SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G29185 | AT | Annotation by Michelle Graham. TAIR10: Domain of unknown function (DUF3598) | chr3:11155092-11157207 REVERSE LENGTH=396 | SoyBase | E_val: 1.00E-178 | ISS |
| GO:0000023 | GO-bp | Annotation by Michelle Graham. GO Biological Process: maltose metabolic process | SoyBase | N/A | ISS |
| GO:0006655 | GO-bp | Annotation by Michelle Graham. GO Biological Process: phosphatidylglycerol biosynthetic process | SoyBase | N/A | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0009793 | GO-bp | Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy | SoyBase | N/A | ISS |
| GO:0010027 | GO-bp | Annotation by Michelle Graham. GO Biological Process: thylakoid membrane organization | SoyBase | N/A | ISS |
| GO:0010103 | GO-bp | Annotation by Michelle Graham. GO Biological Process: stomatal complex morphogenesis | SoyBase | N/A | ISS |
| GO:0016226 | GO-bp | Annotation by Michelle Graham. GO Biological Process: iron-sulfur cluster assembly | SoyBase | N/A | ISS |
| GO:0019252 | GO-bp | Annotation by Michelle Graham. GO Biological Process: starch biosynthetic process | SoyBase | N/A | ISS |
| GO:0019288 | GO-bp | Annotation by Michelle Graham. GO Biological Process: isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway | SoyBase | N/A | ISS |
| GO:0043085 | GO-bp | Annotation by Michelle Graham. GO Biological Process: positive regulation of catalytic activity | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| PF12204 | PFAM | Domain of unknown function (DUF3598) | JGI | ISS | |
| UniRef100_G3FF78 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: WRKY transcription factor 11-2 (Fragment) n=1 Tax=Dimocarpus longan RepID=G3FF78_9ROSI | SoyBase | E_val: 4.00E-176 | ISS |
| UniRef100_UPI000233EA41 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233EA41 related cluster n=1 Tax=unknown RepID=UPI000233EA41 | SoyBase | E_val: 0 | ISS |
|
Glyma19g03250 not represented in the dataset |
Glyma19g03250 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma13g05750 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.19g026800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma19g03250.2 sequence type=transcript gene model=Glyma19g03250 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAGAGTTACTCGAGAGAGAGATAAGATACGTTAGCGTAAACTGAATTTTGGTGGCACCTGAGATTCTGAGAAGAGACTCAACACAACAATGGCTTCTTCTTCTTCTTCTTCTTCTATTCAGTGTTCAGTTTGGGTTCCTTCCCTTCTCAACACTAACACTAACACTAACACCATTCACTTTCTTTCACTTAAACCAAACTCTATTACTTTCTCTTCTTCCTTTTCTTCTTCCCTCACCAGAATCAGAATCAGAGCCTCCTCTTCCTCCCCAACCGTTGAAGAAGCCGCTATGAGCATCGACAACCTCCGACGTTTCATCAACCTTAACTCCGGAAAGTGGAACGGCTCTTTCTATCAATTTGATTCGAGTGGAAATATGTTGCAACAACTGAGTACCAAGCTTTCCGCTAGCTCTTATGGGGAAGATGAACTCATGAGTCTCATTCAAACGCTGTATATTAAACAACCTTCATCAAGTACTTCAATTTCCGGAGATGACAATGATGCAGAATGGGCAGAGTACAAAATAAAAGAAACCAATATGTTTACTGTTGACAAATATCAACAAATAGGCTTTTTCCCATCTGAGAAAGCATTTGCACTGAGGTACCAAACAGCTGGCATGTTGGAAACAGTATTAAGGCAAGGTGTTCTGGGAGAAGATGACACTGGTGAAGAGTCGCCCAGAAATCTCAAGCTTCCCTCTCGGCGACCTTCTGTTGTATGTGAGAATTGCCTGTACTCTCTAGAGAGAGATATGAGAGCAAGAGCCTTTCACATTTTGGAGCCAAGAGGCACTGTAGATATGCTTATTGTCTTCCTAGAGGAAAGAAGTGATGGGGCTCCTCCTCTACTTGAGAGTTCTAGGGATGTGAAGAGTAGGATTATTCCTTTTCTTGGTAAATGGAAAGGTCATTCCATTACAAAACGAAGTGGTGTGTATGGATCTACAATTACTAATGCTGATACCGTTGTGTTACATGAGATGGATAACAATGGCCAACTAATTCAGGCACAGTATCAGACCATTTGGTTACATTTGATGGAGGTTATCAGATGATACTATTACCCGGTGGCATGTACATGGGGTGCCCTTGTGATGTAGCAAAAAGTGTGGCAGAATCAAAATCGTTCCATTTGGAGTTCTGTTGGTTGGAGACACCTGACAAGAGGCAAAGACTTGTTCGCACGTATGATATGCAAGGCTTGGCTGTCTCATCTACTTATTTTGTTGAGACCAAATTGTGAAATCCCATGTTACCTTTTTTCTCAAGTCGTCCAAATAGTTGGCTCATGTAATAAATACTCATATTTGTCGTTTGCATCCATTGATTGATTGATATATGATTGGTTAGTATACTTATTTTGAGCCTTTCGTGGAAATGTAGTTTAGTCGTAGAAAATCCAATACACGGGTAAACTTGATCATGCCAAATTTGAGGTCTGATTAGTCCAACCTCAGTTCAAATGATAGATATGGTCACTCATAAAAAAAGTTCCTCGGATTTAAACTGAGATTGGATTTGGATTCGGTACAAGAGAATAATTTTTTACTTAAATATATTTTTCCTTTTTGTAATTTCATGTTTATTTTTTATTTTGG
>Glyma19g03250.1 sequence type=CDS gene model=Glyma19g03250 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTTCTTCTTCTTCTTCTTCTTCTATTCAGTGTTCAGTTTGGGTTCCTTCCCTTCTCAACACTAACACTAACACTAACACCATTCACTTTCTTTCACTTAAACCAAACTCTATTACTTTCTCTTCTTCCTTTTCTTCTTCCCTCACCAGAATCAGAATCAGAGCCTCCTCTTCCTCCCCAACCGTTGAAGAAGCCGCTATGAGCATCGACAACCTCCGACGTTTCATCAACCTTAACTCCGGAAAGTGGAACGGCTCTTTCTATCAATTTGATTCGAGTGGAAATATGTTGCAACAACTGAGTACCAAGCTTTCCGCTAGCTCTTATGGGGAAGATGAACTCATGAGTCTCATTCAAACGCTGTATATTAAACAACCTTCATCAAGTACTTCAATTTCCGGAGATGACAATGATGCAGAATGGGCAGAGTACAAAATAAAAGAAACCAATATGTTTACTGTTGACAAATATCAACAAATAGGCTTTTTCCCATCTGAGAAAGCATTTGCACTGAGGTACCAAACAGCTGGCATGTTGGAAACAGTATTAAGGCAAGGTGTTCTGGGAGAAGATGACACTGGTGAAGAGTCGCCCAGAAATCTCAAGCTTCCCTCTCGGCGACCTTCTGTTGTATGTGAGAATTGCCTGTACTCTCTAGAGAGAGATATGAGAGCAAGAGCCTTTCACATTTTGGAGCCAAGAGGCACTGTAGATATGCTTATTGTCTTCCTAGAGGAAAGAAGTGATGGGGCTCCTCCTCTACTTGAGAGTTCTAGGGATGTGAAGAGTAGGATTATTCCTTTTCTTGGTAAATGGAAAGGTCATTCCATTACAAAACGAAGTGGTGTGTATGGATCTACAATTACTAATGCTGATACCGTTGTGTTACATGAGATGGATAACAATGGCCAACTAATTCAGGATGTTACTTCAAGTTCAACTTCTGATGGGGAAAATGTTACTACCAATGTGCATTGGACAGGCACAGTATCAGACCATTTGGTTACATTTGATGGAGGTTATCAGATGATACTATTACCCGGTGGCATGTACATGGGGTGCCCTTGTGATGTAGCAAAAAGTGTGGCAGAATCAAAATCGTTCCATTTGGAGTTCTGTTGGTTGGAGACACCTGACAAGAGGCAAAGACTTGTTCGCACGTATGATATGCAAGGCTTGGCTGTCTCATCTACTTATTTTGTTGAGACCAAATTGTGA >Glyma19g03250.2 sequence type=CDS gene model=Glyma19g03250 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTTCTTCTTCTTCTTCTTCTTCTATTCAGTGTTCAGTTTGGGTTCCTTCCCTTCTCAACACTAACACTAACACTAACACCATTCACTTTCTTTCACTTAAACCAAACTCTATTACTTTCTCTTCTTCCTTTTCTTCTTCCCTCACCAGAATCAGAATCAGAGCCTCCTCTTCCTCCCCAACCGTTGAAGAAGCCGCTATGAGCATCGACAACCTCCGACGTTTCATCAACCTTAACTCCGGAAAGTGGAACGGCTCTTTCTATCAATTTGATTCGAGTGGAAATATGTTGCAACAACTGAGTACCAAGCTTTCCGCTAGCTCTTATGGGGAAGATGAACTCATGAGTCTCATTCAAACGCTGTATATTAAACAACCTTCATCAAGTACTTCAATTTCCGGAGATGACAATGATGCAGAATGGGCAGAGTACAAAATAAAAGAAACCAATATGTTTACTGTTGACAAATATCAACAAATAGGCTTTTTCCCATCTGAGAAAGCATTTGCACTGAGGTACCAAACAGCTGGCATGTTGGAAACAGTATTAAGGCAAGGTGTTCTGGGAGAAGATGACACTGGTGAAGAGTCGCCCAGAAATCTCAAGCTTCCCTCTCGGCGACCTTCTGTTGTATGTGAGAATTGCCTGTACTCTCTAGAGAGAGATATGAGAGCAAGAGCCTTTCACATTTTGGAGCCAAGAGGCACTGTAGATATGCTTATTGTCTTCCTAGAGGAAAGAAGTGATGGGGCTCCTCCTCTACTTGAGAGTTCTAGGGATGTGAAGAGTAGGATTATTCCTTTTCTTGGTAAATGGAAAGGTCATTCCATTACAAAACGAAGTGGTGTGTATGGATCTACAATTACTAATGCTGATACCGTTGTGTTACATGAGATGGATAACAATGGCCAACTAATTCAGGCACAGTATCAGACCATTTGGTTACATTTGATGGAGGTTATCAGATGA
>Glyma19g03250.1 sequence type=predicted peptide gene model=Glyma19g03250 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MASSSSSSSIQCSVWVPSLLNTNTNTNTIHFLSLKPNSITFSSSFSSSLTRIRIRASSSSPTVEEAAMSIDNLRRFINLNSGKWNGSFYQFDSSGNMLQQLSTKLSASSYGEDELMSLIQTLYIKQPSSSTSISGDDNDAEWAEYKIKETNMFTVDKYQQIGFFPSEKAFALRYQTAGMLETVLRQGVLGEDDTGEESPRNLKLPSRRPSVVCENCLYSLERDMRARAFHILEPRGTVDMLIVFLEERSDGAPPLLESSRDVKSRIIPFLGKWKGHSITKRSGVYGSTITNADTVVLHEMDNNGQLIQDVTSSSTSDGENVTTNVHWTGTVSDHLVTFDGGYQMILLPGGMYMGCPCDVAKSVAESKSFHLEFCWLETPDKRQRLVRTYDMQGLAVSSTYFVETKL* >Glyma19g03250.2 sequence type=predicted peptide gene model=Glyma19g03250 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MASSSSSSSIQCSVWVPSLLNTNTNTNTIHFLSLKPNSITFSSSFSSSLTRIRIRASSSSPTVEEAAMSIDNLRRFINLNSGKWNGSFYQFDSSGNMLQQLSTKLSASSYGEDELMSLIQTLYIKQPSSSTSISGDDNDAEWAEYKIKETNMFTVDKYQQIGFFPSEKAFALRYQTAGMLETVLRQGVLGEDDTGEESPRNLKLPSRRPSVVCENCLYSLERDMRARAFHILEPRGTVDMLIVFLEERSDGAPPLLESSRDVKSRIIPFLGKWKGHSITKRSGVYGSTITNADTVVLHEMDNNGQLIQAQYQTIWLHLMEVIR*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
