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Report for Sequence Feature Glyma19g03786
Feature Type: gene_model
Chromosome: Gm19
Start: 3797178
stop: 3802157
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma19g03786
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT3G02150 AT
Annotation by Michelle Graham. TAIR10: plastid transcription factor 1 | chr3:391522-392450 FORWARD LENGTH=278
SoyBase E_val: 2.00E-47 ISS
GO:0006355 GO-bp
Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent
SoyBase N/A ISS
GO:0009694 GO-bp
Annotation by Michelle Graham. GO Biological Process: jasmonic acid metabolic process
SoyBase N/A ISS
GO:0009753 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to jasmonic acid stimulus
SoyBase N/A ISS
GO:0009965 GO-bp
Annotation by Michelle Graham. GO Biological Process: leaf morphogenesis
SoyBase N/A ISS
GO:0030154 GO-bp
Annotation by Michelle Graham. GO Biological Process: cell differentiation
SoyBase N/A ISS
GO:0031347 GO-bp
Annotation by Michelle Graham. GO Biological Process: regulation of defense response
SoyBase N/A ISS
GO:0045962 GO-bp
Annotation by Michelle Graham. GO Biological Process: positive regulation of development, heterochronic
SoyBase N/A ISS
GO:0048366 GO-bp
Annotation by Michelle Graham. GO Biological Process: leaf development
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0009507 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: chloroplast
SoyBase N/A ISS
GO:0003700 GO-mf
Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity
SoyBase N/A ISS
GO:0005515 GO-mf
Annotation by Michelle Graham. GO Molecular Function: protein binding
SoyBase N/A ISS
PF03634 PFAM
TCP family transcription factor
JGI ISS
UniRef100_B9SNR1 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Transcription factor, putative n=1 Tax=Ricinus communis RepID=B9SNR1_RICCO
SoyBase E_val: 7.00E-73 ISS
UniRef100_UPI0001B36B59 UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI0001B36B59 related cluster n=1 Tax=unknown RepID=UPI0001B36B59
SoyBase E_val: 0 ISS
Expression Patterns of Glyma19g03786
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma19g03786
Paralog Evidence Comments
Glyma13g06270 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma19g03786 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.19g030900 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma19g03786
Transcripts of Glyma19g03786
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma19g03786.2 sequence type=transcript gene model=Glyma19g03786 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATTAAATTAATAAGTCGTATACCAATACTTTAATCAATTCAATAGTTACCGATCCAATTTTAAAATATTACTAATAGCCAGTTTGGCTTTACATTTTGGATGTGATTTTTAAAAATTAATAGTTATCACTTCCCCATCTTAAATGTGATTCTTCTTTTCTCAAAGTTCTTGAAACATGCTATAAGTAGATACTGAAGTTTCTATATCTGCAATTCTTTGGCTGATATATAGTTATTTAGAGTTTTTGGTTAGTGCATCCAGCTCTTGCCGAACTGACCATGTAATAGGAATCCAAACATGTCTTAGGGTTTTTCATGTCATGTGTATTTTTTATGTGGAATTGAAGCAGCAAAATTAATACATGATTTATATTATTCATACTTTATTTTTTTTATAATATACAAAATCGAATAAATTAACAATATTAACAAAGATCTGCAGTAACAAAAAAAACAATTAACAAAGATCTGGTTTGGTGTATGGCGTATTCCATGACTCCTTAAATTCTCTCTCTTTCTCTCTTAAACCAATAATTGAGTTTGATTAAAAAAAATTATATAAACGTGAAGAGGTCAGTTCTCACTTTCTGCATGTTTCAGGGTTTGTCCATGTTTTAGAATCAATGAAGGAAAAAAGAAAGTGAAAATTTTCTCCATTTACGCTCGTGAGGATTTTAGGGTTTGGAAGTTGGTATATTTGTAACTCCTCCAGTTCCTTGCATTGGTGAAGATCACTAAACCAATTCCAAATTGTCTTAGACAAATGAAGAAGAGAAGAAAACTCGCGTACGTTTCTGTATCTTCTCATTAATTGATCACTTTCTCTTGAAGAAAGGCATGCGATTAATTAATCCACTTGTGGGGGTGTCAGATGTTAGCTTCTAAGTGAAAAATTATCACAAGTTGCCCCCCATGCATATATCTCTCTGCAATAGTACTGTGTGGTCCTAAGTGAGTGTCGTAAAAGATAACATCATATGTTGGTCCCTCACCTATATATGTAGCTTTACATTGTCCGAAGTAGTTATCACACACAAAGACATGACAATTCTCTCGGACTAGACACCACAACTTTTGAATCTTACTTGCTAAAATGACTTATCTAAATGGGCGTGGTCGGTTCCATTCCGGCATCTTCCTTTTCTCCAAGCTGCGGACTCCACTTATTCACCAATTTATTCTATATGCAATCAAATTTCCAAAACCCAAGTTTGAAACCTTGATAAATAGTTGTTCCAGATTGGCATCAAAAGTAAGAAGGTGCACAATTCGACCTTCTCCACTATAATTTGCAATGACATATATCAAACAGTGATACCAACTAGGAGTGACATGCAGCAAATTCACACTGCAAAATTCACAATTAAGAGTTTCATTGTTGAAGGTGGAAGAGAATTCCATGAAGAAAAACCAACAACAACAATGAAAGAAATACTACAATGATCAACAGCACGAAAGAAACTGATTTTCCACTAAAACAAGAAGGTCTTTCTTCAAGTGATCATGAGAAGGCAAAGGCTCCATCGAGCTCATCATCATCACAATGGCTAAAACTGAAGGATCCAAGGATTGTTCGAGTATCAAGAGCCTTTGGAGGAAAAGACAGGCATAGCAAGGTATGCACAATAAGAGGACTAAGAGATAGAAGAGTGAGGCTTTCAGTCCCTACAGCAATTCACCTCTATGATCTCCAAGATAGGCTTGGACTCAACCAACCAAGCAAGGTTGTTGATTGGTTGCTCAATGCAGCAAAACATGAAATTGATGAATTGCCACCACTTCCAATTCCTCCAGGTAACTTCACCCTTGGTTATCCCTCTCTTGTTTCTTGTAATGAAGTTAGCACCTCTCGTGAAGGTTCAGGCCAAAACACTTTATTATGGAAACCAAAGCCAGGAGAAATAATGGTTAGTGATCATGATAAGGCAAATTGGATGAATAGAAGAGAAGGAGATGATGATGATGATAATAATCATAATAATAGTAATGGTGATAAACAAGGAAGCAATAATAATTGTCATGGTGGTGCACTTGTTTTGCCAAATAATCTCTTGCCAACAAGACCAAACCATCCTTCTTTTTTGGGTTTGATGAACACTATGCCATCACTTGGTTACCAATGGGAACCTAATTCTTCAGCTGCTGATGTTAATGTTCAATGGCAAAACCATGGATTTTTTAACCAAACAGATGTACACAGCATCGATGTGGTTCCATTTCCGTCAACACTGGCTCTATCAACTGGGAATAGTACTAGTACTACTACTACTTCTCAGATTTTGGTGTGTCCTCCTCCTCCGGGAGCAACAACACAGCCATATTTTCCTTCTTCACATTTTGCAACAATGGAGATGAATGCAAGGCAAATCAACCACTATCAGATGCTGAGTTCAAGTTCTCATCAAAATCTCTTGGCAAATTCTCTCAATCATCCATCATCACAGCAACTCATGAGCCAATCCGGGAAAGCACCATTCAGCTTGCGAATTAGGCCTAAACTTTTCCATTCTCCTAATAGCAGTGAAAGCCATTCCCAAAAAGATCAGGATTTCCCTTCCAAGTGATGCACAAATAGAGCAAAATAAAGTTGTCAAAATTCTTCTTCTCCTCACAAATTATGCATGGATTGATATCTTGAGGGCTGTGTGGGAATTAGTTGCAAGACATATTATTCAACGTTTTGGGGTTTGAATAAACATTCCGTTTTTGTCAAAGTTATGTTTGGTTTTATGATTTTCCATTCAGTTTGATCTATATGGATATGCCATGCAAAGGTCTACAAAAGAATGGTTTTCTTTTCAAGGGTAAGAGCTTTTTCCTGAAGTGATGATGTGATTGATACACTAAAGAGAACGCATGCTCAGATAAGTTCACACTCTCTTCTATGCATTGAGAAAGGTTGGAAGGTGGAATAATAATATTATCATTTTGATAGTGCGTTTTGGATTTGTTTTTGTTTTGGTTAAGTAAACATCTTATGTGTTTGAATGAGACAGAATTTCTCAGAGTCCTATGTTATATACTATTTGTTAGTTATTAATTACTTTTTTTTATTAAAGAATTCATGTTTTATTCTTTAATTGTGTTTGTATATATTCCATGCATGAGA
Coding sequences of Glyma19g03786
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma19g03786.1 sequence type=CDS gene model=Glyma19g03786 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGATCAACAGCACGAAAGAAACTGATTTTCCACTAAAACAAGAAGGTCTTTCTTCAAGTGATCATGAGAAGGCAAAGGCTCCATCGAGCTCATCATCATCACAATGGCTAAAACTGAAGGATCCAAGGATTGTTCGAGTATCAAGAGCCTTTGGAGGAAAAGACAGGCATAGCAAGGTATGCACAATAAGAGGACTAAGAGATAGAAGAGTGAGGCTTTCAGTCCCTACAGCAATTCACCTCTATGATCTCCAAGATAGGCTTGGACTCAACCAACCAAGCAAGGTTGTTGATTGGTTGCTCAATGCAGCAAAACATGAAATTGATGAATTGCCACCACTTCCAATTCCTCCAGGTAACTTCACCCTTGGTTATCCCTCTCTTGTTTCTTGTAATGAAGTTAGCACCTCTCGTGAAGGTTCAGGCCAAAACACTTTATTATGGAAACCAAAGCCAGGAGAAATAATGGTTAGTGATCATGATAAGGCAAATTGGATGAATAGAAGAGAAGGAGATGATGATGATGATAATAATCATAATAATAGTAATGGTGATAAACAAGGAAGCAATAATAATTGTCATGGTGGTGCACTTGTTTTGCCAAATAATCTCTTGCCAACAAGACCAAACCATCCTTCTTTTTTGGGTTTGATGAACACTATGCCATCACTTGGTTACCAATGGGAACCTAATTCTTCAGCTGCTGATGTTAATGTTCAATGGCAAAACCATGGATTTTTTAACCAAACAGATGTACACAGCATCGATGTGGTTCCATTTCCGTCAACACTGGCTCTATCAACTGGGAATAGTACTAGTACTACTACTACTTCTCAGATTTTGGTGTGTCCTCCTCCTCCGGGAGCAACAACACAGCCATATTTTCCTTCTTCACATTTTGCAACAATGGAGATGAATGCAAGGCAAATCAACCACTATCAGATGCTGAGTTCAAGTTCTCATCAAAATCTCTTGGCAAATTCTCTCAATCATCCATCATCACAGCAACTCATGAGCCAATCCGGGAAAGCACCATTCAGCTTGCGAATTAGGCCTAAACTTTTCCATTCTCCTAATAGCAGTGAAAGCCATTCCCAAAAAGATCAGGATTTCCCTTCCAAGTGA
>Glyma19g03786.2 sequence type=CDS gene model=Glyma19g03786 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGATCAACAGCACGAAAGAAACTGATTTTCCACTAAAACAAGAAGGTCTTTCTTCAAGTGATCATGAGAAGGCAAAGGCTCCATCGAGCTCATCATCATCACAATGGCTAAAACTGAAGGATCCAAGGATTGTTCGAGTATCAAGAGCCTTTGGAGGAAAAGACAGGCATAGCAAGGTATGCACAATAAGAGGACTAAGAGATAGAAGAGTGAGGCTTTCAGTCCCTACAGCAATTCACCTCTATGATCTCCAAGATAGGCTTGGACTCAACCAACCAAGCAAGGTTGTTGATTGGTTGCTCAATGCAGCAAAACATGAAATTGATGAATTGCCACCACTTCCAATTCCTCCAGGTAACTTCACCCTTGGTTATCCCTCTCTTGTTTCTTGTAATGAAGTTAGCACCTCTCGTGAAGGTTCAGGCCAAAACACTTTATTATGGAAACCAAAGCCAGGAGAAATAATGGTTAGTGATCATGATAAGGCAAATTGGATGAATAGAAGAGAAGGAGATGATGATGATGATAATAATCATAATAATAGTAATGGTGATAAACAAGGAAGCAATAATAATTGTCATGGTGGTGCACTTGTTTTGCCAAATAATCTCTTGCCAACAAGACCAAACCATCCTTCTTTTTTGGGTTTGATGAACACTATGCCATCACTTGGTTACCAATGGGAACCTAATTCTTCAGCTGCTGATGTTAATGTTCAATGGCAAAACCATGGATTTTTTAACCAAACAGATGTACACAGCATCGATGTGGTTCCATTTCCGTCAACACTGGCTCTATCAACTGGGAATAGTACTAGTACTACTACTACTTCTCAGATTTTGGTGTGTCCTCCTCCTCCGGGAGCAACAACACAGCCATATTTTCCTTCTTCACATTTTGCAACAATGGAGATGAATGCAAGGCAAATCAACCACTATCAGATGCTGAGTTCAAGTTCTCATCAAAATCTCTTGGCAAATTCTCTCAATCATCCATCATCACAGCAACTCATGAGCCAATCCGGGAAAGCACCATTCAGCTTGCGAATTAGGCCTAAACTTTTCCATTCTCCTAATAGCAGTGAAAGCCATTCCCAAAAAGATCAGGATTTCCCTTCCAAGTGA
Predicted protein sequences of Glyma19g03786
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma19g03786.1 sequence type=predicted peptide gene model=Glyma19g03786 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MINSTKETDFPLKQEGLSSSDHEKAKAPSSSSSSQWLKLKDPRIVRVSRAFGGKDRHSKVCTIRGLRDRRVRLSVPTAIHLYDLQDRLGLNQPSKVVDWLLNAAKHEIDELPPLPIPPGNFTLGYPSLVSCNEVSTSREGSGQNTLLWKPKPGEIMVSDHDKANWMNRREGDDDDDNNHNNSNGDKQGSNNNCHGGALVLPNNLLPTRPNHPSFLGLMNTMPSLGYQWEPNSSAADVNVQWQNHGFFNQTDVHSIDVVPFPSTLALSTGNSTSTTTTSQILVCPPPPGATTQPYFPSSHFATMEMNARQINHYQMLSSSSHQNLLANSLNHPSSQQLMSQSGKAPFSLRIRPKLFHSPNSSESHSQKDQDFPSK*
>Glyma19g03786.2 sequence type=predicted peptide gene model=Glyma19g03786 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MINSTKETDFPLKQEGLSSSDHEKAKAPSSSSSSQWLKLKDPRIVRVSRAFGGKDRHSKVCTIRGLRDRRVRLSVPTAIHLYDLQDRLGLNQPSKVVDWLLNAAKHEIDELPPLPIPPGNFTLGYPSLVSCNEVSTSREGSGQNTLLWKPKPGEIMVSDHDKANWMNRREGDDDDDNNHNNSNGDKQGSNNNCHGGALVLPNNLLPTRPNHPSFLGLMNTMPSLGYQWEPNSSAADVNVQWQNHGFFNQTDVHSIDVVPFPSTLALSTGNSTSTTTTSQILVCPPPPGATTQPYFPSSHFATMEMNARQINHYQMLSSSSHQNLLANSLNHPSSQQLMSQSGKAPFSLRIRPKLFHSPNSSESHSQKDQDFPSK*