SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G01050 | AT | Annotation by Michelle Graham. TAIR10: membrane-anchored ubiquitin-fold protein 1 precursor | chr3:13854-14675 FORWARD LENGTH=117 | SoyBase | E_val: 2.00E-44 | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| UniRef100_C6TMK1 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Putative uncharacterized protein n=1 Tax=Glycine max RepID=C6TMK1_SOYBN | SoyBase | E_val: 4.00E-79 | ISS |
| UniRef100_G7KLT7 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Membrane-anchored ubiquitin-fold protein n=1 Tax=Medicago truncatula RepID=G7KLT7_MEDTR | SoyBase | E_val: 4.00E-65 | ISS |
|
Glyma19g03476 not represented in the dataset |
Glyma19g03476 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.19g028200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma19g03476.2 sequence type=transcript gene model=Glyma19g03476 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATCCTGTGGGATGAATTTGATTATTTAGTGGAATGTTTTTCTTTTACCTTGTACCGACATAACGAATTCATGCTAGTATGATTTGACGTAACATTGTTGGCATTGACCTGGTTACAGAAGACACGGTAGGAAAGCATGAATACTACTCAAGTGAGATACTTTGATTTAACTCCCTTTGTTCATGGATGAAAAACTCAATTGAAGTAATTCACTGGACTACTTTGTCCTCTTGGTCTGAGGTTGAAGCTATTTGATTTCTGAATTTCGCTAGTTTCTTAATCTGAGTATGGCTGGGAACCAAGATCAGTTAGAGATCAAGTTTCTGTTGAGTGATGGTACAGATATTGGCCCCAAAAGTTATGCTGCTGCCACTAGTATTGCAACACTGAAAGAAAGTGTTCTTGCTCAATGGCCAAAAGATAAGGAGTATGGACCAAGAACTGTAAAAGATTTGAAGTTAATTAGTGCCGGAAAAATATTGGAGAACAACAGAACAGTGGGAGAATGTCAGAGTCCCCTGTGTGATCTACCTGGTGGAGTTATAACAATGCATGTGGTTGTGCAACCACCTTCTGTGGAGAAAGATAAGAAAGTAGCAAGTGAAGCGAAGCAGAGCAAATGTGTTTGTGTGATATTATAGTGTCCAAATTGAATAGAAGTTGTCATGTATTTAGGTGGTTAAAAGTTACACTTGTATTCATTTTAAAAGTAATCTATGGCTTTCAAAAGATTTCCTCATACACAAATTCTTTGGGTGCATGCCTCATTGTCTGATTGATGTAAATGCTGATTGAAATGAACTCTAAAATTATTCTCGTGCTTCAGCTTGATGCAAAGTGCACCTATAGCTAAACCTGTTGAAAATGTGCCTTAATTTACGTAATGTTTGTTTATGTGGTACC
>Glyma19g03476.1 sequence type=CDS gene model=Glyma19g03476 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTGGGAACCAAGATCAGTTAGAGATCAAGTTTCTGTTGAGTGATGGTACAGATATTGGCCCCAAAAGTTATGCTGCTGCCACTAGTATTGCAACACTGAAAGAAAGTGTTCTTGCTCAATGGCCAAAAGATAAGGAGTATGGACCAAGAACTGTAAAAGATTTGAAGTTAATTAGTGCCGGAAAAATATTGGAGAACAACAGAACAGTGGGAGAATGTCAGAGTCCCCTGTGTGATCTACCTGGTGGAGTTATAACAATGCATGTGGTTGTGCAACCACCTTCTGTGGAGAAAGATAAGAAAGTAGCAAGTGAAGCGAAGCAGAGCAAATGTGTTTGTGTGATATTATAG >Glyma19g03476.2 sequence type=CDS gene model=Glyma19g03476 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTGGGAACCAAGATCAGTTAGAGATCAAGTTTCTGTTGAGTGATGGTACAGATATTGGCCCCAAAAGTTATGCTGCTGCCACTAGTATTGCAACACTGAAAGAAAGTGTTCTTGCTCAATGGCCAAAAGATAAGGAGTATGGACCAAGAACTGTAAAAGATTTGAAGTTAATTAGTGCCGGAAAAATATTGGAGAACAACAGAACAGTGGGAGAATGTCAGAGTCCCCTGTGTGATCTACCTGGTGGAGTTATAACAATGCATGTGGTTGTGCAACCACCTTCTGTGGAGAAAGATAAGAAAGTAGCAAGTGAAGCGAAGCAGAGCAAATGTGTTTGTGTGATATTATAG
>Glyma19g03476.1 sequence type=predicted peptide gene model=Glyma19g03476 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAGNQDQLEIKFLLSDGTDIGPKSYAAATSIATLKESVLAQWPKDKEYGPRTVKDLKLISAGKILENNRTVGECQSPLCDLPGGVITMHVVVQPPSVEKDKKVASEAKQSKCVCVIL* >Glyma19g03476.2 sequence type=predicted peptide gene model=Glyma19g03476 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAGNQDQLEIKFLLSDGTDIGPKSYAAATSIATLKESVLAQWPKDKEYGPRTVKDLKLISAGKILENNRTVGECQSPLCDLPGGVITMHVVVQPPSVEKDKKVASEAKQSKCVCVIL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
