVPTAIHLYDLQDRLGLNQPSKVVDWLLNAAKHEIDELPPLPIPPGNFTLGYPSLVSCNEVSTSREGSGQNTLLWKPKPGEIMVSDHDKANWMNRREGDDDDDNNHNNSNGDKQGSNNNCHGGALVLPNNLLPTRPNHPSFLGLMNTMPSLGYQWEPNSSAADVNVQWQNHGFFNQTDVHSIDVVPFPSTLALSTGNSTSTTTTSQILVCPPPPGATTQPYFPSSHFATMEMNARQINHYQMLSSSSHQNLLANSLNHPSSQQLMSQSGKAPFSLRIRPKLFHSPNSSESHSQKDQDFPSK*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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