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Report for Sequence Feature Glyma19g03000

Feature Type:gene_model
Chromosome:Gm19
Start:3105011
stop:3107033
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G05680AT Annotation by Michelle Graham. TAIR10: Uridine diphosphate glycosyltransferase 74E2 | chr1:1703196-1704639 REVERSE LENGTH=453 SoyBaseE_val: 1.00E-132ISS
GO:0008152GO-bp Annotation by Michelle Graham. GO Biological Process: metabolic process SoyBaseN/AISS
GO:0009407GO-bp Annotation by Michelle Graham. GO Biological Process: toxin catabolic process SoyBaseN/AISS
GO:0010016GO-bp Annotation by Michelle Graham. GO Biological Process: shoot morphogenesis SoyBaseN/AISS
GO:0010583GO-bp Annotation by Michelle Graham. GO Biological Process: response to cyclopentenone SoyBaseN/AISS
GO:0042631GO-bp Annotation by Michelle Graham. GO Biological Process: cellular response to water deprivation SoyBaseN/AISS
GO:0070301GO-bp Annotation by Michelle Graham. GO Biological Process: cellular response to hydrogen peroxide SoyBaseN/AISS
GO:0071215GO-bp Annotation by Michelle Graham. GO Biological Process: cellular response to abscisic acid stimulus SoyBaseN/AISS
GO:0071475GO-bp Annotation by Michelle Graham. GO Biological Process: cellular hyperosmotic salinity response SoyBaseN/AISS
GO:0080024GO-bp Annotation by Michelle Graham. GO Biological Process: indolebutyric acid metabolic process SoyBaseN/AISS
GO:0080167GO-bp Annotation by Michelle Graham. GO Biological Process: response to karrikin SoyBaseN/AISS
GO:0005575GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cellular component SoyBaseN/AISS
GO:0008194GO-mf Annotation by Michelle Graham. GO Molecular Function: UDP-glycosyltransferase activity SoyBaseN/AISS
GO:0016757GO-mf Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring glycosyl groups SoyBaseN/AISS
GO:0016758GO-mf Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring hexosyl groups SoyBaseN/AISS
GO:0035251GO-mf Annotation by Michelle Graham. GO Molecular Function: UDP-glucosyltransferase activity SoyBaseN/AISS
GO:0052638GO-mf Annotation by Michelle Graham. GO Molecular Function: indole-3-butyrate beta-glucosyltransferase activity SoyBaseN/AISS
KOG1192 KOG UDP-glucuronosyl and UDP-glucosyl transferase JGI ISS
PTHR11926Panther GLUCOSYL/GLUCURONOSYL TRANSFERASES JGI ISS
PTHR11926:SF15Panther UDP-GLUCURONOSYLTRANSFERASE RELATED JGI ISS
PF00201PFAM UDP-glucoronosyl and UDP-glucosyl transferase JGI ISS
UniRef100_G7KSI0UniRef Annotation by Michelle Graham. Most informative UniRef hit: UDP-glucose glucosyltransferase n=1 Tax=Medicago truncatula RepID=G7KSI0_MEDTR SoyBaseE_val: 0ISS
UniRef100_I1N671UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N671_SOYBN SoyBaseE_val: 0ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma19g03000 not represented in the dataset

Glyma19g03000 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma13g05580 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.19g025100 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma19g03000.2   sequence type=CDS   gene model=Glyma19g03000   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGAAGAAAAGCATAACAAGCAGAGCACATTGTTTAGTGCTAGCATTTCCAGGTCAAGGCCATATCAATCCCATGCTTCAATTCTCCAAGCTATTGGAGCGTCAAGGGGTGAGAATAACACTTGTTACTACTCGTTTCTATTCCAAGAATTTGCAAAACGTGCCTCCTTCCATTGCTCTTGAAACCATTTCTGATGGGTTTGATGAAGTTGGGCCCCAAGAGGCTGGGAGCCCCAAGGCCTATATAGATCGCTTGTGCCAAGTTGGATCAGAAACCTTTCATGAGCTTCTTGAGAAACTTGGCAAATCAAGAAACCATGTTGATTGTGTTATTTATGATTCATTCTTCCCTTGGGCACTAGATGTTACCAAGAGATTTGGGATACTTGGAGCTTCTTATCTCACTCAAAATATGACCGTCAATAATATATACTATCATGTTCACTTGGGAACGTTGCAAGCTCCACTCAAAGAGCATGAGATTTCCCTTCCCAAGTTGCCTAAACTTCAACACGAGGACATGCCTTCTTTTTTCTTCACATATGAAGAAGATCCATCTATGCTTGATTTTTTTGTGGTTCAGTTCTCCAATATCGACAAAGCTGATTGGATCCTATGCAATACATACTATGAGCTGGACAAAGAGATTGTAGATTGGATCATGGAGATTTGGCCAAAATTTAGGTCCATAGGACCAAACATACCATCTTTATTCTTAGATAAGCGATATGAAAATGACCAAGATTATGGGGTCACAGAATTCAAGAGGGATGAATGCATCGAATGGCTAGATGATAAGCCAAAAGGGTCTGTTGTTTATGTATCGTTCGGGAGTATAGCTACCTTTGGTGACGAGCAAATGGAAGAGCTAGCTTGTTGTTTGAAAGAGTCCTTGGGCTACTTTTTGTGGGTGGTTAGAGCCTCTGAAGAGACTAAACTTCCTAAAGGTTTTGAGAAAAAAACAAAGAAAGGCTTGGTAGTGACATGGTGCTCCCAACTAAAAGTTCTTGCTCATGAGGCTATAGGATGCTTTGTGACACATTGTGGTTGGAATTCCACTTTAGAAACTTTATGCTTAGGAGTCCCGATAATTGCAATACCATTTTGGTCAGATCAAAGCACAAATGCAAAGCTTATGGCGGATGTTTGGAAGATCGGAATTAGAGCTCCTATTGACGACAACAAGGTTGTGCGTCGAGAAGCACTAAAGCACTGCATAAGGGAAATAATGGAGAATGAAAAAGGCAAAGAGATGAAAAGTAATGCCATTCGATGGAAGACCTTGGCTGTAAAAGCTGTTAGTGATGATGGTAGTTCTCATAAAAATATTCTAGAATTTACAAATAACTTGTTTCATCCATAA

>Glyma19g03000.2   sequence type=predicted peptide   gene model=Glyma19g03000   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEKKSITSRAHCLVLAFPGQGHINPMLQFSKLLERQGVRITLVTTRFYSKNLQNVPPSIALETISDGFDEVGPQEAGSPKAYIDRLCQVGSETFHELLEKLGKSRNHVDCVIYDSFFPWALDVTKRFGILGASYLTQNMTVNNIYYHVHLGTLQAPLKEHEISLPKLPKLQHEDMPSFFFTYEEDPSMLDFFVVQFSNIDKADWILCNTYYELDKEIVDWIMEIWPKFRSIGPNIPSLFLDKRYENDQDYGVTEFKRDECIEWLDDKPKGSVVYVSFGSIATFGDEQMEELACCLKESLGYFLWVVRASEETKLPKGFEKKTKKGLVVTWCSQLKVLAHEAIGCFVTHCGWNSTLETLCLGVPIIAIPFWSDQSTNAKLMADVWKIGIRAPIDDNKVVRREALKHCIREIMENEKGKEMKSNAIRWKTLAVKAVSDDGSSHKNILEFTNNLFHP*







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