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Report for Sequence Feature Glyma19g02940

Feature Type:gene_model
Chromosome:Gm19
Start:3049370
stop:3050629
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G44190AT Annotation by Michelle Graham. TAIR10: FAD/NAD(P)-binding oxidoreductase family protein | chr3:15902004-15903402 REVERSE LENGTH=367 SoyBaseE_val: 7.00E-74ISS
GO:0009407GO-bp Annotation by Michelle Graham. GO Biological Process: toxin catabolic process SoyBaseN/AISS
GO:0010200GO-bp Annotation by Michelle Graham. GO Biological Process: response to chitin SoyBaseN/AISS
GO:0010583GO-bp Annotation by Michelle Graham. GO Biological Process: response to cyclopentenone SoyBaseN/AISS
GO:0042744GO-bp Annotation by Michelle Graham. GO Biological Process: hydrogen peroxide catabolic process SoyBaseN/AISS
GO:0046482GO-bp Annotation by Michelle Graham. GO Biological Process: para-aminobenzoic acid metabolic process SoyBaseN/AISS
GO:0055114GO-bp Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0005794GO-cc Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus SoyBaseN/AISS
GO:0009055GO-mf Annotation by Michelle Graham. GO Molecular Function: electron carrier activity SoyBaseN/AISS
GO:0016491GO-mf Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity SoyBaseN/AISS
GO:0050660GO-mf Annotation by Michelle Graham. GO Molecular Function: flavin adenine dinucleotide binding SoyBaseN/AISS
PTHR22915Panther NADH DEHYDROGENASE-RELATED JGI ISS
PTHR22915:SF5Panther APOPTOSIS-INDUCING FACTOR (AIF)-LIKE MITCHONDRION-ASSOCIATED INDUCER OF DEATH (P53-RESPONSIVE GENE 3) (AMID PROTEIN) JGI ISS
PF07992PFAM Pyridine nucleotide-disulphide oxidoreductase JGI ISS
UniRef100_B9SD10UniRef Annotation by Michelle Graham. Most informative UniRef hit: Apoptosis-inducing factor, putative n=1 Tax=Ricinus communis RepID=B9SD10_RICCO SoyBaseE_val: 5.00E-71ISS
UniRef100_I1LKM6UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LKM6_SOYBN SoyBaseE_val: 1.00E-103ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma19g02940 not represented in the dataset

Glyma19g02940 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Corresponding NameAnnotation VersionEvidenceComments
Glyma.19g024900 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma19g02940.1   sequence type=CDS   gene model=Glyma19g02940   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATAAAATTTGATCAGTCCATTCTGATTATTGGAGGAGGTCCCACTGGTGTGGAACTTGCTGGAGCAAGGCTTACACTAGTGCACAAAGGAGCAAGGCTTCTGGAATTCGTAGGGGCAAAAGCCGAGGATAAGACTCTAAATTGGTTGAAATCAAAGAATGTTGTGGTCAAACTAGAGCAATCAAAGATATATCAAACTTCAAATGGAGGGACCATTGAGGCAGATTGTCATTTCTTATGTATAGGGAAACCACTTGCTTCAGCATGGCTTAAGGAAACTGTGTTGAAGAATGACTTGGATGGTCAAGGTAGGATCAAGGTAGATGAAAGATTGAGGGTCAAGGGCCGGAACAACATTTTTGCAATTGGAGATGTTACAGACATTCCGGAAATCAAGCAAGGGTTTTTGGCACAACAACAGCTTGAAGTGGTTGTGAAGAACTTAAATTTACCATTCTTGACAATAAGTGGAAGAATTCCAGGATTCATCAAGTCTAGAGATTTGTTTGTTGGTAAAACAAGAAAACAAATGGGACTCAATCCTGTACACATTTGA

>Glyma19g02940.1   sequence type=predicted peptide   gene model=Glyma19g02940   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
IKFDQSILIIGGGPTGVELAGARLTLVHKGARLLEFVGAKAEDKTLNWLKSKNVVVKLEQSKIYQTSNGGTIEADCHFLCIGKPLASAWLKETVLKNDLDGQGRIKVDERLRVKGRNNIFAIGDVTDIPEIKQGFLAQQQLEVVVKNLNLPFLTISGRIPGFIKSRDLFVGKTRKQMGLNPVHI*







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