Glyma19g03401 - SoyBase

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Report for Sequence Feature Glyma19g03401

Feature Type:	gene_model
Chromosome:	Gm19
Start:	3410742
stop:	3414319
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g03401

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G15430	AT	Annotation by Michelle Graham. TAIR10: Plant calmodulin-binding protein-related \| chr5:5010180-5011616 FORWARD LENGTH=478	SoyBase	E_val: 1.00E-23	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005516	GO-mf	Annotation by Michelle Graham. GO Molecular Function: calmodulin binding	SoyBase	N/A	ISS
PF07839	PFAM	Plant calmodulin-binding domain	JGI		ISS
UniRef100_Q10Q34	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Expressed protein n=2 Tax=Oryza sativa Japonica Group RepID=Q10Q34_ORYSJ	SoyBase	E_val: 5.00E-28	ISS
UniRef100_UPI000233E04F	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233E04F related cluster n=1 Tax=unknown RepID=UPI000233E04F	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma19g03401

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma19g03401 not represented in the dataset	Glyma19g03401 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g03401

Paralog	Evidence	Comments
Glyma13g05890	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g03401 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g027500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g03401

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma19g03401

Limit To All Plant Sequences

>Glyma19g03401.2   sequence type=transcript   gene model=Glyma19g03401   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATTTTGATTACTCCTATGATTCTCAGCTCCCAGCTAGAATTTGTTGCATTTCTTATTCCTCATTGATTTCCTTAGATGCGTGTCTTCTTTTTATACAGGGATTGTTGCCCTGAATCTTATTCTGCTCATCTGCATATCTCATCTCCCATATGATGGCCAATGAAAGTGGTGAATTACCAGTGACCCCAGAAGTTACTGAGTCACCTGGGGTTGAAATAAGAAGGCATTCAGATGGCAAAGCTAGTTCTGGAACTAGTGTTGAAAAATTTGTTCCCAATTATCTCAGAGCTTCCACTGGTTCATGTCATGATTTTTGTAAATACGGGAAGAAACATGCATTTGATTCGAAGGAAAGACGTTCTATACCTAATAGAGCTACAAGAAAACTGCTTCACCACAGTTCAGAAGGTAGTGTTGGTGGGACAATGATGCCAGTTGCTAGGCTCAGTGCATCTGTGGATTCTACCAAGTCCACAAAGATTTCAACGGTCAAACTCAAACTATCAGTTGATTCCAAGACATGGATTTCTGATATCTCTGACACTTATAAGCAGGAACGGCCAACAAAATCATTTGACGGCCAAAAAGTAACACGGAATGAAGTTCTGGTGAACAGGAACAAATCATCATTGGCCAAGGTCAAGCTATCGATCCTTCCGAATTTGCAAACATCTCCATCAGTGAGGCAAGAAATTTCATCAATTAAGGAGGTCCGATCCCTGTCAAATTCAACTTCCAAAAAGGTGGAAACTCCATCAAAATCAACCGCCAATAAGACGGAAACTCCTTCAAAACCAACTTTCAATAAGGTGGGAAATCCATTAAAATCTACATCCAAGGTCAAAACTTCATCTAAACCAACTTCCAATATGGTGAAAATGTCATCACAATTATCTTCTCTCAAAGGTAAAGAAACGAAGTTGTCTGAAAAACAAGTGACTTATTTAAATTCAAGCAGTGTCAGAAGGAAGCAAATATCTTCTATGAATTCCTCAGAAGGCGTTGGTGGCCAAAGATATAGTAAGATCAAGACAGGAAAGGAGGCAACCTCCTCCAATTCCAAAGCAGCTTCAAAAAAATTGATGTCACCTTCAAAGGCTTTATTGTCCCCCAGACCTTCCCTTATTAGAGTTGCAAGTATAAATTCAAGAAAGCATAAGAGTCTGAAAATTGCTTCTCATCTTAAGAATCAGTGTACTGCCCGAAAGGATGAAAATGAGGAACACAATAACAACGTGTTAGAGGAAAAGACTTTGCACGTCATCAAGATGGAAAGTGAAAACAAAACTTTGCAATCTGATCAAAATGCAAGCTATGATGATGAATCATACCTCCCTCAGTTGTCATCACCAAAGTCTTCAGTATCCTCAATTTCTAAATCCTTATCCCAAGAAGACCAAGAGGAATCTGAATATACAACTAGTGAATTTGAGCAGGATTCTTTTTCAGGAAACCATGAAATTGAATGCATGGAAAATGAGGAGACTTTGGGAGTTGAGAAGAAAGGCAAGCCCAAAAAGGATGGGGTTGTATATTCCAGAGGCAAGGGCAACCAAATGATAAAATTAAAGTTCAGGAGGGGAAAAGTGGTTGAAAATCAAACTGAGATAAGTAGTCCACGAAGGCTTAAATTTCGGAGAGCAAGAGTGCTGGGGGAGAAAGCCAATGGTAAGGTCAATGTCCGGAAAAGCTTTGAAGGAAATGAAGCCTGTGATGACAGCAATGGTGCCACAACTGGTCCTGAGAAGGTTGTTTTGAGGCATCAAGACATGCAGGACAAAAAAGATGCACAGGGATTATTAAATAATGTAATTGAAGAAACAGCAAGTAAACTGGTCGAAGCTCGCAAGAGCAAGGTTAAAGCATTGGTTGGTGCCTTTGAAACCGTGATCTCTCTGCATGAGAAAAAACCTTCTGCAAACACAGTCAGTTGATGGAATCTGGATAGACATTTTTCTGGCTTTTTTCATTTGTTTTGTAAAGAAATGGTAGGAAAATAATCCTGAGCTTTGGTAGTAGTTGTGAAGCCAACAAGCTGAAGGTACTGAAGAAAGTAGAGGTAGATTTGCCTTGAGTTTGTCTTTAAAAGTTCTGCTGCATCATGCATGCATGTAGCAGTTGAAAGGGGGATTTTGTGTTGAGAACTTACCTTAACTTGCACCATATACTTTTTGTTTCATTTTGCTTTGGAAATCCATACCTATTGTGAATGATTTGTGTCTTCTGATTTTGAATAAAATATCAAACAGTGATGCCAGTGACTTTGTACTTTTAGCCTAGAAAGGAAAAAAAGTGCTTT

Coding sequences of Glyma19g03401

Limit To All Plant Sequences

>Glyma19g03401.1   sequence type=CDS   gene model=Glyma19g03401   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATGGCCAATGAAAGTGGTGAATTACCAGTGACCCCAGAAGTTACTGAGTCACCTGGGGTTGAAATAAGAAGGCATTCAGATGGCAAAGCTAGTTCTGGAACTAGTGTTGAAAAATTTGTTCCCAATTATCTCAGAGCTTCCACTGGTTCATGTCATGATTTTTGTAAATACGGGAAGAAACATGCATTTGATTCGAAGGAAAGACGTTCTATACCTAATAGAGCTACAAGAAAACTGCTTCACCACAGTTCAGAAGGTAGTGTTGGTGGGACAATGATGCCAGTTGCTAGGCTCAGTGCATCTGTGGATTCTACCAAGTCCACAAAGATTTCAACGGTCAAACTCAAACTATCAGTTGATTCCAAGACATGGATTTCTGATATCTCTGACACTTATAAGCAGGAACGGCCAACAAAATCATTTGACGGCCAAAAAGTAACACGGAATGAAGTTCTGGTGAACAGGAACAAATCATCATTGGCCAAGGTCAAGCTATCGATCCTTCCGAATTTGCAAACATCTCCATCAGTGAGGCAAGAAATTTCATCAATTAAGGAGGTCCGATCCCTGTCAAATTCAACTTCCAAAAAGGTGGAAACTCCATCAAAATCAACCGCCAATAAGACGGAAACTCCTTCAAAACCAACTTTCAATAAGGTGGGAAATCCATTAAAATCTACATCCAAGGTCAAAACTTCATCTAAACCAACTTCCAATATGGTGAAAATGTCATCACAATTATCTTCTCTCAAAGGTAAAGAAACGAAGTTGTCTGAAAAACAAGTGACTTATTTAAATTCAAGCAGTGTCAGAAGGAAGCAAATATCTTCTATGAATTCCTCAGAAGGCGTTGGTGGCCAAAGATATAGTAAGATCAAGACAGGAAAGGAGGCAACCTCCTCCAATTCCAAAGCAGCTTCAAAAAAATTGATGTCACCTTCAAAGGCTTTATTGTCCCCCAGACCTTCCCTTATTAGAGTTGCAAGTATAAATTCAAGAAAGCATAAGAGTCTGAAAATTGCTTCTCATCTTAAGAATCAGTGTACTGCCCGAAAGGATGAAAATGAGGAACACAATAACAACGTGTTAGAGGAAAAGACTTTGCACGTCATCAAGATGGAAAGTGAAAACAAAACTTTGCAATCTGATCAAAATGCAAGCTATGATGATGAATCATACCTCCCTCAGTTGTCATCACCAAAGTCTTCAGTATCCTCAATTTCTAAATCCTTATCCCAAGAAGACCAAGAGGAATCTGAATATACAACTAGTGAATTTGAGCAGGATTCTTTTTCAGGAAACCATGAAATTGAATGCATGGAAAATGAGGAGACTTTGGGAGTTGAGAAGAAAGGCAAGCCCAAAAAGGATGGGGTTGTATATTCCAGAGGCAAGGGCAACCAAATGATAAAATTAAAGTTCAGGAGGGGAAAAGTGGTTGAAAATCAAACTGAGATAAGTAGTCCACGAAGGCTTAAATTTCGGAGAGCAAGAGTGCTGGGGGAGAAAGCCAATGGTAAGGTCAATGTCCGGAAAAGCTTTGAAGGAAATGAAGCCTGTGATGACAGCAATGGTGCCACAACTGGTCCTGAGAAGGTTGTTTTGAGGCATCAAGACATGCAGGACAAAAAAGATGCACAGGGATTATTAAATAATGTAATTGAAGAAACAGCAAGTAAACTGGTCGAAGCTCGCAAGAGCAAGGTTAAAGCATTGGTTGGTGCCTTTGAAACCGTGATCTCTCTGCATGAGAAAAAACCTTCTGCAAACACAGTCAGTTGA

>Glyma19g03401.2   sequence type=CDS   gene model=Glyma19g03401   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATGGCCAATGAAAGTGGTGAATTACCAGTGACCCCAGAAGTTACTGAGTCACCTGGGGTTGAAATAAGAAGGCATTCAGATGGCAAAGCTAGTTCTGGAACTAGTGTTGAAAAATTTGTTCCCAATTATCTCAGAGCTTCCACTGGTTCATGTCATGATTTTTGTAAATACGGGAAGAAACATGCATTTGATTCGAAGGAAAGACGTTCTATACCTAATAGAGCTACAAGAAAACTGCTTCACCACAGTTCAGAAGGTAGTGTTGGTGGGACAATGATGCCAGTTGCTAGGCTCAGTGCATCTGTGGATTCTACCAAGTCCACAAAGATTTCAACGGTCAAACTCAAACTATCAGTTGATTCCAAGACATGGATTTCTGATATCTCTGACACTTATAAGCAGGAACGGCCAACAAAATCATTTGACGGCCAAAAAGTAACACGGAATGAAGTTCTGGTGAACAGGAACAAATCATCATTGGCCAAGGTCAAGCTATCGATCCTTCCGAATTTGCAAACATCTCCATCAGTGAGGCAAGAAATTTCATCAATTAAGGAGGTCCGATCCCTGTCAAATTCAACTTCCAAAAAGGTGGAAACTCCATCAAAATCAACCGCCAATAAGACGGAAACTCCTTCAAAACCAACTTTCAATAAGGTGGGAAATCCATTAAAATCTACATCCAAGGTCAAAACTTCATCTAAACCAACTTCCAATATGGTGAAAATGTCATCACAATTATCTTCTCTCAAAGGTAAAGAAACGAAGTTGTCTGAAAAACAAGTGACTTATTTAAATTCAAGCAGTGTCAGAAGGAAGCAAATATCTTCTATGAATTCCTCAGAAGGCGTTGGTGGCCAAAGATATAGTAAGATCAAGACAGGAAAGGAGGCAACCTCCTCCAATTCCAAAGCAGCTTCAAAAAAATTGATGTCACCTTCAAAGGCTTTATTGTCCCCCAGACCTTCCCTTATTAGAGTTGCAAGTATAAATTCAAGAAAGCATAAGAGTCTGAAAATTGCTTCTCATCTTAAGAATCAGTGTACTGCCCGAAAGGATGAAAATGAGGAACACAATAACAACGTGTTAGAGGAAAAGACTTTGCACGTCATCAAGATGGAAAGTGAAAACAAAACTTTGCAATCTGATCAAAATGCAAGCTATGATGATGAATCATACCTCCCTCAGTTGTCATCACCAAAGTCTTCAGTATCCTCAATTTCTAAATCCTTATCCCAAGAAGACCAAGAGGAATCTGAATATACAACTAGTGAATTTGAGCAGGATTCTTTTTCAGGAAACCATGAAATTGAATGCATGGAAAATGAGGAGACTTTGGGAGTTGAGAAGAAAGGCAAGCCCAAAAAGGATGGGGTTGTATATTCCAGAGGCAAGGGCAACCAAATGATAAAATTAAAGTTCAGGAGGGGAAAAGTGGTTGAAAATCAAACTGAGATAAGTAGTCCACGAAGGCTTAAATTTCGGAGAGCAAGAGTGCTGGGGGAGAAAGCCAATGGTAAGGTCAATGTCCGGAAAAGCTTTGAAGGAAATGAAGCCTGTGATGACAGCAATGGTGCCACAACTGGTCCTGAGAAGGTTGTTTTGAGGCATCAAGACATGCAGGACAAAAAAGATGCACAGGGATTATTAAATAATGTAATTGAAGAAACAGCAAGTAAACTGGTCGAAGCTCGCAAGAGCAAGGTTAAAGCATTGGTTGGTGCCTTTGAAACCGTGATCTCTCTGCATGAGAAAAAACCTTCTGCAAACACAGTCAGTTGA

Predicted protein sequences of Glyma19g03401

Limit To All Plant Sequences

>Glyma19g03401.1   sequence type=predicted peptide   gene model=Glyma19g03401   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MMANESGELPVTPEVTESPGVEIRRHSDGKASSGTSVEKFVPNYLRASTGSCHDFCKYGKKHAFDSKERRSIPNRATRKLLHHSSEGSVGGTMMPVARLSASVDSTKSTKISTVKLKLSVDSKTWISDISDTYKQERPTKSFDGQKVTRNEVLVNRNKSSLAKVKLSILPNLQTSPSVRQEISSIKEVRSLSNSTSKKVETPSKSTANKTETPSKPTFNKVGNPLKSTSKVKTSSKPTSNMVKMSSQLSSLKGKETKLSEKQVTYLNSSSVRRKQISSMNSSEGVGGQRYSKIKTGKEATSSNSKAASKKLMSPSKALLSPRPSLIRVASINSRKHKSLKIASHLKNQCTARKDENEEHNNNVLEEKTLHVIKMESENKTLQSDQNASYDDESYLPQLSSPKSSVSSISKSLSQEDQEESEYTTSEFEQDSFSGNHEIECMENEETLGVEKKGKPKKDGVVYSRGKGNQMIKLKFRRGKVVENQTEISSPRRLKFRRARVLGEKANGKVNVRKSFEGNEACDDSNGATTGPEKVVLRHQDMQDKKDAQGLLNNVIEETASKLVEARKSKVKALVGAFETVISLHEKKPSANTVS*

>Glyma19g03401.2   sequence type=predicted peptide   gene model=Glyma19g03401   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MMANESGELPVTPEVTESPGVEIRRHSDGKASSGTSVEKFVPNYLRASTGSCHDFCKYGKKHAFDSKERRSIPNRATRKLLHHSSEGSVGGTMMPVARLSASVDSTKSTKISTVKLKLSVDSKTWISDISDTYKQERPTKSFDGQKVTRNEVLVNRNKSSLAKVKLSILPNLQTSPSVRQEISSIKEVRSLSNSTSKKVETPSKSTANKTETPSKPTFNKVGNPLKSTSKVKTSSKPTSNMVKMSSQLSSLKGKETKLSEKQVTYLNSSSVRRKQISSMNSSEGVGGQRYSKIKTGKEATSSNSKAASKKLMSPSKALLSPRPSLIRVASINSRKHKSLKIASHLKNQCTARKDENEEHNNNVLEEKTLHVIKMESENKTLQSDQNASYDDESYLPQLSSPKSSVSSISKSLSQEDQEESEYTTSEFEQDSFSGNHEIECMENEETLGVEKKGKPKKDGVVYSRGKGNQMIKLKFRRGKVVENQTEISSPRRLKFRRARVLGEKANGKVNVRKSFEGNEACDDSNGATTGPEKVVLRHQDMQDKKDAQGLLNNVIEETASKLVEARKSKVKALVGAFETVISLHEKKPSANTVS*

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