SoyBase
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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G15400 | AT | Annotation by Michelle Graham. TAIR10: U-box domain-containing protein | chr5:4997764-5002907 REVERSE LENGTH=1038 | SoyBase | E_val: 0 | ISS |
| GO:0006511 | GO-bp | Annotation by Michelle Graham. GO Biological Process: ubiquitin-dependent protein catabolic process | SoyBase | N/A | ISS |
| GO:0010413 | GO-bp | Annotation by Michelle Graham. GO Biological Process: glucuronoxylan metabolic process | SoyBase | N/A | ISS |
| GO:0016567 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein ubiquitination | SoyBase | N/A | ISS |
| GO:0045492 | GO-bp | Annotation by Michelle Graham. GO Biological Process: xylan biosynthetic process | SoyBase | N/A | ISS |
| GO:0000151 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: ubiquitin ligase complex | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0004842 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ubiquitin-protein ligase activity | SoyBase | N/A | ISS |
| GO:0034450 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ubiquitin-ubiquitin ligase activity | SoyBase | N/A | ISS |
| KOG2042 | KOG | Ubiquitin fusion degradation protein-2 | JGI | ISS | |
| PTHR13931 | Panther | UBIQUITINATION FACTOR E4 | JGI | ISS | |
| PTHR13931:SF2 | Panther | UBIQUITINATION FACTOR E4B | JGI | ISS | |
| PF04564 | PFAM | U-box domain | JGI | ISS | |
| PF10408 | PFAM | Ubiquitin elongating factor core | JGI | ISS | |
| UniRef100_B9T3S8 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Ubiquitin-protein ligase, putative n=1 Tax=Ricinus communis RepID=B9T3S8_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_I1N691 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N691_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma19g03370 not represented in the dataset |
Glyma19g03370 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma13g05850 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.19g027200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma19g03370.1 sequence type=CDS gene model=Glyma19g03370 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCGGCGGCGAAACCCCAACGCACTCCGCAGGAAGTGGAGGACATCGTCATCCGCAAAATCTTTCTAGTCTCGATCACCGAAATCGCCACCACTACGGATTCGAGAATCGTGTATTTAGAACTGACCGCGGCCGAGATTCTCAGCGAGGACAAGGAGCTCCGCCTCTCGCGCGATTGCATGGAGAGGGTTTTAATCGACCGTCTCTCCGGCGAATTCGCCGGAGCCGTAGACGAGTCTCCGTTCCAGTACCTCGTTGGCTGTTACCACCGAGCGCACGAGGAAGGCAAGAAAATCGCGAACATGAAGGACAAAACCCTACGGTCGGAGATGGAGGCGGTGGTGAGGCAGGCCAAGAAGCTCTGCGTCAACTACTGCCGGATTCATTTAGCAAATCCCGAGCTCTTTCCGAGCCGGGGTTCGGCGAATTCGGGCGGTGCCAATTCGCCGTTGCTGTCGCTGATTTTGGCGGAGGTAGGCGGCGGGAACGTGTTCGGCGGTGGCGGCGGAGGGGCAAAGAGTCCGCCGGGGTTTCTGGAGGAGTTTTTCAGGGACCCGGATTTTGACAGCTTGGACAAGATTCTAAAGGGTTTGTATGAGGAGCTGAGAGGGAGTGTGATGAAGGTTTCTGCTCTTGGGAACTTTCAGGACTCATTGAGGGCTTTGTTGTATTTGGTTAGGTTTCCCGTTGGTGCTAAGTCTCTTGTGAATCATGAATGGTGGATTCCCAAAGGGGTTTATATGAATGGCCGTGCTATTGAGATGACCAGCATTTTGGGTCCCTTTTTTCATATCAGTGCTCTTCCTGATCATGCTTTTTTCAAGGGCCAGCCTGATGTTGGGCAGCAGTGTTTTTCTGATGCATCAACTAGGCGGCCTGCTGATTTGTTATCTTCATTTTCCACCATCAAAACTGTCATGAACAACTTATATGATGGCCTAGCTGAAGTACTCCTCATCCTCCTTAAAAGCCAAGATACTCGTGAAAGTGTACTTGAGTATCTTGCGGAGGCGATCAATATAAATGCATCCAGGGCTCATATACAGGTTGACCCTATTACTTGTGCAAGTTCAGGCATGTTTGTAAATCTCAGTGCTGTCATGCTTCGTTTATGTGAGCCATTTTTAGATGCAAATTTAACAAAAAGGGATAAAATTGATGCAAAATATGTGCACTGCTCAAACCGCTTGAAGCTAAGTGGGTTGACTGCTCTTCATGCATCATCAGAAGAAGTTACTGAATGGCTTAATAGTAAAAACCCAGCTACAACTGGGGCAACCAATCAATATAGTGATGATCAAAAACGCTTGCAACAATCCCAAGAGGCCAGCAGTTCTGGTAGTAATAATTTTGGTGAGCTGTCAAATGAAAATTCTGCACGTGCTGAAAAGACAAAATATTCATTTATTTGTGAATGCTTCTTTATGACCGCAAGAGTGCTCAACTTGGGCCTTTTAAAAGCATTTTCTGACTTCAAACACTTAGTTCAGGATATTTCTCGGTGTGAAGATGCTCTTGCCACACTTAAAGCCATGCAGGAGCGGACACCCACCCCTCAGGCAGAATTGGATATAAATCGGCTTGAGAAAGAAATGGAGTTGTACTCACAGGAAAAACTTTGTTATGAGGCTCAGATATTGAGGGATAACACTCTTATTCAAAATGCGCTTTCCTTGTACCGCTTGATGATTATTTGGTTGGTTGGCTTGGTGGGTGGATTTAAGATGCCTCTACCACCAACTTGCCCAATGGAATTTGCTACCATGCCTGAACATTTTGTGGAAGATGCCATGGAACTTTTAATATTTGCTTCCCGGATTCCAAAGGCCTTAGATGGAGTTGTGCTGGAAGAATTTATGAACTTTATAATTATGTTCATGGCCAGCCCTGAATTTATCAAAAACCCATATCTTAGAGCAAAGATGGTTGAAGTATTGAACTGCTGGATGCCCCGCAGGAGCGGCTCAACTGCTACAGCCACTCTATTTGAAGGCCACCAACTCTCTCTTGAGTATCTTGTGAGGAATCTTCTGAAACTCTACGTTGACATTGAGTTCACTGGTTCTCACACACAGTTCTATGACAAGTTTAACATCCGCCATAATATTGCTGAACTCCTTGAATACCTGTGGCAAGTCCCTAGTCATCGTAATGCTTGGAGACAGATTGCTAAAGAGGAGGAAAAGGGTGTCTATCTGAATTTCTTAAACTTTCTGATTAATGATAGTATTTATCTTCTTGATGAAAGTCTGAACAAAATTCTTGAGCTAAAAGAATTGGAGGCTGAGATGTCAAATACGGTCGAGTGGGAGCGACGACCAGTTCAAGAGAGGCAGGAGAGGACCCGGTTATTCCATTCTCAAGAAAATATTATTCGGATAGATATGAAGTTGGCAAACGAAGATGTCAGTATGCTTGCATTTACTTCAGAGCAGATTACTGCTCCATTCCTACTTCCCGAGATGGTTGAAAGAGTGGCTAGCATGCTCAATTACTTTCTGCTGCAATTGGTGGGTCCTCAAAGAAAATCGCTTAGTCTGAAGGATCCTGAGAAATATGAATTTCGTCCTAAGCATTTGCTAAAACAGATTGTGCACATATATGTTCATCTAGCTAGGGGTGACACGAATTCCATCTTCCCAGCTGCCATCTCAAAGGATGGCCGGTCATACAATGATCAGTTGTTTAGTGCTGGGGCAGATGTCCTTCACAGAATTGGGGAGGATGGGAGAATTATACAGGAATTTATTCAACTTGGTGCTAAAGCTAAAGTTGCTGCTTCAGAGGCAATGGATGCTGAAGCTACTCTAGGGGAGATACCAGATGAATTCCTGGATCCAATTCAATACACTTTGATGAAGGATCCAGTTATCTTGCCTTCTTCAAGGATCACGGTTGATCGTCCTGTCATTCAGAGGCATCTTCTTAGTGATAGTACTGACCCATTCAACCGTTCTCATCTTACTGCGGATATGTTGATTCCCGATGATGCGCTAAAAGCTAGAATTGAGGAGTTTGTCAGGTCTCAGGAAATGAAGAAACACTTGAGCCTACAGAGTACCAAGGCCACAATTCAGACTACAAATGGGGAAACAATGTTGGTTGATTAG
>Glyma19g03370.1 sequence type=predicted peptide gene model=Glyma19g03370 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAAAKPQRTPQEVEDIVIRKIFLVSITEIATTTDSRIVYLELTAAEILSEDKELRLSRDCMERVLIDRLSGEFAGAVDESPFQYLVGCYHRAHEEGKKIANMKDKTLRSEMEAVVRQAKKLCVNYCRIHLANPELFPSRGSANSGGANSPLLSLILAEVGGGNVFGGGGGGAKSPPGFLEEFFRDPDFDSLDKILKGLYEELRGSVMKVSALGNFQDSLRALLYLVRFPVGAKSLVNHEWWIPKGVYMNGRAIEMTSILGPFFHISALPDHAFFKGQPDVGQQCFSDASTRRPADLLSSFSTIKTVMNNLYDGLAEVLLILLKSQDTRESVLEYLAEAININASRAHIQVDPITCASSGMFVNLSAVMLRLCEPFLDANLTKRDKIDAKYVHCSNRLKLSGLTALHASSEEVTEWLNSKNPATTGATNQYSDDQKRLQQSQEASSSGSNNFGELSNENSARAEKTKYSFICECFFMTARVLNLGLLKAFSDFKHLVQDISRCEDALATLKAMQERTPTPQAELDINRLEKEMELYSQEKLCYEAQILRDNTLIQNALSLYRLMIIWLVGLVGGFKMPLPPTCPMEFATMPEHFVEDAMELLIFASRIPKALDGVVLEEFMNFIIMFMASPEFIKNPYLRAKMVEVLNCWMPRRSGSTATATLFEGHQLSLEYLVRNLLKLYVDIEFTGSHTQFYDKFNIRHNIAELLEYLWQVPSHRNAWRQIAKEEEKGVYLNFLNFLINDSIYLLDESLNKILELKELEAEMSNTVEWERRPVQERQERTRLFHSQENIIRIDMKLANEDVSMLAFTSEQITAPFLLPEMVERVASMLNYFLLQLVGPQRKSLSLKDPEKYEFRPKHLLKQIVHIYVHLARGDTNSIFPAAISKDGRSYNDQLFSAGADVLHRIGEDGRIIQEFIQLGAKAKVAASEAMDAEATLGEIPDEFLDPIQYTLMKDPVILPSSRITVDRPVIQRHLLSDSTDPFNRSHLTADMLIPDDALKARIEEFVRSQEMKKHLSLQSTKATIQTTNGETMLVD*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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