SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G29280 | AT | Annotation by Michelle Graham. TAIR10: unknown protein; Has 24 Blast hits to 24 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:11236705-11237947 REVERSE LENGTH=178 | SoyBase | E_val: 4.00E-82 | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| UniRef100_G7KLT6 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: HAT family dimerization domain containing protein n=1 Tax=Medicago truncatula RepID=G7KLT6_MEDTR | SoyBase | E_val: 4.00E-65 | ISS |
| UniRef100_I1N6A0 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N6A0_SOYBN | SoyBase | E_val: 5.00E-119 | ISS |
|
Glyma19g03430 not represented in the dataset |
Glyma19g03430 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma13g05910 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.19g027800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma19g03430.2 sequence type=transcript gene model=Glyma19g03430 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TAGAAGTAAATGGCCCTTAGGTTCCCATATTATTTGGCTTATAATTAAATTCATAAAACAATTTAACTTGTGGGGGCAGTCAATGTCCTTTAGTGCATCAGTGCTTAGCCTGTTGATTTTTTATTTTTTTTTGTGAAAAGTCTGTTGATTTATCTGTATGTCGGTTATGTGCTCATGGTCCTATGTTAGGCAATGCTTTTTTATACAACTTTTTTTATACTCTATTATATCCAATTAGTAATTACTTATATATGTTTCTCTTTTCCATATTTTTTCATGATGAAAGAATTGGCATGTGAAAGGGAATGCAGTAGGGGTGAGGATTATCGCCTCATCAAACTCACAATAACAGATTTCAATGCAAAGAAAGAACAAGCCACTGTTGTGGAGTGCAAAGGCCATGATGCTGCTTGGTTCCACAGCATTGATCATGCTCATGGTTGGGACAAGGATATCACCGGTATGATTGAACCAAAGGATGGGAAGAAAAGAATCTCAGTTTCATTTGAGTGTGAGACACTTAAAGCTGAGAAAGCAGCTGAAGACCATATCAGGAAGTTCATGCCAAAATTAGCCGGACTGGATGCTGTTGGTAAGTGAATGTCATGCAATTTACTTCCCACTTTCTACCTCCATGGGTAACTCCGCTTTGCTTTCATTTTGATGGAAAAGTTTCGTTAGTGCTATGCTGGACTTCCATTATATCTGCA
>Glyma19g03430.1 sequence type=CDS gene model=Glyma19g03430 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAGGAGAAAGTAGAGGGGAAGGTGGAAGAGATGATGATGATGATGGAAGGAGTAGCATCAATAGCATTGTTGCCATGTGGCTCTATCTCAGGACACTTCATTCAACTTCCACATTATATTTGCTATGGCCTTTGTGGCACTGAATTGGCATGTGAAAGGGAATGCAGTAGGGGTGAGGATTATCGCCTCATCAAACTCACAATAACAGATTTCAATGCAAAGAAAGAACAAGCCACTGTTGTGGAGTGCAAAGGCCATGATGCTGCTTGGTTCCACAGCATTGATCATGCTCATGGTTGGGACAAGGATATCACCGGTATGATTGAACCAAAGGATGGGAAGAAAAGAATCTCAGTTTCATTTGAGTGTGAGACACTTAAAGCTGAGAAAGCAGCTGAAGACCATATCAGGAAGTTCATGCCAAAATTAGCCGGACTGGATGCTGTTGTTAACATAGGAAAGATGACAATTTCTGGGTTGGATTTCGGAGAAGAGGACTGA >Glyma19g03430.2 sequence type=CDS gene model=Glyma19g03430 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCTTTTTTATACAACTTTTTTTATACTCTATTATATCCAATTAGTAATTACTTATATATGTTTCTCTTTTCCATATTTTTTCATGATGAAAGAATTGGCATGTGAAAGGGAATGCAGTAGGGGTGAGGATTATCGCCTCATCAAACTCACAATAACAGATTTCAATGCAAAGAAAGAACAAGCCACTGTTGTGGAGTGCAAAGGCCATGATGCTGCTTGGTTCCACAGCATTGATCATGCTCATGGTTGGGACAAGGATATCACCGGTATGATTGAACCAAAGGATGGGAAGAAAAGAATCTCAGTTTCATTTGAGTGTGAGACACTTAAAGCTGAGAAAGCAGCTGAAGACCATATCAGGAAGTTCATGCCAAAATTAGCCGGACTGGATGCTGTTGGTAAGTGA
>Glyma19g03430.1 sequence type=predicted peptide gene model=Glyma19g03430 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEEKVEGKVEEMMMMMEGVASIALLPCGSISGHFIQLPHYICYGLCGTELACERECSRGEDYRLIKLTITDFNAKKEQATVVECKGHDAAWFHSIDHAHGWDKDITGMIEPKDGKKRISVSFECETLKAEKAAEDHIRKFMPKLAGLDAVVNIGKMTISGLDFGEED* >Glyma19g03430.2 sequence type=predicted peptide gene model=Glyma19g03430 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MLFYTTFFILYYIQLVITYICFSFPYFFMMKELACERECSRGEDYRLIKLTITDFNAKKEQATVVECKGHDAAWFHSIDHAHGWDKDITGMIEPKDGKKRISVSFECETLKAEKAAEDHIRKFMPKLAGLDAVGK*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
