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Report for Sequence Feature Glyma19g02980

Feature Type:gene_model
Chromosome:Gm19
Start:3087303
stop:3090052
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G66370AT Annotation by Michelle Graham. TAIR10: myb domain protein 113 | chr1:24753634-24754604 FORWARD LENGTH=246 SoyBaseE_val: 1.00E-52ISS
GO:0006355GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0009753GO-bp Annotation by Michelle Graham. GO Biological Process: response to jasmonic acid stimulus SoyBaseN/AISS
GO:0031540GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of anthocyanin biosynthetic process SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003677GO-mf Annotation by Michelle Graham. GO Molecular Function: DNA binding SoyBaseN/AISS
GO:0003700GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity SoyBaseN/AISS
KOG0048 KOG Transcription factor, Myb superfamily JGI ISS
PTHR10641Panther MYB-RELATED JGI ISS
PF00249PFAM Myb-like DNA-binding domain JGI ISS
UniRef100_A4GRU7UniRef Annotation by Michelle Graham. Most informative UniRef hit: Anthocyanin 2 n=1 Tax=Petunia integrifolia RepID=A4GRU7_PETIN SoyBaseE_val: 2.00E-63ISS
UniRef100_C6SYQ1UniRef Annotation by Michelle Graham. Best UniRef hit: Putative uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=C6SYQ1_SOYBN SoyBaseE_val: 3.00E-143ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma19g02980 not represented in the dataset

Glyma19g02980 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Corresponding NameAnnotation VersionEvidenceComments
Glyma.19g025000 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma19g02980.2   sequence type=CDS   gene model=Glyma19g02980   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATGGATCCGCATGTGTGAGAAAAGGCTTATGGAGTGAAGTGGAAGATACCCTTCTCAGGACCTGTGTGCGACAATATGGTGAAGGACAATGGCACTTAGTCCCTACAAGAGCAGGCTTGAACAGGTGCCGCAAGAGCTGCAGATTGCGGTGGTTGAATTATCTAAAGCCAAATATCAAGAGGGGAGAGTTCACTGAGGACGAAGTTGATTTGATGCAAAGATTGCATAATCTTTTGGGAAACAGATGGTCCTTGATTGCTGGAAGACTTCCAGGAAGAACTCCAAATGATGTGAAAAACTACTGGAACACCTACATTCGAAGGAAGGTATCATCATCTCACAAGGTGGTGATCAATGAAAAGCAAAAGAAAACAACAGTGAAGCCTCATGTGGTGATAAAGCCTAAGGCTCGAACTTTCTCAAGACCTTCACCCTCCGGGTTGAGAGGGAGTAGTGTTCTTAGAGAAGAAGGTGGTGAGAGTGGGGCCAAACACTGCTCAACTCATCATCAAGCATGTGCAGCTTCATCAGAGTACATTAATAATTGGAGTACTGATCAGTGGTGGAAAACTATGATGCACGACAAGGGGGACAACTTAGACAACAACCAATGCTTGTTGGGCTACCAGGATGAGGTTGGGAAGCTCGTGAAAGACAATAATTGTGATGAGAATCTTGCTTCCTTGACAACACAAGAAGGAGAGTTTCTTATAGAAGGGCAAAATTGGAGTGATTTTTTTCTTGATACAAATTTGTGA

>Glyma19g02980.2   sequence type=predicted peptide   gene model=Glyma19g02980   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDGSACVRKGLWSEVEDTLLRTCVRQYGEGQWHLVPTRAGLNRCRKSCRLRWLNYLKPNIKRGEFTEDEVDLMQRLHNLLGNRWSLIAGRLPGRTPNDVKNYWNTYIRRKVSSSHKVVINEKQKKTTVKPHVVIKPKARTFSRPSPSGLRGSSVLREEGGESGAKHCSTHHQACAASSEYINNWSTDQWWKTMMHDKGDNLDNNQCLLGYQDEVGKLVKDNNCDENLASLTTQEGEFLIEGQNWSDFFLDTNL*







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