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Report for Sequence Feature Glyma19g03131

Feature Type:gene_model
Chromosome:Gm19
Start:3240403
stop:3241262
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma19g03131
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G01090AT Annotation by Michelle Graham. TAIR10: SNF1 kinase homolog 10 | chr3:31437-33977 REVERSE LENGTH=512 SoyBaseE_val: 4.00E-48ISS
GO:0003006GO-bp Annotation by Michelle Graham. GO Biological Process: developmental process involved in reproduction SoyBaseN/AISS
GO:0006007GO-bp Annotation by Michelle Graham. GO Biological Process: glucose catabolic process SoyBaseN/AISS
GO:0006468GO-bp Annotation by Michelle Graham. GO Biological Process: protein phosphorylation SoyBaseN/AISS
GO:0006486GO-bp Annotation by Michelle Graham. GO Biological Process: protein glycosylation SoyBaseN/AISS
GO:0009594GO-bp Annotation by Michelle Graham. GO Biological Process: detection of nutrient SoyBaseN/AISS
GO:0009738GO-bp Annotation by Michelle Graham. GO Biological Process: abscisic acid mediated signaling pathway SoyBaseN/AISS
GO:0010050GO-bp Annotation by Michelle Graham. GO Biological Process: vegetative phase change SoyBaseN/AISS
GO:0010182GO-bp Annotation by Michelle Graham. GO Biological Process: sugar mediated signaling pathway SoyBaseN/AISS
GO:0010260GO-bp Annotation by Michelle Graham. GO Biological Process: organ senescence SoyBaseN/AISS
GO:0080022GO-bp Annotation by Michelle Graham. GO Biological Process: primary root development SoyBaseN/AISS
GO:0000152GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nuclear ubiquitin ligase complex SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0004672GO-mf Annotation by Michelle Graham. GO Molecular Function: protein kinase activity SoyBaseN/AISS
GO:0004674GO-mf Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
PF02149PFAM Kinase associated domain 1 JGI ISS
UniRef100_I1LWN1UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LWN1_SOYBN SoyBaseE_val: 1.00E-62ISS
UniRef100_Q53VM4UniRef Annotation by Michelle Graham. Most informative UniRef hit: Ser/Thr protein kinase n=1 Tax=Lotus japonicus RepID=Q53VM4_LOTJA SoyBaseE_val: 4.00E-54ISS

Expression Patterns of Glyma19g03131
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma19g03131 not represented in the dataset
Glyma19g03131 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g03131
ParalogEvidenceComments
Glyma13g05700 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g03131 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.19g026100 Wm82.a2.v1IGC As supplied by JGI

References for Glyma19g03131
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma19g03131
>Glyma19g03131.1   sequence type=CDS   gene model=Glyma19g03131   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACTGAGGTCCTTAAAGCTCTACAAGAATTAAATGTTTGTTGGAAGAAGATTGGACACTATAACATGAAGTGCAGATGGGTTGCTGGCACTGCTGGTCATCATGAAGGAATGATTAACAATTCTGTGCATAGTAATCATTACTTTGGGAATGATTCGTGCATTATTGAAAATGAAGCTGTTTCTAAGTCAAATGTGGTCAAGTTTGAAGTGCAGCTTTACAAAACTCGTGAGGAGAAATACCTACTTGATCTTCAAAGGGTCCAGGGCCCACAGTTTCTTTTCTTGGATCTTTAG
Predicted protein sequences of Glyma19g03131
>Glyma19g03131.1   sequence type=predicted peptide   gene model=Glyma19g03131   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTEVLKALQELNVCWKKIGHYNMKCRWVAGTAGHHEGMINNSVHSNHYFGNDSCIIENEAVSKSNVVKFEVQLYKTREEKYLLDLQRVQGPQFLFLDL*






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