Glyma19g03020 - SoyBase

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Report for Sequence Feature Glyma19g03020

Feature Type:	gene_model
Chromosome:	Gm19
Start:	3149604
stop:	3153704
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g03020

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G26690	AT	Annotation by Michelle Graham. TAIR10: emp24/gp25L/p24 family/GOLD family protein \| chr1:9224299-9225682 REVERSE LENGTH=214	SoyBase	E_val: 3.00E-91	ISS
GO:0006810	GO-bp	Annotation by Michelle Graham. GO Biological Process: transport	SoyBase	N/A	ISS
GO:0006886	GO-bp	Annotation by Michelle Graham. GO Biological Process: intracellular protein transport	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0016021	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane	SoyBase	N/A	ISS
GO:0008320	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein transmembrane transporter activity	SoyBase	N/A	ISS
KOG1691	KOG	emp24/gp25L/p24 family of membrane trafficking proteins	JGI		ISS
PTHR22811	Panther	COPII-COATED VESICLE MEMBRANE PROTEIN	JGI		ISS
PTHR22811:SF5	Panther	EMP24/GP25L-RELATED	JGI		ISS
PF01105	PFAM	emp24/gp25L/p24 family/GOLD	JGI		ISS
UniRef100_G7KKY5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Transmembrane emp24 domain-containing protein n=1 Tax=Medicago truncatula RepID=G7KKY5_MEDTR	SoyBase	E_val: 9.00E-119	ISS
UniRef100_I1N673	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1N673_SOYBN	SoyBase	E_val: 5.00E-160	ISS

Expression Patterns of Glyma19g03020

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g03020

Paralog	Evidence	Comments
Glyma13g05610	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g03020 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g025300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g03020

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma19g03020

Limit To All Plant Sequences

>Glyma19g03020.2   sequence type=transcript   gene model=Glyma19g03020   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTAATCCCAGGGAATACCATGGAACTGTTAGTATCACTATAACAAAACCAAAATCCCGGTGGTTACTTTTCGCATCTTTTCGTTTTGAGCTCACCGTGGCTCTTCTCCATTGTCGTTTTGCTTCTCCCTTCTTCCTTCCCATTCAAACCCTAATCTGTCCCTCGGATCCCAAAATTGCCCCAAATTGAGAACACGCCATGGCGGCAACGTTCGATTTGGTTCGTTCCCTCGCACTTCTCACTCTTGCATTTGTGTGTAGCGTCGCGAATTCGATGCGGTTCGAGCTTCAATCGGGTAACACCAAGTGCATTTCAGAAGACATTAAGACCAACGCGATGAGTGTGGGAAAGTACAGTGTTGTTAATCCCCGAGAAGGGTACCCACTTCCCGATTCCCACAGGATCGTTGTCAAGGTGACGTCGCCTCATGCGAACATGTATCACTTTGGAGATCATGTGGATTCTGGTAATTTTGCATTTACGGCATCTGAGTCTGGTGACTACTCAGCTTGCTTTTGGGTTCAGGATACCAGAGATACCCCGTCGGTGGTGACTATTGAATTTGAGTGGAGAACTGGGGTTGCTGCCAAAGACTGGTCCAAGGTTGCCAAGAAAGGGCAGATTGAAGTAATGGAATTTGAGTTGAAGAAGCTATATGATACTATCCTATCCATCCATGACGAGATGTTTTATCTTCGAGAAAGATAAAAGGAATATATAGCTGTTGGGTCAGAAGAAATTGGAATCTTTTGCTGGGAGGGATCTCTCTCTAGGGAGGAAGAGATGCAAGATCTTAACAAAGCAACAAACAGCAAGATGTTTACCTTCAGTTTCCTTTCGATTGTGGTTTGCTTGTCTGTGGCTGGTTTGCAACTATGGCATTTGAAGACATTCTTTGAGAGGAAGAAGCTCCTCTAAGTTCATCACACGAATTTTGTTCATTTTTGCTTCAGAATTTTTTTTATTTTCTGTTCCTGGTTGTTCCTTATGTATCCAAATGTATGATTAGTTCATCTTTCACTTTTACATTTTATGGCAACTAGAAATTGCTGCTGATCGCAAGTCATGTTAAATGTATGTTACAATTATGAACCGGTATTAACTTTAGAAACTATAGTTAAATTTCTTAACAGGCCCTTAAATTTGTGATTTGAAAGTTATCTTTTTTCATTCTGAGCACTGAATGTTAATGCTTGATGATAAAAGCCCATAAATCTCCTTCAAAATACAAATGGTCAAAATTGGCATTGTTGTGTTT

Coding sequences of Glyma19g03020

Limit To All Plant Sequences

>Glyma19g03020.1   sequence type=CDS   gene model=Glyma19g03020   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGGCAACGTTCGATTTGGTTCGTTCCCTCGCACTTCTCACTCTTGCATTTGTGTGTAGCGTCGCGAATTCGATGCGGTTCGAGCTTCAATCGGGTAACACCAAGTGCATTTCAGAAGACATTAAGACCAACGCGATGAGTGTGGGAAAGTACAGTGTTGTTAATCCCCGAGAAGGGTACCCACTTCCCGATTCCCACAGGATCGTTGTCAAGGTGACGTCGCCTCATGCGAACATGTATCACTTTGGAGATCATGTGGATTCTGGTAATTTTGCATTTACGGCATCTGAGTCTGGTGACTACTCAGCTTGCTTTTGGGTTCAGGATACCAGAGATACCCCGTCGGTGGTGACTATTGAATTTGAGTGGAGAACTGGGGTTGCTGCCAAAGACTGGTCCAAGGTTGCCAAGAAAGGGCAGATTGAAGTAATGGAATTTGAGTTGAAGAAGCTATATGATACTATCCTATCCATCCATGACGAGATGTTTTATCTTCGAGAAAGGGAGGAAGAGATGCAAGATCTTAACAAAGCAACAAACAGCAAGATGTTTACCTTCAGTTTCCTTTCGATTGTGGTTTGCTTGTCTGTGGCTGGTTTGCAACTATGGCATTTGAAGACATTCTTTGAGAGGAAGAAGCTCCTCTAA

>Glyma19g03020.2   sequence type=CDS   gene model=Glyma19g03020   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGGCAACGTTCGATTTGGTTCGTTCCCTCGCACTTCTCACTCTTGCATTTGTGTGTAGCGTCGCGAATTCGATGCGGTTCGAGCTTCAATCGGGTAACACCAAGTGCATTTCAGAAGACATTAAGACCAACGCGATGAGTGTGGGAAAGTACAGTGTTGTTAATCCCCGAGAAGGGTACCCACTTCCCGATTCCCACAGGATCGTTGTCAAGGTGACGTCGCCTCATGCGAACATGTATCACTTTGGAGATCATGTGGATTCTGGTAATTTTGCATTTACGGCATCTGAGTCTGGTGACTACTCAGCTTGCTTTTGGGTTCAGGATACCAGAGATACCCCGTCGGTGGTGACTATTGAATTTGAGTGGAGAACTGGGGTTGCTGCCAAAGACTGGTCCAAGGTTGCCAAGAAAGGGCAGATTGAAGTAATGGAATTTGAGTTGAAGAAGCTATATGATACTATCCTATCCATCCATGACGAGATGTTTTATCTTCGAGAAAGATAA

Predicted protein sequences of Glyma19g03020

Limit To All Plant Sequences

>Glyma19g03020.1   sequence type=predicted peptide   gene model=Glyma19g03020   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAATFDLVRSLALLTLAFVCSVANSMRFELQSGNTKCISEDIKTNAMSVGKYSVVNPREGYPLPDSHRIVVKVTSPHANMYHFGDHVDSGNFAFTASESGDYSACFWVQDTRDTPSVVTIEFEWRTGVAAKDWSKVAKKGQIEVMEFELKKLYDTILSIHDEMFYLREREEEMQDLNKATNSKMFTFSFLSIVVCLSVAGLQLWHLKTFFERKKLL*

>Glyma19g03020.2   sequence type=predicted peptide   gene model=Glyma19g03020   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAATFDLVRSLALLTLAFVCSVANSMRFELQSGNTKCISEDIKTNAMSVGKYSVVNPREGYPLPDSHRIVVKVTSPHANMYHFGDHVDSGNFAFTASESGDYSACFWVQDTRDTPSVVTIEFEWRTGVAAKDWSKVAKKGQIEVMEFELKKLYDTILSIHDEMFYLRER*

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