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Report for Sequence Feature Glyma19g03250
Feature Type: gene_model
Chromosome: Gm19
Start: 3290580
stop: 3295638
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma19g03250
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT3G29185 AT
Annotation by Michelle Graham. TAIR10: Domain of unknown function (DUF3598) | chr3:11155092-11157207 REVERSE LENGTH=396
SoyBase E_val: 1.00E-178 ISS
GO:0000023 GO-bp
Annotation by Michelle Graham. GO Biological Process: maltose metabolic process
SoyBase N/A ISS
GO:0006655 GO-bp
Annotation by Michelle Graham. GO Biological Process: phosphatidylglycerol biosynthetic process
SoyBase N/A ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0009793 GO-bp
Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy
SoyBase N/A ISS
GO:0010027 GO-bp
Annotation by Michelle Graham. GO Biological Process: thylakoid membrane organization
SoyBase N/A ISS
GO:0010103 GO-bp
Annotation by Michelle Graham. GO Biological Process: stomatal complex morphogenesis
SoyBase N/A ISS
GO:0016226 GO-bp
Annotation by Michelle Graham. GO Biological Process: iron-sulfur cluster assembly
SoyBase N/A ISS
GO:0019252 GO-bp
Annotation by Michelle Graham. GO Biological Process: starch biosynthetic process
SoyBase N/A ISS
GO:0019288 GO-bp
Annotation by Michelle Graham. GO Biological Process: isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway
SoyBase N/A ISS
GO:0043085 GO-bp
Annotation by Michelle Graham. GO Biological Process: positive regulation of catalytic activity
SoyBase N/A ISS
GO:0009507 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: chloroplast
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
PF12204 PFAM
Domain of unknown function (DUF3598)
JGI ISS
UniRef100_G3FF78 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: WRKY transcription factor 11-2 (Fragment) n=1 Tax=Dimocarpus longan RepID=G3FF78_9ROSI
SoyBase E_val: 4.00E-176 ISS
UniRef100_UPI000233EA41 UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI000233EA41 related cluster n=1 Tax=unknown RepID=UPI000233EA41
SoyBase E_val: 0 ISS
Expression Patterns of Glyma19g03250
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma19g03250
Paralog Evidence Comments
Glyma13g05750 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma19g03250 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.19g026800 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma19g03250
Transcripts of Glyma19g03250
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma19g03250.2 sequence type=transcript gene model=Glyma19g03250 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGAGAGTTACTCGAGAGAGAGATAAGATACGTTAGCGTAAACTGAATTTTGGTGGCACCTGAGATTCTGAGAAGAGACTCAACACAACAATGGCTTCTTCTTCTTCTTCTTCTTCTATTCAGTGTTCAGTTTGGGTTCCTTCCCTTCTCAACACTAACACTAACACTAACACCATTCACTTTCTTTCACTTAAACCAAACTCTATTACTTTCTCTTCTTCCTTTTCTTCTTCCCTCACCAGAATCAGAATCAGAGCCTCCTCTTCCTCCCCAACCGTTGAAGAAGCCGCTATGAGCATCGACAACCTCCGACGTTTCATCAACCTTAACTCCGGAAAGTGGAACGGCTCTTTCTATCAATTTGATTCGAGTGGAAATATGTTGCAACAACTGAGTACCAAGCTTTCCGCTAGCTCTTATGGGGAAGATGAACTCATGAGTCTCATTCAAACGCTGTATATTAAACAACCTTCATCAAGTACTTCAATTTCCGGAGATGACAATGATGCAGAATGGGCAGAGTACAAAATAAAAGAAACCAATATGTTTACTGTTGACAAATATCAACAAATAGGCTTTTTCCCATCTGAGAAAGCATTTGCACTGAGGTACCAAACAGCTGGCATGTTGGAAACAGTATTAAGGCAAGGTGTTCTGGGAGAAGATGACACTGGTGAAGAGTCGCCCAGAAATCTCAAGCTTCCCTCTCGGCGACCTTCTGTTGTATGTGAGAATTGCCTGTACTCTCTAGAGAGAGATATGAGAGCAAGAGCCTTTCACATTTTGGAGCCAAGAGGCACTGTAGATATGCTTATTGTCTTCCTAGAGGAAAGAAGTGATGGGGCTCCTCCTCTACTTGAGAGTTCTAGGGATGTGAAGAGTAGGATTATTCCTTTTCTTGGTAAATGGAAAGGTCATTCCATTACAAAACGAAGTGGTGTGTATGGATCTACAATTACTAATGCTGATACCGTTGTGTTACATGAGATGGATAACAATGGCCAACTAATTCAGGCACAGTATCAGACCATTTGGTTACATTTGATGGAGGTTATCAGATGATACTATTACCCGGTGGCATGTACATGGGGTGCCCTTGTGATGTAGCAAAAAGTGTGGCAGAATCAAAATCGTTCCATTTGGAGTTCTGTTGGTTGGAGACACCTGACAAGAGGCAAAGACTTGTTCGCACGTATGATATGCAAGGCTTGGCTGTCTCATCTACTTATTTTGTTGAGACCAAATTGTGAAATCCCATGTTACCTTTTTTCTCAAGTCGTCCAAATAGTTGGCTCATGTAATAAATACTCATATTTGTCGTTTGCATCCATTGATTGATTGATATATGATTGGTTAGTATACTTATTTTGAGCCTTTCGTGGAAATGTAGTTTAGTCGTAGAAAATCCAATACACGGGTAAACTTGATCATGCCAAATTTGAGGTCTGATTAGTCCAACCTCAGTTCAAATGATAGATATGGTCACTCATAAAAAAAGTTCCTCGGATTTAAACTGAGATTGGATTTGGATTCGGTACAAGAGAATAATTTTTTACTTAAATATATTTTTCCTTTTTGTAATTTCATGTTTATTTTTTATTTTGG
Coding sequences of Glyma19g03250
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma19g03250.1 sequence type=CDS gene model=Glyma19g03250 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCTTCTTCTTCTTCTTCTTCTTCTATTCAGTGTTCAGTTTGGGTTCCTTCCCTTCTCAACACTAACACTAACACTAACACCATTCACTTTCTTTCACTTAAACCAAACTCTATTACTTTCTCTTCTTCCTTTTCTTCTTCCCTCACCAGAATCAGAATCAGAGCCTCCTCTTCCTCCCCAACCGTTGAAGAAGCCGCTATGAGCATCGACAACCTCCGACGTTTCATCAACCTTAACTCCGGAAAGTGGAACGGCTCTTTCTATCAATTTGATTCGAGTGGAAATATGTTGCAACAACTGAGTACCAAGCTTTCCGCTAGCTCTTATGGGGAAGATGAACTCATGAGTCTCATTCAAACGCTGTATATTAAACAACCTTCATCAAGTACTTCAATTTCCGGAGATGACAATGATGCAGAATGGGCAGAGTACAAAATAAAAGAAACCAATATGTTTACTGTTGACAAATATCAACAAATAGGCTTTTTCCCATCTGAGAAAGCATTTGCACTGAGGTACCAAACAGCTGGCATGTTGGAAACAGTATTAAGGCAAGGTGTTCTGGGAGAAGATGACACTGGTGAAGAGTCGCCCAGAAATCTCAAGCTTCCCTCTCGGCGACCTTCTGTTGTATGTGAGAATTGCCTGTACTCTCTAGAGAGAGATATGAGAGCAAGAGCCTTTCACATTTTGGAGCCAAGAGGCACTGTAGATATGCTTATTGTCTTCCTAGAGGAAAGAAGTGATGGGGCTCCTCCTCTACTTGAGAGTTCTAGGGATGTGAAGAGTAGGATTATTCCTTTTCTTGGTAAATGGAAAGGTCATTCCATTACAAAACGAAGTGGTGTGTATGGATCTACAATTACTAATGCTGATACCGTTGTGTTACATGAGATGGATAACAATGGCCAACTAATTCAGGATGTTACTTCAAGTTCAACTTCTGATGGGGAAAATGTTACTACCAATGTGCATTGGACAGGCACAGTATCAGACCATTTGGTTACATTTGATGGAGGTTATCAGATGATACTATTACCCGGTGGCATGTACATGGGGTGCCCTTGTGATGTAGCAAAAAGTGTGGCAGAATCAAAATCGTTCCATTTGGAGTTCTGTTGGTTGGAGACACCTGACAAGAGGCAAAGACTTGTTCGCACGTATGATATGCAAGGCTTGGCTGTCTCATCTACTTATTTTGTTGAGACCAAATTGTGA
>Glyma19g03250.2 sequence type=CDS gene model=Glyma19g03250 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCTTCTTCTTCTTCTTCTTCTTCTATTCAGTGTTCAGTTTGGGTTCCTTCCCTTCTCAACACTAACACTAACACTAACACCATTCACTTTCTTTCACTTAAACCAAACTCTATTACTTTCTCTTCTTCCTTTTCTTCTTCCCTCACCAGAATCAGAATCAGAGCCTCCTCTTCCTCCCCAACCGTTGAAGAAGCCGCTATGAGCATCGACAACCTCCGACGTTTCATCAACCTTAACTCCGGAAAGTGGAACGGCTCTTTCTATCAATTTGATTCGAGTGGAAATATGTTGCAACAACTGAGTACCAAGCTTTCCGCTAGCTCTTATGGGGAAGATGAACTCATGAGTCTCATTCAAACGCTGTATATTAAACAACCTTCATCAAGTACTTCAATTTCCGGAGATGACAATGATGCAGAATGGGCAGAGTACAAAATAAAAGAAACCAATATGTTTACTGTTGACAAATATCAACAAATAGGCTTTTTCCCATCTGAGAAAGCATTTGCACTGAGGTACCAAACAGCTGGCATGTTGGAAACAGTATTAAGGCAAGGTGTTCTGGGAGAAGATGACACTGGTGAAGAGTCGCCCAGAAATCTCAAGCTTCCCTCTCGGCGACCTTCTGTTGTATGTGAGAATTGCCTGTACTCTCTAGAGAGAGATATGAGAGCAAGAGCCTTTCACATTTTGGAGCCAAGAGGCACTGTAGATATGCTTATTGTCTTCCTAGAGGAAAGAAGTGATGGGGCTCCTCCTCTACTTGAGAGTTCTAGGGATGTGAAGAGTAGGATTATTCCTTTTCTTGGTAAATGGAAAGGTCATTCCATTACAAAACGAAGTGGTGTGTATGGATCTACAATTACTAATGCTGATACCGTTGTGTTACATGAGATGGATAACAATGGCCAACTAATTCAGGCACAGTATCAGACCATTTGGTTACATTTGATGGAGGTTATCAGATGA
Predicted protein sequences of Glyma19g03250
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma19g03250.1 sequence type=predicted peptide gene model=Glyma19g03250 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MASSSSSSSIQCSVWVPSLLNTNTNTNTIHFLSLKPNSITFSSSFSSSLTRIRIRASSSSPTVEEAAMSIDNLRRFINLNSGKWNGSFYQFDSSGNMLQQLSTKLSASSYGEDELMSLIQTLYIKQPSSSTSISGDDNDAEWAEYKIKETNMFTVDKYQQIGFFPSEKAFALRYQTAGMLETVLRQGVLGEDDTGEESPRNLKLPSRRPSVVCENCLYSLERDMRARAFHILEPRGTVDMLIVFLEERSDGAPPLLESSRDVKSRIIPFLGKWKGHSITKRSGVYGSTITNADTVVLHEMDNNGQLIQDVTSSSTSDGENVTTNVHWTGTVSDHLVTFDGGYQMILLPGGMYMGCPCDVAKSVAESKSFHLEFCWLETPDKRQRLVRTYDMQGLAVSSTYFVETKL*
>Glyma19g03250.2 sequence type=predicted peptide gene model=Glyma19g03250 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MASSSSSSSIQCSVWVPSLLNTNTNTNTIHFLSLKPNSITFSSSFSSSLTRIRIRASSSSPTVEEAAMSIDNLRRFINLNSGKWNGSFYQFDSSGNMLQQLSTKLSASSYGEDELMSLIQTLYIKQPSSSTSISGDDNDAEWAEYKIKETNMFTVDKYQQIGFFPSEKAFALRYQTAGMLETVLRQGVLGEDDTGEESPRNLKLPSRRPSVVCENCLYSLERDMRARAFHILEPRGTVDMLIVFLEERSDGAPPLLESSRDVKSRIIPFLGKWKGHSITKRSGVYGSTITNADTVVLHEMDNNGQLIQAQYQTIWLHLMEVIR*