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Report for Sequence Feature Glyma19g03060

Feature Type:gene_model
Chromosome:Gm19
Start:3179521
stop:3181250
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma19g03060
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G39530AT Annotation by Michelle Graham. TAIR10: Protein of unknown function (DUF1997) | chr5:15826285-15827517 REVERSE LENGTH=239 SoyBaseE_val: 4.00E-53ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
PF09366PFAM Protein of unknown function (DUF1997) JGI ISS
UniRef100_C6T014UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6T014_SOYBN SoyBaseE_val: 1.00E-173ISS
UniRef100_Q10R85UniRef Annotation by Michelle Graham. Most informative UniRef hit: Expressed protein n=2 Tax=Oryza sativa Japonica Group RepID=Q10R85_ORYSJ SoyBaseE_val: 6.00E-35ISS

Expression Patterns of Glyma19g03060
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g03060
ParalogEvidenceComments
Glyma13g05660 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g03060 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.19g025600 Wm82.a2.v1IGC As supplied by JGI

References for Glyma19g03060
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma19g03060
>Glyma19g03060.1   sequence type=CDS   gene model=Glyma19g03060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAAGCTTTCTCATGGTTCCTTGCCAGCATCTATTGCTAAAGAAGTTGCAAAAGCATTGCCATAGAAAGACAGCATCAACCTCCATCAGGAGTGAGAAAACTTCCTCATTCCGTTTCAGAAGCAATGCCAATGTTCCTCTTCATGAATTGCCAGGGGCTTCCTTTGATCAATACATGGATGACAAGCACAGAGTACTAAGAGCTGTTTTTTCTGATGACAAAGGAACAACTAAACAGCTCAATGAGGAAGAGTGGAGGATCAAAATGCCTCCCATGCAATGCTTATTTTTGAGTGTCAATCCAACAGCAGATGTCAAGTTAACATTCAAGTCTAATGGAGAAGATTATCCACCTGAAATTCCTCATCATGTCCCCAAAGTTCTTGAGCTTCACTTTATAAGGTGGGAGTTACAGGGCCTGGATACCTTCTACAAGGATCATTACCAAATCAACATAGATGTTAGAGGCTCTTTATACCCAGAAAGGAAGGGAAAACATAGTTGGCTAAAGAATCAAATGGTGATGAAGATAACCTTTTGTCCAAAAGTAGCTTTCATTCCTGAAAATCTCTTACAAGATGCCATAGAGCTGATTTTCAAAGCAGTGTGGGATCAAACGAAGCATGAATTCCATGATAGACTATTGGAAGATTATAACAGGTTCAAGAGAAACAAATCAGGGAAGAACTATGTCTAA
Predicted protein sequences of Glyma19g03060
>Glyma19g03060.1   sequence type=predicted peptide   gene model=Glyma19g03060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASFLMVPCQHLLLKKLQKHCHRKTASTSIRSEKTSSFRFRSNANVPLHELPGASFDQYMDDKHRVLRAVFSDDKGTTKQLNEEEWRIKMPPMQCLFLSVNPTADVKLTFKSNGEDYPPEIPHHVPKVLELHFIRWELQGLDTFYKDHYQINIDVRGSLYPERKGKHSWLKNQMVMKITFCPKVAFIPENLLQDAIELIFKAVWDQTKHEFHDRLLEDYNRFKRNKSGKNYV*






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