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Integrating Genetics and Genomics to Advance Soybean Research




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Report for Sequence Feature Glyma19g02900

Feature Type:gene_model
Chromosome:Gm19
Start:2984334
stop:2986915
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G20970AT Annotation by Michelle Graham. TAIR10: FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: guard cell, cultured cell; BEST Arabidopsis thaliana protein match is: proton pump interactor 1 (TAIR:AT4G27500.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr1:7314338-7319246 FORWARD LENGTH=1364 SoyBaseE_val: 1.00E-37ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005773GO-cc Annotation by Michelle Graham. GO Cellular Compartment: vacuole SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
UniRef100_Q9SYP0UniRef Annotation by Michelle Graham. Most informative UniRef hit: F9H16.4 protein n=1 Tax=Arabidopsis thaliana RepID=Q9SYP0_ARATH SoyBaseE_val: 9.00E-35ISS
UniRef100_UPI000233D962UniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233D962 related cluster n=1 Tax=unknown RepID=UPI000233D962 SoyBaseE_val: 6.00E-167ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma19g02900 not represented in the dataset

Glyma19g02900 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Corresponding NameAnnotation VersionEvidenceComments

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma19g02900.1   sequence type=CDS   gene model=Glyma19g02900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GCGTCCCGCTTAACGGAAGTTGCAGACCAATCAGAGCTGCAGAACTTGCTAAGCGCGTACCTTCGCGCTAAGCCCAAATCCTTCTCGGCCAACCCTATCCCGCTAAGTGTGTTCGAGAGTGAAGCTAAGACTTCAAGTGGTGCAGTGGAGACTGAAGTTAAACCTTCACATGGTGTAGTTGAGAGTGAAGCTAAACCTTCAAATGGTGTAGCTGATACTGAAAGTGAACCTTCTGTTGATAGTGAAAGAGAGGCTTGTGTTGTGTCTGAGATGAAAAACAATGCAGTGAAGAGTGAAGCTCAACCTTCCGTTGATGTGAATCATAAGAAAACTAACGCAGTTGATAGTGAAGCTGAACTTTCAGTCAAAGGTGGGCTTTCTGTTGAAAGTGAAGGTAGTAATCAAGGAGATGAAGATTCAAGACCTGCCTCAGATGCTTTGGATGGACAAAATGTGGGTACAGACGTAGTGAAAAACCCATTCTACTATTTGATCAGGGTTCCCAGATATGATGATGATGAAAATATAAAAGAGAACATAAAAAATGCTCTTCTCCAAGTAGAGGAAAAGACTAAAATTAGATATGCTATTCGAATCAAAAGGCAGACTATAAAGGAAATAGATTCAGTTCAATCCATAATGAACAGATTAAACAATGCAATTTCTGTTGGGGATATAGATGGCAAGATAAGAAGCATGGAACACATGATCGAGCATGAAACTTTGCCTCTAAATAAAGAAAAGCAATTGATACGCGAGATCAAACAATTGAAACAAAATCGTGATGAGTTGACTTGTAATATGAAAAAGCAGGATCAATCACAACAATCTATAGACAACAAGGATGACAATATTGAAGAGCACTTTAAGCATTTACAGCTTTTGAAGAAGGAAATGGAAGTGCTTAGAAATAATGTTCTGAAGTCAGATACAAAAACTAAAGCCGCAAAGAAGAAATATAATGATGAATATGATAAATTGAATAAATACAGGAGAATTAGGAGTCCAAACAGATTCTTACCTGCAGTAATGATAATAGCCACACCAACCCAAAAAGTAAGAGTGGAAATAGCAAATATGGCTAGTGATAGTGCTCCGATATATAGAGTTGTCACAAAAGCAAAGAACAAAGCCAAGAAGCCTCCAGCCACACCCAAAGCAAAAACTCTGTCACTTTTGACTCCCTTCAAGATTGCTTGTCTTCAAGGAAACCTTCCCCAAATGCCTCTAAAAAAATATTAG

>Glyma19g02900.1   sequence type=predicted peptide   gene model=Glyma19g02900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ASRLTEVADQSELQNLLSAYLRAKPKSFSANPIPLSVFESEAKTSSGAVETEVKPSHGVVESEAKPSNGVADTESEPSVDSEREACVVSEMKNNAVKSEAQPSVDVNHKKTNAVDSEAELSVKGGLSVESEGSNQGDEDSRPASDALDGQNVGTDVVKNPFYYLIRVPRYDDDENIKENIKNALLQVEEKTKIRYAIRIKRQTIKEIDSVQSIMNRLNNAISVGDIDGKIRSMEHMIEHETLPLNKEKQLIREIKQLKQNRDELTCNMKKQDQSQQSIDNKDDNIEEHFKHLQLLKKEMEVLRNNVLKSDTKTKAAKKKYNDEYDKLNKYRRIRSPNRFLPAVMIIATPTQKVRVEIANMASDSAPIYRVVTKAKNKAKKPPATPKAKTLSLLTPFKIACLQGNLPQMPLKKY*







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