Glyma19g03290 - SoyBase

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Report for Sequence Feature Glyma19g03290

Feature Type:	gene_model
Chromosome:	Gm19
Start:	3321967
stop:	3326662
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g03290

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G29200	AT	Annotation by Michelle Graham. TAIR10: chorismate mutase 1 \| chr3:11164582-11166258 REVERSE LENGTH=340	SoyBase	E_val: 4.00E-144	ISS
GO:0006007	GO-bp	Annotation by Michelle Graham. GO Biological Process: glucose catabolic process	SoyBase	N/A	ISS
GO:0009073	GO-bp	Annotation by Michelle Graham. GO Biological Process: aromatic amino acid family biosynthetic process	SoyBase	N/A	ISS
GO:0046417	GO-bp	Annotation by Michelle Graham. GO Biological Process: chorismate metabolic process	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009536	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plastid	SoyBase	N/A	ISS
GO:0004106	GO-mf	Annotation by Michelle Graham. GO Molecular Function: chorismate mutase activity	SoyBase	N/A	ISS
GO:0016688	GO-mf	Annotation by Michelle Graham. GO Molecular Function: L-ascorbate peroxidase activity	SoyBase	N/A	ISS
KOG0795	KOG	Chorismate mutase	JGI		ISS
PTHR21145	Panther	CHORISMATE MUTASE	JGI		ISS
PF01817	PFAM	Chorismate mutase type II	JGI		ISS
UniRef100_D0VBC0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Chorismate mutase 02 n=1 Tax=Vitis vinifera RepID=D0VBC0_VITVI	SoyBase	E_val: 2.00E-146	ISS
UniRef100_I1N690	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N690_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma19g03290

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g03290

Paralog	Evidence	Comments
Glyma13g05830	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g03290 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g027100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g03290

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma19g03290

Limit To All Plant Sequences

>Glyma19g03290.1   sequence type=CDS   gene model=Glyma19g03290   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGTCTAAGCTTTTAAGAGCAGCCACCACCATCTCAGTCCCTTCAACACCACCCACATGCGCTTTCCATCGCTCAACTCTCAGTGCTTCGATTTCCTTCAACCCCAATTCGAATTTCGCCCCCAAAACCAATCTTTCTCTCCGGGCACATGCGGCTTCCGTCGAGTCAGTGCCAACCAAGAAAAGAGTTGATGAGAGTGACAACCTGACCCTTGATCATATAAGACGTTCTTTAGTTCGTCAAGAGGATAGCATAATCTTCGGTCTCATTGAGCGAGCGCAATACTGTTACAATGAAGATACATATGACCCTGATGCCTTCTCCATGGATGGATTTCGTGGCTCGTTGGTTGAGTACATGGTCAGGGAAACTGAGAGGCTTCATGCCAAGGTGGGTAGGTACAAGAGCCCTGATGAGCATCCATTCTTTCCAGATGGCCTACCTGAACCAATGTTACCACCTTTGCAGTATCCTCAGGTGTTGCACCCTATTGCTGATTCAATTAATATAAATGAAAAAGTATGGAGTTTATACTTCAGAGTTCTTATTCCACAAATAGTCAAGCAAGGAGATGATGGTAACTCTGGATCCAGTGCTGTTTGTGATGTAATATGCTTGCAGGCTCTCTCAAAGAGAATTCATTATGGCAAATATGTAGCTGAGGCAAAATATCAAGCTAGTCCAGATTCATATAAAGATGCCATTATAGCACAGGACAAGGACAAGTTGATGGAATTGCTAACATATCCTGAAGTTGAAGAGGCAATTAAGAGGAGAGTTGACATGAAGACGAAGACTTATGGTCAAGAACTGGTTGTAACTACGAAGGAACATCGAACTGAACCTGTCTACAAAATAAATCCAAGCTTGGTTGCTGATCTATACAGTGATTGGATCATGCCATTGACAAAGGAAGTTCAAGTTGCCTATCTGTTGAGAAGGTTGGATTGA

Predicted protein sequences of Glyma19g03290

Limit To All Plant Sequences

>Glyma19g03290.1   sequence type=predicted peptide   gene model=Glyma19g03290   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MESKLLRAATTISVPSTPPTCAFHRSTLSASISFNPNSNFAPKTNLSLRAHAASVESVPTKKRVDESDNLTLDHIRRSLVRQEDSIIFGLIERAQYCYNEDTYDPDAFSMDGFRGSLVEYMVRETERLHAKVGRYKSPDEHPFFPDGLPEPMLPPLQYPQVLHPIADSININEKVWSLYFRVLIPQIVKQGDDGNSGSSAVCDVICLQALSKRIHYGKYVAEAKYQASPDSYKDAIIAQDKDKLMELLTYPEVEEAIKRRVDMKTKTYGQELVVTTKEHRTEPVYKINPSLVADLYSDWIMPLTKEVQVAYLLRRLD*

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