SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G11670 | AT | Annotation by Michelle Graham. TAIR10: UDP-Glycosyltransferase superfamily protein | chr3:3681090-3684495 REVERSE LENGTH=808 | SoyBase | E_val: 2.00E-122 | ISS |
| GO:0001666 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to hypoxia | SoyBase | N/A | ISS |
| GO:0006636 | GO-bp | Annotation by Michelle Graham. GO Biological Process: unsaturated fatty acid biosynthetic process | SoyBase | N/A | ISS |
| GO:0006655 | GO-bp | Annotation by Michelle Graham. GO Biological Process: phosphatidylglycerol biosynthetic process | SoyBase | N/A | ISS |
| GO:0006869 | GO-bp | Annotation by Michelle Graham. GO Biological Process: lipid transport | SoyBase | N/A | ISS |
| GO:0009058 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biosynthetic process | SoyBase | N/A | ISS |
| GO:0015995 | GO-bp | Annotation by Michelle Graham. GO Biological Process: chlorophyll biosynthetic process | SoyBase | N/A | ISS |
| GO:0016036 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cellular response to phosphate starvation | SoyBase | N/A | ISS |
| GO:0016117 | GO-bp | Annotation by Michelle Graham. GO Biological Process: carotenoid biosynthetic process | SoyBase | N/A | ISS |
| GO:0019288 | GO-bp | Annotation by Michelle Graham. GO Biological Process: isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway | SoyBase | N/A | ISS |
| GO:0019375 | GO-bp | Annotation by Michelle Graham. GO Biological Process: galactolipid biosynthetic process | SoyBase | N/A | ISS |
| GO:0042550 | GO-bp | Annotation by Michelle Graham. GO Biological Process: photosystem I stabilization | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0009707 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast outer membrane | SoyBase | N/A | ISS |
| GO:0016757 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring glycosyl groups | SoyBase | N/A | ISS |
| GO:0035250 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: UDP-galactosyltransferase activity | SoyBase | N/A | ISS |
| GO:0046480 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: galactolipid galactosyltransferase activity | SoyBase | N/A | ISS |
| PTHR12526 | Panther | GLYCOSYLTRANSFERASE | JGI | ISS | |
| PTHR12526:SF202 | Panther | OS11G0158400 PROTEIN | JGI | ISS | |
| UniRef100_I1JQ87 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JQ87_SOYBN | SoyBase | E_val: 5.00E-162 | ISS |
| UniRef100_Q6DW76 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Digalactosyldiacylglycerol synthase 1, chloroplastic n=1 Tax=Glycine max RepID=DGDG1_SOYBN | SoyBase | E_val: 5.00E-159 | ISS |
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Glyma19g03180 not represented in the dataset |
Glyma19g03180 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma19g03180.1 sequence type=CDS gene model=Glyma19g03180 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GTTCTTCGTCTCTCTGCTGCTACTCAGGATTTACCAAAGTCTGTAATTTGCAATGTTCATGGTGTGAATCCCGAATTCTTGAAAATTGGAGAAAAGATTGCTGCAGAGAGGGAGCTGGGGCAGAAAGCCTTTACAAAAGGGGCATATTTCCTGGGAAAGATGGTGTGGGGAAAGGGATATAAGGAGTTGATAGATTTATTAGCAAAGCATAAGGCTGACCTTGATGGTTTCAAGTTGGATGTATTTGGAAATGGAGAGGATGCTAATGAAGTTCAGAGTGCAGCCAGAAGGTTGGATTTGAATCTCAACTTTCAGAAAGGAAGAGATCATGCAGACGATTCTCTTCATGGGTACAAAGTCTTTATAAATCCTAGCATTAGCACTTGCCATGGGCAAATTTTAGTTTGTGCTGATCATCCATCAAATGAGTTCTTCAGGTCATTTCCCAACTGTTTGACTTACAGGACATCCAAAGACTTTGTAGCAAAAGTAAAAGAAGCATTGGAAAATGAGCCTTATCCTCTAACACCTGAGCAAAGATATCAACTTTCTTGGGAGGCTGCTACTCAAAGATTTATGGAATATTCCGAGCTTGATAGGATCCTGAACATGGAAAATAATGGTGAAAAGGAAAGTGTAGATAAGGGAAAGCTCATTGCTAAGTCAGCATCAATGCCTAATCTGACAGAACTAGTAGATGGAGGCTTAGCATTTGCTCACTATTGTCTTATTGGGAATTAA
>Glyma19g03180.1 sequence type=predicted peptide gene model=Glyma19g03180 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high VLRLSAATQDLPKSVICNVHGVNPEFLKIGEKIAAERELGQKAFTKGAYFLGKMVWGKGYKELIDLLAKHKADLDGFKLDVFGNGEDANEVQSAARRLDLNLNFQKGRDHADDSLHGYKVFINPSISTCHGQILVCADHPSNEFFRSFPNCLTYRTSKDFVAKVKEALENEPYPLTPEQRYQLSWEAATQRFMEYSELDRILNMENNGEKESVDKGKLIAKSASMPNLTELVDGGLAFAHYCLIGN*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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