SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G02120 | AT | Annotation by Michelle Graham. TAIR10: hydroxyproline-rich glycoprotein family protein | chr3:377122-377577 FORWARD LENGTH=126 | SoyBase | E_val: 5.00E-19 | ISS |
| GO:0000226 | GO-bp | Annotation by Michelle Graham. GO Biological Process: microtubule cytoskeleton organization | SoyBase | N/A | ISS |
| GO:0000911 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cytokinesis by cell plate formation | SoyBase | N/A | ISS |
| GO:0010583 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to cyclopentenone | SoyBase | N/A | ISS |
| GO:0051329 | GO-bp | Annotation by Michelle Graham. GO Biological Process: interphase of mitotic cell cycle | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| UniRef100_D2DW75 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Hydroxyproline-rich protein n=1 Tax=Phaseolus vulgaris RepID=D2DW75_PHAVU | SoyBase | E_val: 5.00E-59 | ISS |
| UniRef100_UPI000233F48E | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233F48E related cluster n=1 Tax=unknown RepID=UPI000233F48E | SoyBase | E_val: 1.00E-86 | ISS |
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Glyma19g03681 not represented in the dataset |
Glyma19g03681 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma01g21530 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Glyma13g06190 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.19g030100 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma19g03681.1 sequence type=CDS gene model=Glyma19g03681 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAGAAGTATCATTTTTGCTGGTGGCTTTATAGGAAGTCAAAACAGAGTAAGAAGCAAGTTAAGAGAACAAACAATCGCAAGCCTACCACAATTCGACCGTTGCAACCCTTTTTGCTCACATGGTCACTATATCTTCCACCATTTTCATATACTTCTTCCAATGCTCAAACTTCTTGTTCCAATCAACACACGTTTTCCTTGTTCCGTGGTGGCACACACTATAATCTCATGGAAAAGGAAAACATGCTCAAAACGCCTCCAAAAGTTCCAATTCAACCACAAACACCCGAACCTGAATGCAAAACACCAGCTCCAGTTCAACAACAAGACCCCAATGATCATAATAACTCCTCAAATGAATTGCACAAACCTGTTACCCCAAATCGTCTTAGAGTCCCCAAGGCTTTCAAATACCCAGAAAGATATACAAGCCCAACTGATTTGATAATGTCTCCAGTAACCAAAGGCCTTCTTGCCAGAACTAGAAGGGGTGGCGGTGCAGTGTTACCACCTGGTGGTAAAAATCAACCAAAGATTCTAGACATGCCCTTGAAGGATGTTGGTCCTATCCAGAACAAGCTTCCAATGCTGATTGACGAGAAGATCAACTCAGCTTGA
>Glyma19g03681.1 sequence type=predicted peptide gene model=Glyma19g03681 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEKYHFCWWLYRKSKQSKKQVKRTNNRKPTTIRPLQPFLLTWSLYLPPFSYTSSNAQTSCSNQHTFSLFRGGTHYNLMEKENMLKTPPKVPIQPQTPEPECKTPAPVQQQDPNDHNNSSNELHKPVTPNRLRVPKAFKYPERYTSPTDLIMSPVTKGLLARTRRGGGAVLPPGGKNQPKILDMPLKDVGPIQNKLPMLIDEKINSA*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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