Glyma19g03050 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma19g03050

Feature Type:	gene_model
Chromosome:	Gm19
Start:	3166011
stop:	3175063
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g03050

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G29090	AT	Annotation by Michelle Graham. TAIR10: pectin methylesterase 31 \| chr3:11073804-11075335 FORWARD LENGTH=317	SoyBase	E_val: 9.00E-156	ISS
GO:0042545	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell wall modification	SoyBase	N/A	ISS
GO:0045488	GO-bp	Annotation by Michelle Graham. GO Biological Process: pectin metabolic process	SoyBase	N/A	ISS
GO:0005618	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cell wall	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0009505	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plant-type cell wall	SoyBase	N/A	ISS
GO:0030599	GO-mf	Annotation by Michelle Graham. GO Molecular Function: pectinesterase activity	SoyBase	N/A	ISS
PTHR22931	Panther	PHOSPHOENOLPYRUVATE DIKINASE-RELATED	JGI		ISS
PTHR22931:SF5	Panther	METHYLESTERASE INHIBITOR-RELATED	JGI		ISS
PF01095	PFAM	Pectinesterase	JGI		ISS
UniRef100_I1LWM4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Pectinesterase n=1 Tax=Glycine max RepID=I1LWM4_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_UPI000233E770	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233E770 related cluster n=1 Tax=unknown RepID=UPI000233E770	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma19g03050

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g03050

Paralog	Evidence	Comments
Glyma13g05650	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g03050 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g025500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g03050

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma19g03050

Limit To All Plant Sequences

>Glyma19g03050.2   sequence type=CDS   gene model=Glyma19g03050   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAGCTTTTGTAATAACTGTGTCACAAGATGGAACCGAACAGTGCCGAACGGTGCAGGAAGCCATAGATGCTGTGCCACTCGGCAACACTCGCCGGACGGTGATTCTGACTAAGAACTTCATCACCCTCATTGGCCTGCGCCCTGAGGACACTCTTCTCACTTGGAACAACACTGCCACCTTAATCCACCACCACCAGGATGCTAAGGTGATAGGGACTGGAATCTTTGGTTGTGGCACCATCATTGTGGAAGGGGGGGACTTTATTGCTGAGAATATTACCTTTGAGAATTCTTCCCCTCAGGGTGCAGGGCAAGCAGTAGCAGTTAGAGTAACAGCAGATCGTTGTGCTTTCTACAATTGCAGGTTCCTTGGATGGCAGGACACGTTGTATTTACATTATGGAAAACAATATTTGAAAGATTGTTACATTGAAGGAAGTGTGGACTTCATTTTTGGTAATAGCACTGCACTCTTGGAACATTGTCACATCCACTGCAAGACTGCACAGAGCAGAAACTCTCCACAGGAAAAAACTGGTTATGTATTCCTCAGATATGTTGTCACAGGTAATGGGGGAACTTCATATGCATATCTGGGAAGACCATGGAGACCTTTTGCAAGAGTGGTGTTTGCATTCACTTACATGGATCAATGTATAAAACCTGCTGGCTGGAATAATTGGGGGAAAATTGAGAAAGAAAAAACTGTTAGCTTCTATGAATACAGGTGTTTTGGACCGGGTTTCTCTCCATCCCAACGAGTAAAATGGGCTAGAGAATTACAAGCTGAAGCAGATGAGCATTTTCTCATGCATAGCTTCATTGACCCAGAATCAGAGAGACCTTGGCTTGCTCAAAGAATGGTTTTGAATATTCCATATTCTGCTTAG

Predicted protein sequences of Glyma19g03050

Limit To All Plant Sequences

>Glyma19g03050.2   sequence type=predicted peptide   gene model=Glyma19g03050   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAAFVITVSQDGTEQCRTVQEAIDAVPLGNTRRTVILTKNFITLIGLRPEDTLLTWNNTATLIHHHQDAKVIGTGIFGCGTIIVEGGDFIAENITFENSSPQGAGQAVAVRVTADRCAFYNCRFLGWQDTLYLHYGKQYLKDCYIEGSVDFIFGNSTALLEHCHIHCKTAQSRNSPQEKTGYVFLRYVVTGNGGTSYAYLGRPWRPFARVVFAFTYMDQCIKPAGWNNWGKIEKEKTVSFYEYRCFGPGFSPSQRVKWARELQAEADEHFLMHSFIDPESERPWLAQRMVLNIPYSA*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain