Glyma19g03040 - SoyBase

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Report for Sequence Feature Glyma19g03040

Feature Type:	gene_model
Chromosome:	Gm19
Start:	3155085
stop:	3157909
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g03040

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G39570	AT	Annotation by Michelle Graham. TAIR10: FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cytosol, nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: glycine-rich protein (TAIR:AT3G29075.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). \| chr5:15844021-15845827 FORWARD LENGTH=3	SoyBase	E_val: 4.00E-52	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
UniRef100_I1N675	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N675_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q9LJV8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Gb\|AAF16629.1 n=2 Tax=Arabidopsis thaliana RepID=Q9LJV8_ARATH	SoyBase	E_val: 2.00E-31	ISS

Expression Patterns of Glyma19g03040

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g03040

Paralog	Evidence	Comments
Glyma13g05630	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g03040 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g025400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g03040

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma19g03040

Limit To All Plant Sequences

>Glyma19g03040.1   sequence type=CDS   gene model=Glyma19g03040   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCGTATTTTTCAAGGGGACGTCGCGACGACGACGACACGGTGGACGACTACGACGAGTACGACCCCACCCCATACGGCGGCGGCTACGACATTCACCTCACCTACGGCCGCCCCGTCTCTCCTTCAGAAGAAACCTGCTACCCACTCGGAGCCTCTTCCGATGAAAACTTCGATTACGATCGCCCCCAGTACACCTCTTACGCTGAACCCTCTGCTTATGGCGATGAAGCCCTGGCCACTGAGTATAGCAGTTACTCTCGCCCTAAGCCCAGGCCCGCTCCTGCAGGCTTCAATCCCGCCGCCGGATCCGGGTATGGTAGGAAGCAGGAGTCGGAATACGGATCCGGGTATGGAAGGAAGGAAGAAGGAGAATACGGGTCAGGATATGGTGGAAGAAAGGAGGAATCAGAATACGGATCCGGGTATGGAAGGAAGGAAGAAGGTGAATATGGGTCCGGGTATGGTGGGAGAAAGGAGGATTCTGAATATGGATCCGGGTATGGTAGAAAACAAGAAGATGAATTTGGGTCCGGGTATGGTGGAAGGAAGGAGGAGTCTGAATATGGATCTGGGTATGGTGGGAGAAAGCAAGAATCTGAATATGGATCCGGGTATGGTGGAAGGAAGGAAGAGTCTGAATATGGGTCAGGATATGGAGGAAGGAAGGAGGAATCAGAATATGGATCAGGGTATGATGGGAGAAAGGAGGAGAGTGAATATGGATCCGGGTATGGTGGAAGGAAGCAAGAATCTGAATATGGATCCGGGTATGGTGGAAGGAAGCAAGAATCTGAATATGGATCCGGGTATGGAGGGAGGAGTGAGTATGAGGAGAAACCGAGCTATGGGAGGAGCAACTATGAAAGCCAGGGAGGAGGAGGAGGGGTTGAGTATGGTTATGAGGGGCGTCCACCTCGGCAGGAGGAGGAGGAGGAGGAGGGGTACCGCAAGCCCTCCTATCAGAGGAAGGATGATGATGATGAGGAAGGCTATGGACGCAAGAAATATGGAGATGACTCAGATGATGATGATGGGAGGAAGAAGCATCACCACAAGCATCACCAGTACAAGAGTTATGATGATGAGTAA

Predicted protein sequences of Glyma19g03040

Limit To All Plant Sequences

>Glyma19g03040.1   sequence type=predicted peptide   gene model=Glyma19g03040   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSYFSRGRRDDDDTVDDYDEYDPTPYGGGYDIHLTYGRPVSPSEETCYPLGASSDENFDYDRPQYTSYAEPSAYGDEALATEYSSYSRPKPRPAPAGFNPAAGSGYGRKQESEYGSGYGRKEEGEYGSGYGGRKEESEYGSGYGRKEEGEYGSGYGGRKEDSEYGSGYGRKQEDEFGSGYGGRKEESEYGSGYGGRKQESEYGSGYGGRKEESEYGSGYGGRKEESEYGSGYDGRKEESEYGSGYGGRKQESEYGSGYGGRKQESEYGSGYGGRSEYEEKPSYGRSNYESQGGGGGVEYGYEGRPPRQEEEEEEGYRKPSYQRKDDDDEEGYGRKKYGDDSDDDDGRKKHHHKHHQYKSYDDE*

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