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Report for Sequence Feature Glyma19g03150

Feature Type:gene_model
Chromosome:Gm19
Start:3251869
stop:3260411
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma19g03150
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G09180AT Annotation by Michelle Graham. TAIR10: CONTAINS InterPro DOMAIN/s: Mediator complex subunit Med27 (InterPro:IPR021627); Has 112 Blast hits to 112 proteins in 38 species: Archae - 0; Bacteria - 0; Metazoa - 79; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). | chr3:2819278-2821096 FORWARD LENGTH=402 SoyBaseE_val: 5.00E-171ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0046482GO-bp Annotation by Michelle Graham. GO Biological Process: para-aminobenzoic acid metabolic process SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0016592GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mediator complex SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
PTHR13130Panther 34 KDA TRANSCRIPTIONAL CO-ACTIVATOR-RELATED JGI ISS
PTHR13130:SF2Panther 34 KDA TRANSCRIPTIONAL CO-ACTIVATOR JGI ISS
PF11571PFAM Mediator complex subunit 27 JGI ISS
UniRef100_I1N684UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1N684_SOYBN SoyBaseE_val: 0ISS
UniRef100_Q8RWM3UniRef Annotation by Michelle Graham. Most informative UniRef hit: Mediator of RNA polymerase II transcription subunit 27 n=1 Tax=Arabidopsis thaliana RepID=MED27_ARATH SoyBaseE_val: 3.00E-168ISS

Expression Patterns of Glyma19g03150
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma19g03150 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.19g026300 Wm82.a2.v1IGC As supplied by JGI

References for Glyma19g03150
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma19g03150
>Glyma19g03150.1   sequence type=CDS   gene model=Glyma19g03150   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCAACAAACGCAGCAGCAGGCCACGGCGACACCATTCTCGACCTGCACTCCTCCTCCTTCCTCCGGTGGCTCCGCGTCCGAGGCACCGCCAAAGCAGGTGGCTCAAGCAATGGACAAGCTCGGACAGGCCGAACGAATCATCGCCGACATCCGAATCGGCGCCGACCGCCTCCTCGAAGCGCTCTTCGTCGCGGCGGCGCAGCCTCACCAAGGCAACAAGCCTCTCCAAGTCTTCCTCAAAGAAGACGCATGCATGCGTCAGTATCTTCAAGACCTTCGATCGCTTGGTAAGGAGCTAGAAGAGTCTGGAGTTCTCAGCGAATCAGTTCGATCGAGGAAAGATTTTTGGGGCTTGCATATGCCACTGGTTTGTCCAGATGGCGCTGTGGTTGCGTATGCGTGGAAACGACAACTTGCAGGACAAGCAGGTGCTTCGGCCGTTGACAGGACCAGGTTAGCTCTCAAAGCTTTCACTGATCAGAAAAGGCGTTTTTTCCCACATCTTGATGATGGACTTGAAACTAGTGAATCAGCATCGAAGAAATGTTGTGGGTCTGAAGAAATTGCAGTGGATCCCAAGGAAGGAATTAGTTTTCTAAGGACGCTGCCGGATGTTCTGAAGTCCTTGGAGAAGGATGTACCAAATCTGAAAATATTAACTTTTGAACGATTGGACTGGTTAAAAAGAGCTTCCACACTTACCTCGTCAACAAATGAGAATTCTTTGGAACATAACTATCATGGTTCGAATAAGCTAAGGCTAGGATCAGTGGGAACCGTCCCTGCAGAGAAGGTTGCAGTGATAGAATTGTTATTCCCGTGTGTCTTCAGGGCTGTTATATCCTTACATCCTGCTGGTTCCATGGATCCAGATGCTGTAGCTTTCTTTGCTCCAGATGAGAGCGGAAGTTATGTGCATGCAAGGGGGTTTTCAGTTCATCATGTGTTTAGACATATTACGGAGTATGCAGCAACAGCTCTGCAGTATTTTCTTGGGAACCAATCTGAAACGTGTCTGTATTTTCTTCTGCACTGGATTTGCAGCTACCAGACACTGTTTTCAAGACCTTGCAGCAAATGTTCCCGGCTACTTGCAATGGATAAACAATCAACTTTATTGTTACCTCCAGTTCATCGTCCTTATTGGCAGTTTTCCTTTTCTAAAATTTTGTTGAACATATCCTCAAAGGACCAGAATTCTGATACTACTCAGGCTTATCATATTGACTGCCTCTCTGAGGAAACATAA
Predicted protein sequences of Glyma19g03150
>Glyma19g03150.1   sequence type=predicted peptide   gene model=Glyma19g03150   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MQQTQQQATATPFSTCTPPPSSGGSASEAPPKQVAQAMDKLGQAERIIADIRIGADRLLEALFVAAAQPHQGNKPLQVFLKEDACMRQYLQDLRSLGKELEESGVLSESVRSRKDFWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLDDGLETSESASKKCCGSEEIAVDPKEGISFLRTLPDVLKSLEKDVPNLKILTFERLDWLKRASTLTSSTNENSLEHNYHGSNKLRLGSVGTVPAEKVAVIELLFPCVFRAVISLHPAGSMDPDAVAFFAPDESGSYVHARGFSVHHVFRHITEYAATALQYFLGNQSETCLYFLLHWICSYQTLFSRPCSKCSRLLAMDKQSTLLLPPVHRPYWQFSFSKILLNISSKDQNSDTTQAYHIDCLSEET*






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