Glyma19g03530 - SoyBase

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Report for Sequence Feature Glyma19g03530

Feature Type:	gene_model
Chromosome:	Gm19
Start:	3547351
stop:	3551580
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g03530

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G15530	AT	Annotation by Michelle Graham. TAIR10: biotin carboxyl carrier protein 2 \| chr5:5038955-5040437 FORWARD LENGTH=255	SoyBase	E_val: 1.00E-71	ISS
GO:0006633	GO-bp	Annotation by Michelle Graham. GO Biological Process: fatty acid biosynthetic process	SoyBase	N/A	ISS
GO:0009317	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: acetyl-CoA carboxylase complex	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009570	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma	SoyBase	N/A	ISS
GO:0009941	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope	SoyBase	N/A	ISS
GO:0003989	GO-mf	Annotation by Michelle Graham. GO Molecular Function: acetyl-CoA carboxylase activity	SoyBase	N/A	ISS
GO:0009374	GO-mf	Annotation by Michelle Graham. GO Molecular Function: biotin binding	SoyBase	N/A	ISS
PTHR23151	Panther	DIHYDROLIPOAMIDE ACETYL/SUCCINYL-TRANSFERASE-RELATED	JGI		ISS
PTHR23151:SF25	Panther	BCCP2 (BIOTIN CARBOXYL CARRIER PROTEIN 2), BIOTIN	JGI		ISS
PF00364	PFAM	Biotin-requiring enzyme	JGI		ISS
UniRef100_C6TK92	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6TK92_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_G7KMP4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Biotin carboxyl carrier protein of acetyl-CoA carboxylase n=1 Tax=Medicago truncatula RepID=G7KMP4_MEDTR	SoyBase	E_val: 3.00E-111	ISS

Proteins Associated with Glyma19g03530

Locus	Gene Symbol	Protein Name
	BCCP2	Biotin carboxyl carrier protein 2

Expression Patterns of Glyma19g03530

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g03530

Paralog	Evidence	Comments
Glyma13g06080	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g03530 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g028800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g03530

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma19g03530

Limit To All Plant Sequences

>Glyma19g03530.1   sequence type=CDS   gene model=Glyma19g03530   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCTCCTTCTCGGTCCCATGCCCCAAGTGTCCTACAACTTCTTCTTCGTCTTCTCTCCCTTTGGGGTTGAATTCTCAAAAGGTCTCATTTCAAAGTGGGTTGATCTTGAAGCCTTCTCTTTCATTCGGATCTTTGTCTGCTGAATCTGCTGCATCAAGGATTCAGTGCCTTAACAGGAAGCAATTTTCTGTTCTGAAGGCTACTAAAGTTGAAAATTCCAACTCTGCCCCTGTAACGGTCAATGGACCTACTGTTGCTTCATCAAAAGAAAACCAAGTGCATAATGGAAAACTCTCTGATACTACTATCCCAGATGAAGCTTCAATTATTGCATTCATGTCTCAAGTTTCAGACCTTGTAAAACTTGTGGATTCGAGAGATATTGTGGAACTTCAACTTAAGCAATCAGACTGTGAGCTCATGATAAGAAAAAAAGAAGCATTGCAGCCTCCACCAATTATAGCCCCAGCACCACCACCAATGCACTATGCCACTTTTCCTTCTCCGTCTTCGCCGCTACCAGCAGAAGCTGCTCCTGCTAGCTCTGCACCTCCAAAAGCAGCTCCTGCCTTGCCTTCCCCCGGAAAAGCAAGCACATCTTCTCACCCACCACTGAAATGTCCAATGGCAGGAACCTTCTATAGGAGTCCAGCACCTGGTGAACCTGCATTTGTCAAGGTGGGAGATAAAGTGAAGAAAGGCCAGGTTATTTGCATTATCGAGGCTATGAAACTGATGAATGAAATTGAGGCTGATCAGTCAGGAACAATAGCTGAGGTATTAGCTGAGGATGGGAAACCAGTCAGTGTAGACATGCCTCTTTTTGTAATAGTTCCATGA

Predicted protein sequences of Glyma19g03530

Limit To All Plant Sequences

>Glyma19g03530.1   sequence type=predicted peptide   gene model=Glyma19g03530   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASFSVPCPKCPTTSSSSSLPLGLNSQKVSFQSGLILKPSLSFGSLSAESAASRIQCLNRKQFSVLKATKVENSNSAPVTVNGPTVASSKENQVHNGKLSDTTIPDEASIIAFMSQVSDLVKLVDSRDIVELQLKQSDCELMIRKKEALQPPPIIAPAPPPMHYATFPSPSSPLPAEAAPASSAPPKAAPALPSPGKASTSSHPPLKCPMAGTFYRSPAPGEPAFVKVGDKVKKGQVICIIEAMKLMNEIEADQSGTIAEVLAEDGKPVSVDMPLFVIVP*

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