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Report for Sequence Feature Glyma19g03370
Feature Type: gene_model
Chromosome: Gm19
Start: 3362121
stop: 3370490
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma19g03370
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT5G15400 AT
Annotation by Michelle Graham. TAIR10: U-box domain-containing protein | chr5:4997764-5002907 REVERSE LENGTH=1038
SoyBase E_val: 0 ISS
GO:0006511 GO-bp
Annotation by Michelle Graham. GO Biological Process: ubiquitin-dependent protein catabolic process
SoyBase N/A ISS
GO:0010413 GO-bp
Annotation by Michelle Graham. GO Biological Process: glucuronoxylan metabolic process
SoyBase N/A ISS
GO:0016567 GO-bp
Annotation by Michelle Graham. GO Biological Process: protein ubiquitination
SoyBase N/A ISS
GO:0045492 GO-bp
Annotation by Michelle Graham. GO Biological Process: xylan biosynthetic process
SoyBase N/A ISS
GO:0000151 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: ubiquitin ligase complex
SoyBase N/A ISS
GO:0005829 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cytosol
SoyBase N/A ISS
GO:0004842 GO-mf
Annotation by Michelle Graham. GO Molecular Function: ubiquitin-protein ligase activity
SoyBase N/A ISS
GO:0034450 GO-mf
Annotation by Michelle Graham. GO Molecular Function: ubiquitin-ubiquitin ligase activity
SoyBase N/A ISS
KOG2042
KOG
Ubiquitin fusion degradation protein-2
JGI ISS
PTHR13931 Panther
UBIQUITINATION FACTOR E4
JGI ISS
PTHR13931:SF2 Panther
UBIQUITINATION FACTOR E4B
JGI ISS
PF04564 PFAM
U-box domain
JGI ISS
PF10408 PFAM
Ubiquitin elongating factor core
JGI ISS
UniRef100_B9T3S8 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Ubiquitin-protein ligase, putative n=1 Tax=Ricinus communis RepID=B9T3S8_RICCO
SoyBase E_val: 0 ISS
UniRef100_I1N691 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N691_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma19g03370
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma19g03370
Paralog Evidence Comments
Glyma13g05850 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma19g03370 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.19g027200 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma19g03370
Coding sequences of Glyma19g03370
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma19g03370.1 sequence type=CDS gene model=Glyma19g03370 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCGGCGGCGAAACCCCAACGCACTCCGCAGGAAGTGGAGGACATCGTCATCCGCAAAATCTTTCTAGTCTCGATCACCGAAATCGCCACCACTACGGATTCGAGAATCGTGTATTTAGAACTGACCGCGGCCGAGATTCTCAGCGAGGACAAGGAGCTCCGCCTCTCGCGCGATTGCATGGAGAGGGTTTTAATCGACCGTCTCTCCGGCGAATTCGCCGGAGCCGTAGACGAGTCTCCGTTCCAGTACCTCGTTGGCTGTTACCACCGAGCGCACGAGGAAGGCAAGAAAATCGCGAACATGAAGGACAAAACCCTACGGTCGGAGATGGAGGCGGTGGTGAGGCAGGCCAAGAAGCTCTGCGTCAACTACTGCCGGATTCATTTAGCAAATCCCGAGCTCTTTCCGAGCCGGGGTTCGGCGAATTCGGGCGGTGCCAATTCGCCGTTGCTGTCGCTGATTTTGGCGGAGGTAGGCGGCGGGAACGTGTTCGGCGGTGGCGGCGGAGGGGCAAAGAGTCCGCCGGGGTTTCTGGAGGAGTTTTTCAGGGACCCGGATTTTGACAGCTTGGACAAGATTCTAAAGGGTTTGTATGAGGAGCTGAGAGGGAGTGTGATGAAGGTTTCTGCTCTTGGGAACTTTCAGGACTCATTGAGGGCTTTGTTGTATTTGGTTAGGTTTCCCGTTGGTGCTAAGTCTCTTGTGAATCATGAATGGTGGATTCCCAAAGGGGTTTATATGAATGGCCGTGCTATTGAGATGACCAGCATTTTGGGTCCCTTTTTTCATATCAGTGCTCTTCCTGATCATGCTTTTTTCAAGGGCCAGCCTGATGTTGGGCAGCAGTGTTTTTCTGATGCATCAACTAGGCGGCCTGCTGATTTGTTATCTTCATTTTCCACCATCAAAACTGTCATGAACAACTTATATGATGGCCTAGCTGAAGTACTCCTCATCCTCCTTAAAAGCCAAGATACTCGTGAAAGTGTACTTGAGTATCTTGCGGAGGCGATCAATATAAATGCATCCAGGGCTCATATACAGGTTGACCCTATTACTTGTGCAAGTTCAGGCATGTTTGTAAATCTCAGTGCTGTCATGCTTCGTTTATGTGAGCCATTTTTAGATGCAAATTTAACAAAAAGGGATAAAATTGATGCAAAATATGTGCACTGCTCAAACCGCTTGAAGCTAAGTGGGTTGACTGCTCTTCATGCATCATCAGAAGAAGTTACTGAATGGCTTAATAGTAAAAACCCAGCTACAACTGGGGCAACCAATCAATATAGTGATGATCAAAAACGCTTGCAACAATCCCAAGAGGCCAGCAGTTCTGGTAGTAATAATTTTGGTGAGCTGTCAAATGAAAATTCTGCACGTGCTGAAAAGACAAAATATTCATTTATTTGTGAATGCTTCTTTATGACCGCAAGAGTGCTCAACTTGGGCCTTTTAAAAGCATTTTCTGACTTCAAACACTTAGTTCAGGATATTTCTCGGTGTGAAGATGCTCTTGCCACACTTAAAGCCATGCAGGAGCGGACACCCACCCCTCAGGCAGAATTGGATATAAATCGGCTTGAGAAAGAAATGGAGTTGTACTCACAGGAAAAACTTTGTTATGAGGCTCAGATATTGAGGGATAACACTCTTATTCAAAATGCGCTTTCCTTGTACCGCTTGATGATTATTTGGTTGGTTGGCTTGGTGGGTGGATTTAAGATGCCTCTACCACCAACTTGCCCAATGGAATTTGCTACCATGCCTGAACATTTTGTGGAAGATGCCATGGAACTTTTAATATTTGCTTCCCGGATTCCAAAGGCCTTAGATGGAGTTGTGCTGGAAGAATTTATGAACTTTATAATTATGTTCATGGCCAGCCCTGAATTTATCAAAAACCCATATCTTAGAGCAAAGATGGTTGAAGTATTGAACTGCTGGATGCCCCGCAGGAGCGGCTCAACTGCTACAGCCACTCTATTTGAAGGCCACCAACTCTCTCTTGAGTATCTTGTGAGGAATCTTCTGAAACTCTACGTTGACATTGAGTTCACTGGTTCTCACACACAGTTCTATGACAAGTTTAACATCCGCCATAATATTGCTGAACTCCTTGAATACCTGTGGCAAGTCCCTAGTCATCGTAATGCTTGGAGACAGATTGCTAAAGAGGAGGAAAAGGGTGTCTATCTGAATTTCTTAAACTTTCTGATTAATGATAGTATTTATCTTCTTGATGAAAGTCTGAACAAAATTCTTGAGCTAAAAGAATTGGAGGCTGAGATGTCAAATACGGTCGAGTGGGAGCGACGACCAGTTCAAGAGAGGCAGGAGAGGACCCGGTTATTCCATTCTCAAGAAAATATTATTCGGATAGATATGAAGTTGGCAAACGAAGATGTCAGTATGCTTGCATTTACTTCAGAGCAGATTACTGCTCCATTCCTACTTCCCGAGATGGTTGAAAGAGTGGCTAGCATGCTCAATTACTTTCTGCTGCAATTGGTGGGTCCTCAAAGAAAATCGCTTAGTCTGAAGGATCCTGAGAAATATGAATTTCGTCCTAAGCATTTGCTAAAACAGATTGTGCACATATATGTTCATCTAGCTAGGGGTGACACGAATTCCATCTTCCCAGCTGCCATCTCAAAGGATGGCCGGTCATACAATGATCAGTTGTTTAGTGCTGGGGCAGATGTCCTTCACAGAATTGGGGAGGATGGGAGAATTATACAGGAATTTATTCAACTTGGTGCTAAAGCTAAAGTTGCTGCTTCAGAGGCAATGGATGCTGAAGCTACTCTAGGGGAGATACCAGATGAATTCCTGGATCCAATTCAATACACTTTGATGAAGGATCCAGTTATCTTGCCTTCTTCAAGGATCACGGTTGATCGTCCTGTCATTCAGAGGCATCTTCTTAGTGATAGTACTGACCCATTCAACCGTTCTCATCTTACTGCGGATATGTTGATTCCCGATGATGCGCTAAAAGCTAGAATTGAGGAGTTTGTCAGGTCTCAGGAAATGAAGAAACACTTGAGCCTACAGAGTACCAAGGCCACAATTCAGACTACAAATGGGGAAACAATGTTGGTTGATTAG
Predicted protein sequences of Glyma19g03370
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma19g03370.1 sequence type=predicted peptide gene model=Glyma19g03370 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MAAAKPQRTPQEVEDIVIRKIFLVSITEIATTTDSRIVYLELTAAEILSEDKELRLSRDCMERVLIDRLSGEFAGAVDESPFQYLVGCYHRAHEEGKKIANMKDKTLRSEMEAVVRQAKKLCVNYCRIHLANPELFPSRGSANSGGANSPLLSLILAEVGGGNVFGGGGGGAKSPPGFLEEFFRDPDFDSLDKILKGLYEELRGSVMKVSALGNFQDSLRALLYLVRFPVGAKSLVNHEWWIPKGVYMNGRAIEMTSILGPFFHISALPDHAFFKGQPDVGQQCFSDASTRRPADLLSSFSTIKTVMNNLYDGLAEVLLILLKSQDTRESVLEYLAEAININASRAHIQVDPITCASSGMFVNLSAVMLRLCEPFLDANLTKRDKIDAKYVHCSNRLKLSGLTALHASSEEVTEWLNSKNPATTGATNQYSDDQKRLQQSQEASSSGSNNFGELSNENSARAEKTKYSFICECFFMTARVLNLGLLKAFSDFKHLVQDISRCEDALATLKAMQERTPTPQAELDINRLEKEMELYSQEKLCYEAQILRDNTLIQNALSLYRLMIIWLVGLVGGFKMPLPPTCPMEFATMPEHFVEDAMELLIFASRIPKALDGVVLEEFMNFIIMFMASPEFIKNPYLRAKMVEVLNCWMPRRSGSTATATLFEGHQLSLEYLVRNLLKLYVDIEFTGSHTQFYDKFNIRHNIAELLEYLWQVPSHRNAWRQIAKEEEKGVYLNFLNFLINDSIYLLDESLNKILELKELEAEMSNTVEWERRPVQERQERTRLFHSQENIIRIDMKLANEDVSMLAFTSEQITAPFLLPEMVERVASMLNYFLLQLVGPQRKSLSLKDPEKYEFRPKHLLKQIVHIYVHLARGDTNSIFPAAISKDGRSYNDQLFSAGADVLHRIGEDGRIIQEFIQLGAKAKVAASEAMDAEATLGEIPDEFLDPIQYTLMKDPVILPSSRITVDRPVIQRHLLSDSTDPFNRSHLTADMLIPDDALKARIEEFVRSQEMKKHLSLQSTKATIQTTNGETMLVD*