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SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G15540 | AT | Annotation by Michelle Graham. TAIR10: PHD finger family protein | chr5:5047887-5057411 REVERSE LENGTH=1844 | SoyBase | E_val: 0 | ISS |
| GO:0007062 | GO-bp | Annotation by Michelle Graham. GO Biological Process: sister chromatid cohesion | SoyBase | N/A | ISS |
| GO:0007131 | GO-bp | Annotation by Michelle Graham. GO Biological Process: reciprocal meiotic recombination | SoyBase | N/A | ISS |
| GO:0009790 | GO-bp | Annotation by Michelle Graham. GO Biological Process: embryo development | SoyBase | N/A | ISS |
| GO:0009793 | GO-bp | Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy | SoyBase | N/A | ISS |
| GO:0009880 | GO-bp | Annotation by Michelle Graham. GO Biological Process: embryonic pattern specification | SoyBase | N/A | ISS |
| GO:0010072 | GO-bp | Annotation by Michelle Graham. GO Biological Process: primary shoot apical meristem specification | SoyBase | N/A | ISS |
| GO:0010228 | GO-bp | Annotation by Michelle Graham. GO Biological Process: vegetative to reproductive phase transition of meristem | SoyBase | N/A | ISS |
| GO:0010431 | GO-bp | Annotation by Michelle Graham. GO Biological Process: seed maturation | SoyBase | N/A | ISS |
| GO:0016926 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein desumoylation | SoyBase | N/A | ISS |
| GO:0033044 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of chromosome organization | SoyBase | N/A | ISS |
| GO:0034508 | GO-bp | Annotation by Michelle Graham. GO Biological Process: centromere complex assembly | SoyBase | N/A | ISS |
| GO:0042138 | GO-bp | Annotation by Michelle Graham. GO Biological Process: meiotic DNA double-strand break formation | SoyBase | N/A | ISS |
| GO:0045132 | GO-bp | Annotation by Michelle Graham. GO Biological Process: meiotic chromosome segregation | SoyBase | N/A | ISS |
| GO:0045595 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of cell differentiation | SoyBase | N/A | ISS |
| GO:0048316 | GO-bp | Annotation by Michelle Graham. GO Biological Process: seed development | SoyBase | N/A | ISS |
| GO:0050665 | GO-bp | Annotation by Michelle Graham. GO Biological Process: hydrogen peroxide biosynthetic process | SoyBase | N/A | ISS |
| GO:0051177 | GO-bp | Annotation by Michelle Graham. GO Biological Process: meiotic sister chromatid cohesion | SoyBase | N/A | ISS |
| GO:0051301 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell division | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0008270 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: zinc ion binding | SoyBase | N/A | ISS |
| PTHR21704 | Panther | NIPPED-B-LIKE PROTEIN (DELANGIN) SCC2-RELATED | JGI | ISS | |
| PTHR21704:SF13 | Panther | EMB2773 (EMBRYO DEFECTIVE 2773), BINDING / PROTEIN | JGI | ISS | |
| UniRef100_G7KMP6 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Sister chromatid cohesion n=1 Tax=Medicago truncatula RepID=G7KMP6_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1N6B0 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N6B0_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma19g03556 not represented in the dataset |
Glyma19g03556 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.19g029000 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma19g03556.2 sequence type=transcript gene model=Glyma19g03556 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TATAGTACATCTGTTATTGGACTTTATTCACCTGCAATTCATAGCAATGTTTTTCAACTTATTGAAAATATGGCCATACTCTTATGTCTTGGACAATCCTCTCGCCTTCTAACGTTTGGGGTGGAGTTAGACCTACTTCATTTCTAATGTTTCTTTTTACAGAGAAGGGTGCTAGATTGGTACTTTTTTTGTATTTACATCAAGTGGAGTTGATTTCAGTACTCAATTATTGTTTATTAAAAGTTTGTAGGATTTTGCTAAATGATGCATGAGGTAGTTTATGTATTATGAACTCTTGTTATGTGGACTATACATCTGATAAGTGGTAACTAAATCAGTGTCAAGGAAAGTGGCTATTTCTTGTAGATTATAGCTTGTGTAGAGAACTATGGTTTTGAATATTTAGCTTGGACATGAACATTATAATGTAATTTTGTGTTGTGGAGTGTTTATACTTATCTTTTATTTAGCTTGATGATGAAGGTTGTTTTATTTTTATATGGGATGTAAAATAAAAATTGGCTTCCCTGCTATTTACAGAAAGTTGGACGATCTCTCTTCTGTCTTGGGTTGCTAATCCGTTATGGCAATAGATTGTTAGCAAGCTCCAGTAATAAACTCATTGATGTTGGAAGCAGTGTCAAATTGTTTATGAAGTATCTCTGTGTGGAGGATTTTGTTGTCAAGGTTAGATCATTGCAGGCACTAGGGTTTGTACTAATTGCTAGGCCTGAATATATGCTGGAAAATGATGTTGGAAAAGTACTGGAGGAAACATTATCCTCTGCATCTGATACTCGCCTTAAGATTCAAGGATTGCAAAACATGTTCGAGTATCTTCTAGATGCTGAAAGTCAAATGGGAACGGATAAAGATAATGAAAATGTTGCTGGTTACTCAGTTGGAGCCGGGAAGAGTGTACCTGTTGCTGCTGGTGCTGGGGATACTAACATATGTGGGGGTATAGTTCAGTTGTATTGGGATAATATTTTGGGCAGATGTTTGGATTTCAGTGAACATGTTCGTCAATCAGCCCTGAAGATTGTTGAAGTTGTGCTGCGCCAAGGTCTTGTTCATCCAATCACCTGTGTTCCATACCTTATAGCCCTTGAAACGGATCCTTTGGAGTCAAATTCAAAGTTGGCTCATCATCTTCTGATGAATATGAATGAAAAGTACCCTGCATTTTTTGAAAGCCGCTTGGGTGATGGACTTCAAATGTCATTTATGTTTATGCAATCTATTTGTGGCAGTTCTGAAAATGTTGATCATAAGATTCAATCTAAGACCTCTACTTCTGGAAAAGGGAAGCCCGAGGCTGGCTCCCTTGCTCAAGCTAAACTTGGGGTTTCTCGAATTTACAAGCTCATCCGAGGGAACCGGGTGTCAAGGAACAAATTTTTGTCCTCGATCGTGCGGAAATTTGATAATCCAAGATGGAATAAATTACTAATAGCTTTCTTAATATACTGCACGGAAGTCCTAGCATTGCTGCCATTCATTTCACCTGACGAGCCCCTTTATTTAATCTATGCTATCAATCGAGTAGTTCAAGTAAGGGCTGGACCACTAGAAGCGAACTTTAAAGCCTGGACTTCAAGCATTTCACGTCATTGCACACCTCATGGGAATGGAATGTATCAACAGGGGACCGATGAGCCTACTGTTGCAAGCCAAGTAATGCCATTGGATTTGAATGGAACATTTCAGCAAAATGTAGATCTTCAGCCAAATATGAATGACATGAGAACCCTGGATTTAAATGGATCAAATCATCAACTGACAGATTATCCTTTATCGTATAATGGTAGCTCAGAAGCAAATCTGCATTCTGTGGGTTACACAGATCCTTTTTCCTTCGCAAAAGATGATCTGGAGAAAGTTCAGGCCGACTGTTTATCAGCAATTGCATTGCAGCTTCTTTTGAAGCTAAAGAGACACCTAAAAATCATGTATAGTCTTGATGATGCCCGTTGTCAGGCTTATTCTCCTACCGAACAACCGAAACCTGGAGAGGTTATCTCCAGACAGAATATTGCTTTTAATATTGGTGATTCACAGTTCAGTTTGCCTACAAGTCCGCAAGAATTGATACAAAGATATCAGGAATTTAAACATGCCTTGAGGGAAGACACTGTGGACTATTCACATTACACTGCAAATATAAAACGAAAGCGACCTACAACTACGCCAAGAAGAGTTCAAGTTCGGAAACCTGTATACGTGGCAGGTGGGTACGACAACGGGGATGATGATGAGGATTATACTGGCGGAAGTGCGACACGCAAGATAAGTTTTAGTGGCCGCAGGAGTAGCCTTAAGAACTCAAGGCAATATGGATTGATGTAAAGTACATGATAGATAGGCTAACTTGTACATTAAATAGGAAGGAAAAGAAAAAAAATACAGAATAGGATGAGAACCAACTGAATAGGGGTAAAGGAAACAGGATGTAGGGAAGCATGGGCCTGGATGGAATACTCCTTGCCTTCTTAGATGACTATGATTTTTGTCTGTTTCCTTCTGTAATTTGCATTATAATATAGTGGCTGCATTCTTTTGTTGATGAAAATTTATCTTAGCTATCTAAATGTCAAATTTGAT
>Glyma19g03556.1 sequence type=CDS gene model=Glyma19g03556 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCTTGGGAAGTTGCCTCCGAGTATTGTTGGGGAACTTGAGCAAGATTTGAAACAGATGATTGTCCGGCATTCTTTCTTGACAGTTGTCCATGCCTGTATCAAATGCCTCTGCTCTGTGAGTAAGATGTCTGGAAAAGGGGCTGCTGTAGTTGAACAACTTATTCAGTTTTTCTTCAAATGTTTGGATACTCAGGCAGTTGATAACAAGCAGAAAGTTGGACGATCTCTCTTCTGTCTTGGGTTGCTAATCCGTTATGGCAATAGATTGTTAGCAAGCTCCAGTAATAAACTCATTGATGTTGGAAGCAGTGTCAAATTGTTTATGAAGTATCTCTGTGTGGAGGATTTTGTTGTCAAGGTTAGATCATTGCAGGCACTAGGGTTTGTACTAATTGCTAGGCCTGAATATATGCTGGAAAATGATGTTGGAAAAGTACTGGAGGAAACATTATCCTCTGCATCTGATACTCGCCTTAAGATTCAAGGATTGCAAAACATGTTCGAGTATCTTCTAGATGCTGAAAGTCAAATGGGAACGGATAAAGATAATGAAAATGTTGCTGGTTACTCAGTTGGAGCCGGGAAGAGTGTACCTGTTGCTGCTGGTGCTGGGGATACTAACATATGTGGGGGTATAGTTCAGTTGTATTGGGATAATATTTTGGGCAGATGTTTGGATTTCAGTGAACATGTTCGTCAATCAGCCCTGAAGATTGTTGAAGTTGTGCTGCGCCAAGGTCTTGTTCATCCAATCACCTGTGTTCCATACCTTATAGCCCTTGAAACGGATCCTTTGGAGTCAAATTCAAAGTTGGCTCATCATCTTCTGATGAATATGAATGAAAAGTACCCTGCATTTTTTGAAAGCCGCTTGGGTGATGGACTTCAAATGTCATTTATGTTTATGCAATCTATTTGTGGCAGTTCTGAAAATGTTGATCATAAGATTCAATCTAAGACCTCTACTTCTGGAAAAGGGAAGCCCGAGGCTGGCTCCCTTGCTCAAGCTAAACTTGGGGTTTCTCGAATTTACAAGCTCATCCGAGGGAACCGGGTGTCAAGGAACAAATTTTTGTCCTCGATCGTGCGGAAATTTGATAATCCAAGATGGAATAAATTACTAATAGCTTTCTTAATATACTGCACGGAAGTCCTAGCATTGCTGCCATTCATTTCACCTGACGAGCCCCTTTATTTAATCTATGCTATCAATCGAGTAGTTCAAGTAAGGGCTGGACCACTAGAAGCGAACTTTAAAGCCTGGACTTCAAGCATTTCACGTCATTGCACACCTCATGGGAATGGAATGTATCAACAGGGGACCGATGAGCCTACTGTTGCAAGCCAAGTAATGCCATTGGATTTGAATGGAACATTTCAGCAAAATGTAGATCTTCAGCCAAATATGAATGACATGAGAACCCTGGATTTAAATGGATCAAATCATCAACTGACAGATTATCCTTTATCGTATAATGGTAGCTCAGAAGCAAATCTGCATTCTGTGGGTTACACAGATCCTTTTTCCTTCGCAAAAGATGATCTGGAGAAAGTTCAGGCCGACTGTTTATCAGCAATTGCATTGCAGCTTCTTTTGAAGCTAAAGAGACACCTAAAAATCATGTATAGTCTTGATGATGCCCGTTGTCAGGCTTATTCTCCTACCGAACAACCGAAACCTGGAGAGGTTATCTCCAGACAGAATATTGCTTTTAATATTGGTGATTCACAGTTCAGTTTGCCTACAAGTCCGCAAGAATTGATACAAAGATATCAGGAATTTAAACATGCCTTGAGGGAAGACACTGTGGACTATTCACATTACACTGCAAATATAAAACGAAAGCGACCTACAACTACGCCAAGAAGAGTTCAAGTTCGGAAACCTGTATACGTGGCAGGTGGGTACGACAACGGGGATGATGATGAGGATTATACTGGCGGAAGTGCGACACGCAAGATAAGTTTTAGTGGCCGCAGGAGTAGCCTTAAGAACTCAAGGCAATATGGATTGATGTAA >Glyma19g03556.2 sequence type=CDS gene model=Glyma19g03556 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAAGTATCTCTGTGTGGAGGATTTTGTTGTCAAGGTTAGATCATTGCAGGCACTAGGGTTTGTACTAATTGCTAGGCCTGAATATATGCTGGAAAATGATGTTGGAAAAGTACTGGAGGAAACATTATCCTCTGCATCTGATACTCGCCTTAAGATTCAAGGATTGCAAAACATGTTCGAGTATCTTCTAGATGCTGAAAGTCAAATGGGAACGGATAAAGATAATGAAAATGTTGCTGGTTACTCAGTTGGAGCCGGGAAGAGTGTACCTGTTGCTGCTGGTGCTGGGGATACTAACATATGTGGGGGTATAGTTCAGTTGTATTGGGATAATATTTTGGGCAGATGTTTGGATTTCAGTGAACATGTTCGTCAATCAGCCCTGAAGATTGTTGAAGTTGTGCTGCGCCAAGGTCTTGTTCATCCAATCACCTGTGTTCCATACCTTATAGCCCTTGAAACGGATCCTTTGGAGTCAAATTCAAAGTTGGCTCATCATCTTCTGATGAATATGAATGAAAAGTACCCTGCATTTTTTGAAAGCCGCTTGGGTGATGGACTTCAAATGTCATTTATGTTTATGCAATCTATTTGTGGCAGTTCTGAAAATGTTGATCATAAGATTCAATCTAAGACCTCTACTTCTGGAAAAGGGAAGCCCGAGGCTGGCTCCCTTGCTCAAGCTAAACTTGGGGTTTCTCGAATTTACAAGCTCATCCGAGGGAACCGGGTGTCAAGGAACAAATTTTTGTCCTCGATCGTGCGGAAATTTGATAATCCAAGATGGAATAAATTACTAATAGCTTTCTTAATATACTGCACGGAAGTCCTAGCATTGCTGCCATTCATTTCACCTGACGAGCCCCTTTATTTAATCTATGCTATCAATCGAGTAGTTCAAGTAAGGGCTGGACCACTAGAAGCGAACTTTAAAGCCTGGACTTCAAGCATTTCACGTCATTGCACACCTCATGGGAATGGAATGTATCAACAGGGGACCGATGAGCCTACTGTTGCAAGCCAAGTAATGCCATTGGATTTGAATGGAACATTTCAGCAAAATGTAGATCTTCAGCCAAATATGAATGACATGAGAACCCTGGATTTAAATGGATCAAATCATCAACTGACAGATTATCCTTTATCGTATAATGGTAGCTCAGAAGCAAATCTGCATTCTGTGGGTTACACAGATCCTTTTTCCTTCGCAAAAGATGATCTGGAGAAAGTTCAGGCCGACTGTTTATCAGCAATTGCATTGCAGCTTCTTTTGAAGCTAAAGAGACACCTAAAAATCATGTATAGTCTTGATGATGCCCGTTGTCAGGCTTATTCTCCTACCGAACAACCGAAACCTGGAGAGGTTATCTCCAGACAGAATATTGCTTTTAATATTGGTGATTCACAGTTCAGTTTGCCTACAAGTCCGCAAGAATTGATACAAAGATATCAGGAATTTAAACATGCCTTGAGGGAAGACACTGTGGACTATTCACATTACACTGCAAATATAAAACGAAAGCGACCTACAACTACGCCAAGAAGAGTTCAAGTTCGGAAACCTGTATACGTGGCAGGTGGGTACGACAACGGGGATGATGATGAGGATTATACTGGCGGAAGTGCGACACGCAAGATAAGTTTTAGTGGCCGCAGGAGTAGCCTTAAGAACTCAAGGCAATATGGATTGATGTAA
>Glyma19g03556.1 sequence type=predicted peptide gene model=Glyma19g03556 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MLGKLPPSIVGELEQDLKQMIVRHSFLTVVHACIKCLCSVSKMSGKGAAVVEQLIQFFFKCLDTQAVDNKQKVGRSLFCLGLLIRYGNRLLASSSNKLIDVGSSVKLFMKYLCVEDFVVKVRSLQALGFVLIARPEYMLENDVGKVLEETLSSASDTRLKIQGLQNMFEYLLDAESQMGTDKDNENVAGYSVGAGKSVPVAAGAGDTNICGGIVQLYWDNILGRCLDFSEHVRQSALKIVEVVLRQGLVHPITCVPYLIALETDPLESNSKLAHHLLMNMNEKYPAFFESRLGDGLQMSFMFMQSICGSSENVDHKIQSKTSTSGKGKPEAGSLAQAKLGVSRIYKLIRGNRVSRNKFLSSIVRKFDNPRWNKLLIAFLIYCTEVLALLPFISPDEPLYLIYAINRVVQVRAGPLEANFKAWTSSISRHCTPHGNGMYQQGTDEPTVASQVMPLDLNGTFQQNVDLQPNMNDMRTLDLNGSNHQLTDYPLSYNGSSEANLHSVGYTDPFSFAKDDLEKVQADCLSAIALQLLLKLKRHLKIMYSLDDARCQAYSPTEQPKPGEVISRQNIAFNIGDSQFSLPTSPQELIQRYQEFKHALREDTVDYSHYTANIKRKRPTTTPRRVQVRKPVYVAGGYDNGDDDEDYTGGSATRKISFSGRRSSLKNSRQYGLM* >Glyma19g03556.2 sequence type=predicted peptide gene model=Glyma19g03556 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MKYLCVEDFVVKVRSLQALGFVLIARPEYMLENDVGKVLEETLSSASDTRLKIQGLQNMFEYLLDAESQMGTDKDNENVAGYSVGAGKSVPVAAGAGDTNICGGIVQLYWDNILGRCLDFSEHVRQSALKIVEVVLRQGLVHPITCVPYLIALETDPLESNSKLAHHLLMNMNEKYPAFFESRLGDGLQMSFMFMQSICGSSENVDHKIQSKTSTSGKGKPEAGSLAQAKLGVSRIYKLIRGNRVSRNKFLSSIVRKFDNPRWNKLLIAFLIYCTEVLALLPFISPDEPLYLIYAINRVVQVRAGPLEANFKAWTSSISRHCTPHGNGMYQQGTDEPTVASQVMPLDLNGTFQQNVDLQPNMNDMRTLDLNGSNHQLTDYPLSYNGSSEANLHSVGYTDPFSFAKDDLEKVQADCLSAIALQLLLKLKRHLKIMYSLDDARCQAYSPTEQPKPGEVISRQNIAFNIGDSQFSLPTSPQELIQRYQEFKHALREDTVDYSHYTANIKRKRPTTTPRRVQVRKPVYVAGGYDNGDDDEDYTGGSATRKISFSGRRSSLKNSRQYGLM*
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