Glyma19g03420 - SoyBase

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Report for Sequence Feature Glyma19g03420

Feature Type:	gene_model
Chromosome:	Gm19
Start:	3440633
stop:	3445052
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g03420

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G39360	AT	Annotation by Michelle Graham. TAIR10: EID1-like 2 \| chr5:15753313-15754062 REVERSE LENGTH=249	SoyBase	E_val: 2.00E-146	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
UniRef100_I1N699	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N699_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q9FLZ8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: EID1-like F-box protein 2 n=1 Tax=Arabidopsis thaliana RepID=EDL2_ARATH	SoyBase	E_val: 7.00E-144	ISS

Expression Patterns of Glyma19g03420

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g03420

Paralog	Evidence	Comments
Glyma13g05901	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g03420 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g027700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g03420

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma19g03420

Limit To All Plant Sequences

>Glyma19g03420.3   sequence type=transcript   gene model=Glyma19g03420   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACCAGCTCAGTGCATCACACGAAATCCTTCAGCCTAGTTTCTGTTTCTTCCATTGTTCTTTGGTCTTCTTTCTCCAACCTTGTCTCTCTGCATTTTTGTTGCTTTGAGTGTGTATTGTTGTGCTGTGCTTTTTGTGGACCGAATTGCCCCTACTCAGAGGTAAATAGAATGATTCTCACAAAGCAATACCGATGTGTACATTCAGCTAGTTGTCAATGCACTAAGGGGCATCAAGTTCTATGGAAAGAGTTTTGCAAAACGAGAGCTCCAAAGATGATGCTTGATCTGCAATCTAGTGGAAGCCACAGTGTTGATGGGAACTGGAGGGCTCTAGGGAAGCTTCTTATATTCTGTTCAGGTTGCAGGCAGGGTGGTTTGTTCAATAACGTTCAGGTTCCTGGTCATTTTGTTAATAAGACTCGATTTTCTAGAACATCAGGAAAGAGCTTTCTCATGCCACAATGCATAAATGATGTTTTGTATGTGTCTGATCCTTGTGAACATATTGGACAAAGTGAAGAGGGTGATTTAGGATTCTTCAGAGGAATTTTCAAGTCGTTTGCATCGTCAAATGTCAAGAGGATGCTTATTAACAGAGGTGCACAGCTCCATCAAACCGAGATTTGCCCGTATTGTAAGGCAAAGCTGTGGAGCATGCTGCAGGCTAATATGATTCCACAAACTGCTAGTTGCAGGTTGGGTTCCTATGAAGATTATATTGAGTATTACGTGTGCCTTAATGGTCACTTGCTTGGGGTCTGCACATTGTTACCATTGTCTGATTCAGAAGATGTGTCTGAGGAGTAAGATATTAATGACTCAGGTTGGCATTGAATTCTCCAATGAGATTTGGTTGAACACACTGATGGTCTACTCAAGAAGGGTAAAATTCTGCTCAGCAACTGCTGAAATGTTCCATTATGATTCAAAACCTCTATATTCCATTATGCTTCTTCATGTTGCTGTCTCAACCCAAGCCGGCATTTTTCACTGATTATTATAAATATTGGCAACAATTTGTTTTTAATGAATCAACTAGAAGGTAGTTACTGATAACTATGTGGTATACCCGTGTATATTGATGTGTGGATATTTGACCTGGGTGACAGATTTGGTTGTGCAATGATTCATACTTGTTAAGAATTATTTTGATTTAGTAGCATTTTCCAATTCAAATTCATTTTGTGCTATGATTCACACTATGTATGTGTTCCACCCTCTTAAATCCACCACTGAGTAAGTAGGTACTAA

Coding sequences of Glyma19g03420

Limit To All Plant Sequences

>Glyma19g03420.2   sequence type=CDS   gene model=Glyma19g03420   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACCAGCTCAGTGCATCACACGAAATCCTTCAGCCTAGTTTCTGTTTCTTCCATTGTTCTTTGGTCTTCTTTCTCCAACCTTGTCTCTCTGCATTTTTGTTGCTTTGAGTGTGTATTGTTGTGCTGTGCTTTTTGTGGACCGAATTGCCCCTACTCAGAGGTAAATAGAATGATTCTCACAAAGCAATACCGATGTGTACATTCAGCTAGTTGTCAATGCACTAAGGGGCATGTAAGTGAAGATGTGATATTCTTGGTGTTTCAGCATTTGAATTGGAACCCCAAGCTAATTGCTGCTCTGTCATGTGTGTGCAAATGGTTTGATGATCTTTCGAAGCAAGTTCTATGGAAAGAGTTTTGCAAAACGAGAGCTCCAAAGATGATGCTTGATCTGCAATCTAGTGGAAGCCACAGTGTTGATGGGAACTGGAGGGCTCTAGGGAAGCTTCTTATATTCTGTTCAGGTTGCAGGCAGGGTGGTTTGTTCAATAACGTTCAGGTTCCTGGTCATTTTGTTAATAAGACTCGATTTTCTAGAACATCAGGAAAGAGCTTTCTCATGCCACAATGCATAAATGATGTTTTGTATGTGTCTGATCCTTGTGAACATATTGGACAAAGTGAAGAGGGTGATTTAGGATTCTTCAGAGGAATTTTCAAGTCGTTTGCATCGTCAAATGTCAAGAGGATGCTTATTAACAGAGGTGCACAGCTCCATCAAACCGAGATTTGCCCGTATTGTAAGGCAAAGCTGTGGAGCATGCTGCAGGCTAATATGATTCCACAAACTGCTAGTTGCAGGTTGGGTTCCTATGAAGATTATATTGAGTATTACGTGTGCCTTAATGGTCACTTGCTTGGGGTCTGCACATTGTTACCATTGTCTGATTCAGAAGATGTGTCTGAGGAGTAA

>Glyma19g03420.3   sequence type=CDS   gene model=Glyma19g03420   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACCAGCTCAGTGCATCACACGAAATCCTTCAGCCTAGTTTCTGTTTCTTCCATTGTTCTTTGGTCTTCTTTCTCCAACCTTGTCTCTCTGCATTTTTGTTGCTTTGAGTGTGTATTGTTGTGCTGTGCTTTTTGTGGACCGAATTGCCCCTACTCAGAGGTAAATAGAATGATTCTCACAAAGCAATACCGATGTGTACATTCAGCTAGTTGTCAATGCACTAAGGGGCATCAAGTTCTATGGAAAGAGTTTTGCAAAACGAGAGCTCCAAAGATGATGCTTGATCTGCAATCTAGTGGAAGCCACAGTGTTGATGGGAACTGGAGGGCTCTAGGGAAGCTTCTTATATTCTGTTCAGGTTGCAGGCAGGGTGGTTTGTTCAATAACGTTCAGGTTCCTGGTCATTTTGTTAATAAGACTCGATTTTCTAGAACATCAGGAAAGAGCTTTCTCATGCCACAATGCATAAATGATGTTTTGTATGTGTCTGATCCTTGTGAACATATTGGACAAAGTGAAGAGGGTGATTTAGGATTCTTCAGAGGAATTTTCAAGTCGTTTGCATCGTCAAATGTCAAGAGGATGCTTATTAACAGAGGTGCACAGCTCCATCAAACCGAGATTTGCCCGTATTGTAAGGCAAAGCTGTGGAGCATGCTGCAGGCTAATATGATTCCACAAACTGCTAGTTGCAGGTTGGGTTCCTATGAAGATTATATTGAGTATTACGTGTGCCTTAATGGTCACTTGCTTGGGGTCTGCACATTGTTACCATTGTCTGATTCAGAAGATGTGTCTGAGGAGTAA

Predicted protein sequences of Glyma19g03420

Limit To All Plant Sequences

>Glyma19g03420.2   sequence type=predicted peptide   gene model=Glyma19g03420   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTSSVHHTKSFSLVSVSSIVLWSSFSNLVSLHFCCFECVLLCCAFCGPNCPYSEVNRMILTKQYRCVHSASCQCTKGHVSEDVIFLVFQHLNWNPKLIAALSCVCKWFDDLSKQVLWKEFCKTRAPKMMLDLQSSGSHSVDGNWRALGKLLIFCSGCRQGGLFNNVQVPGHFVNKTRFSRTSGKSFLMPQCINDVLYVSDPCEHIGQSEEGDLGFFRGIFKSFASSNVKRMLINRGAQLHQTEICPYCKAKLWSMLQANMIPQTASCRLGSYEDYIEYYVCLNGHLLGVCTLLPLSDSEDVSEE*

>Glyma19g03420.3   sequence type=predicted peptide   gene model=Glyma19g03420   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTSSVHHTKSFSLVSVSSIVLWSSFSNLVSLHFCCFECVLLCCAFCGPNCPYSEVNRMILTKQYRCVHSASCQCTKGHQVLWKEFCKTRAPKMMLDLQSSGSHSVDGNWRALGKLLIFCSGCRQGGLFNNVQVPGHFVNKTRFSRTSGKSFLMPQCINDVLYVSDPCEHIGQSEEGDLGFFRGIFKSFASSNVKRMLINRGAQLHQTEICPYCKAKLWSMLQANMIPQTASCRLGSYEDYIEYYVCLNGHLLGVCTLLPLSDSEDVSEE*

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