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Report for Sequence Feature Glyma19g03563

Feature Type:gene_model
Chromosome:Gm19
Start:3570374
stop:3577489
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma19g03563
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G15540AT Annotation by Michelle Graham. TAIR10: PHD finger family protein | chr5:5047887-5057411 REVERSE LENGTH=1846 SoyBaseE_val: 0ISS
GO:0007062GO-bp Annotation by Michelle Graham. GO Biological Process: sister chromatid cohesion SoyBaseN/AISS
GO:0007131GO-bp Annotation by Michelle Graham. GO Biological Process: reciprocal meiotic recombination SoyBaseN/AISS
GO:0009790GO-bp Annotation by Michelle Graham. GO Biological Process: embryo development SoyBaseN/AISS
GO:0009793GO-bp Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy SoyBaseN/AISS
GO:0009880GO-bp Annotation by Michelle Graham. GO Biological Process: embryonic pattern specification SoyBaseN/AISS
GO:0010072GO-bp Annotation by Michelle Graham. GO Biological Process: primary shoot apical meristem specification SoyBaseN/AISS
GO:0010228GO-bp Annotation by Michelle Graham. GO Biological Process: vegetative to reproductive phase transition of meristem SoyBaseN/AISS
GO:0010431GO-bp Annotation by Michelle Graham. GO Biological Process: seed maturation SoyBaseN/AISS
GO:0016926GO-bp Annotation by Michelle Graham. GO Biological Process: protein desumoylation SoyBaseN/AISS
GO:0033044GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of chromosome organization SoyBaseN/AISS
GO:0034508GO-bp Annotation by Michelle Graham. GO Biological Process: centromere complex assembly SoyBaseN/AISS
GO:0042138GO-bp Annotation by Michelle Graham. GO Biological Process: meiotic DNA double-strand break formation SoyBaseN/AISS
GO:0045132GO-bp Annotation by Michelle Graham. GO Biological Process: meiotic chromosome segregation SoyBaseN/AISS
GO:0045595GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of cell differentiation SoyBaseN/AISS
GO:0048316GO-bp Annotation by Michelle Graham. GO Biological Process: seed development SoyBaseN/AISS
GO:0050665GO-bp Annotation by Michelle Graham. GO Biological Process: hydrogen peroxide biosynthetic process SoyBaseN/AISS
GO:0051177GO-bp Annotation by Michelle Graham. GO Biological Process: meiotic sister chromatid cohesion SoyBaseN/AISS
GO:0051301GO-bp Annotation by Michelle Graham. GO Biological Process: cell division SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0008270GO-mf Annotation by Michelle Graham. GO Molecular Function: zinc ion binding SoyBaseN/AISS
PTHR21704Panther NIPPED-B-LIKE PROTEIN (DELANGIN) SCC2-RELATED JGI ISS
PTHR21704:SF13Panther EMB2773 (EMBRYO DEFECTIVE 2773), BINDING / PROTEIN JGI ISS
UniRef100_G7KMP7UniRef Annotation by Michelle Graham. Most informative UniRef hit: Sister chromatid cohesion n=1 Tax=Medicago truncatula RepID=G7KMP7_MEDTR SoyBaseE_val: 0ISS
UniRef100_I1N6B0UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N6B0_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma19g03563
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma19g03563 not represented in the dataset
Glyma19g03563 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g03563
ParalogEvidenceComments
Glyma13g06105 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g03563 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.19g029100 Wm82.a2.v1IGC As supplied by JGI

References for Glyma19g03563
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma19g03563
>Glyma19g03563.1   sequence type=CDS   gene model=Glyma19g03563   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGTTTCCCTGCCACCTCCGGCGCCGCCGCGCTGGCGTCTTCCGGCCACCGCGGTATCGGTCTCTCCAACACCGTCCACTCCGAGCTCGCCGCGTGCCTCCCGCTGCCGTCCCTCCCGGTCTTCTGCGGCGCCTCCGATCAGGACCTCCGCCTCGTCGACTCGCCGGCGCGCCTCAACCGCGTCGACGTACTCGCGCAGTCCGCCAAGATCGCCGAGCTGCTCCGCCACACCGATGTGTCATACTTGAATTTAAGAGATGAAGCCAAAGGTGTTCCCTATATATATGTTGAGCCTTTAGAACTCCATGATGAAGTTCTCAGGTGCAATCCTGAAGCATTTGAATACAGCACTGCAGGTCATGTCAAGGAGCAGATCTCTGGTAGTGCCGCAGTACCTGAAAAAAGGCAATCAGAATCAAGTTTTCCTATCCAAAGTCAGACTCAAAAAGACTATAATGCAATACATAGTCGCCAGCTTGATAATTTTTCCACAAATGATATCTCTTCGTTGTCTTCTAAAAAATTAAAAGTAAAAAAGAAAGGTGGTGATGGAATATCCTTAGCACCTGATTCTGCTGAGCTTCAAGGTACCTACATTGAAAGGTTTCGTGAGTTTTTGGAGGACTTGTGCAACAATGCTGAATTTCATAGTGATGATCGAGATGAAGCAGAATGGTTGCCATTGCCTCTTACAGATCTTAGATTACTTGTCAATGAGATAACATCTATTCGTGAAAAGAAACTTCTGCATTTGGTTCCTGTAGAAGTCCTTGTTAGACTATTAAAGGTTCTAGATCATCAGATACATAGAGCAGAAGGCCTGTCAATTGAGGAATGCGATAATTCAGATTCAGAATTAGTTTCATCTGTTTTAATTGCATTGGAGTCCATTCATGCTGCACTAGCAGTGATGGCTCACACTGATATGCCAAAGCAACTCTATAACGAAGAGATCATTGAGCGAATTCTGGAGTTTTCCAGGCGTCAAATAATGGATGTTATGTGTGCATGTGATCCATCATACCGTGCGTTACATAGACCTAGTGAGAACACTGCATTTGAAGTTGATGATTATGAAGATAATGATGCTGAATTTGGTTCAGCCAGCAAGAAACGGCGAACTAGCAAGACTTCGAAGTTGAAGAAATCAGCATCAAGCAGGCTCTCTACTGCTGTAAATACTATTCTTCAGAAGTTGTGCACTGTTCTTGGGCTACTCAAAGATTTGTTGTTAATAGAGAGGTTATCAGATAGTTGCATACTACAACTTGTAAAAACAAGCATTACAACATTTTTGGTTGATAATATCCAGCTTTTGCAATTGAAGGCAATCAGTTTACTCAGTGCGATATTCTATTTATACACACAACATCGCAATTATGTGATAGATGAAGTGGTTCAACTTCTGTGGAAATTACCATATTCAAAACGAGCTTTAAGATCTTATCACGTACGCGAGGAAGAGCAAAGGCAGATCCAAATGGTTACTGCTTTGCTGATTCAGTTGATTCATTGTAGTGCTAACCTCCCTGATGCTTTAAGAATGGCTTCAAATGGTAATGCTGTATTAGAAGCCTCTGTTGATGTTAGTTATCCAATTAAATGCCATGAGGCAGCGACAGAATCCTGCTGTCTGTTTTGGAGCCGGGTACTTCAGCGGTTTGCAAGTGTGAAGACTCATGATGCTTCTGAGCTGAAATCCATTATAGAGAATCTTGTTACAGATTTACTGACAACTCTAAATTTACCTGAATATCCTGCTTCAGCTCCTATTCTAGAGGTTCTATGTGTCCTACTACTTCAGAATGCCGGGCCAAAATCTAAGGATGTCTCTGCACGTTCCCTGGCGATTGATATTCTTGGTACAATTGCTGCAAGGTTGAAGCGTGATGCTTTGGTTTGTAGCCAGGAAAATTTCTGGATACTTCAGGATTTACTTAGTCAGGATGCTGCTGCTCAGCATCATCCAAAAGATACATGTTGTGTCTGTTTGGGAGGAAGGGTAGAAAATTTGTTCATATGTCATGGTTGCCAGAGGCTTTTTCATGCTGATTGCCTGGGCATTAAAGAACATGAAGTTTCCAGTCGAAAATGGTCTTGCCAGACATGCATCTGTCATAAGCAACTACTTGTATTACAATCATGTTGCAATTCCCAGCAAAAGAATGATGTGAAAAAGAATCATGATACAGATTCTGAAGTTTCTAAGCAAGAGATTGTTCAACAGTTACTTCTGAATTACCTTCAAGACGTTACTTCAGCTGATGATCTGCATCTTTTCATCTGCTGGTTTTATCTCTGCTTGTGGTACAAAGATGATTCAAATTGTCAGCAGAAGTCCAGTTACTACCTTGCTAGAATGAAATCAAAAATCATTGTACGGGATTCTAGTACTGTGTCTTCTATATTGACTAGGGATTCAGTCAAGAAGATTACTTCAGCTTTGGGCCAAAACAGTTCATTTTGCCGAGGGTTTGATAAGATTCTTCACACGCTTCTGGCAAGCTTGAGGGAGAACTCTCCTGTTATTAGGGCTAAGGCTTTAAAAGCAGTTAGTATCATTGTAGAGGCAGATCCAGAGGTATTGGGTGATAAGCGAGTACAATCAGCTGTTGAAGGAAGGTTTTGTGATTCTGCAATATCTGTTCGAGAAGCAGCATTGGAACTTGTTGGTAGGCATATAGCTTCACATCCAGGTGTGGGTTTTAAGTATTTTGAGAAGATTGCTGAGAGAATCAAAGATACTGGAGTAAGTGTTCGGAAACGAGCTATAAAAATCATTCGAGATATGTGCACTTCAAATGCCAACTTCTCTGGATTTACAAGAGCTTGCACAGAGATAATTTCACGTGTTAGTGATGATGAAGCAAGCATCCAGGTATTTTAA
Predicted protein sequences of Glyma19g03563
>Glyma19g03563.1   sequence type=predicted peptide   gene model=Glyma19g03563   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSFPATSGAAALASSGHRGIGLSNTVHSELAACLPLPSLPVFCGASDQDLRLVDSPARLNRVDVLAQSAKIAELLRHTDVSYLNLRDEAKGVPYIYVEPLELHDEVLRCNPEAFEYSTAGHVKEQISGSAAVPEKRQSESSFPIQSQTQKDYNAIHSRQLDNFSTNDISSLSSKKLKVKKKGGDGISLAPDSAELQGTYIERFREFLEDLCNNAEFHSDDRDEAEWLPLPLTDLRLLVNEITSIREKKLLHLVPVEVLVRLLKVLDHQIHRAEGLSIEECDNSDSELVSSVLIALESIHAALAVMAHTDMPKQLYNEEIIERILEFSRRQIMDVMCACDPSYRALHRPSENTAFEVDDYEDNDAEFGSASKKRRTSKTSKLKKSASSRLSTAVNTILQKLCTVLGLLKDLLLIERLSDSCILQLVKTSITTFLVDNIQLLQLKAISLLSAIFYLYTQHRNYVIDEVVQLLWKLPYSKRALRSYHVREEEQRQIQMVTALLIQLIHCSANLPDALRMASNGNAVLEASVDVSYPIKCHEAATESCCLFWSRVLQRFASVKTHDASELKSIIENLVTDLLTTLNLPEYPASAPILEVLCVLLLQNAGPKSKDVSARSLAIDILGTIAARLKRDALVCSQENFWILQDLLSQDAAAQHHPKDTCCVCLGGRVENLFICHGCQRLFHADCLGIKEHEVSSRKWSCQTCICHKQLLVLQSCCNSQQKNDVKKNHDTDSEVSKQEIVQQLLLNYLQDVTSADDLHLFICWFYLCLWYKDDSNCQQKSSYYLARMKSKIIVRDSSTVSSILTRDSVKKITSALGQNSSFCRGFDKILHTLLASLRENSPVIRAKALKAVSIIVEADPEVLGDKRVQSAVEGRFCDSAISVREAALELVGRHIASHPGVGFKYFEKIAERIKDTGVSVRKRAIKIIRDMCTSNANFSGFTRACTEIISRVSDDEASIQVF*






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